Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

27737890 .. 27740115

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26263.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATGAAAGGCATTACATTTAGTTTTACCCTTGCAATAGAGACGTTTCTGGAAGCCCCAAAGTCAAAAGCCCTATTCTTTCTTCCGACGCCGCACTTTCTCATCTTCCCGATCTCCGCCTCTCTCATCTCTTTCAGATTAGCTTGGAGTAGACTTACAGATTTGGGCTGCACTTTGGTGTTTATAGCTGTGATCTTTCTGGATAAGATGCACTTCTGGTCATCATACCAAAATGCAGATATTGTACTGAAACTAGAAGCTGCTGCCAAGGCAAAAGCTGATGCTGAAGCCAAAGCGAGGAAGTTGAAATCTTCGAAGCATAAGAGAAGATCTGTGTCAGACTCTGATTCTGATAGTGGCATTGATGATAGGAGAAAATCAAGTAAAAGGACTCACAAGAAGCACAAGAAACGCCCTCACTCAGACTCAAGTGATAGCGGAAAAAAGGAAAAGAGATCCAGAAGGAAGCCAAAAAGATATTCCTCGTGCTCAAGTGATGACAGCAGTGACGGATTTGAGAGTGGCTATGAAGGAGATAAGAAGAGGAAGAAGCGAAGCCACAAAAGGCACAGGGTTTACGATTCCAGGTCAGAATCTGGTGCTTTTGATTCTTCAAGTGATGACAATGATGAGAAAGTCAAGAGAAGTCATGGGAGGCACCACATGCGTAATAGGAGGGCAGATTCTGATCTTTCGGATTCTAGTGATGATGAACAGAGAAGAATCAAAAGAAGTCATGCAAAGCACCCTAAACACCATCAACAGTTGAAATCTGCTTTTGATTCTTCAAGTTGTGAGGACGGTGAGATTAGAAGGAAAAATCGTGCAAATTACCATAAATGTCATAGGCGATCAAATAGTGTTGATTCAAGGTCATCAGAGTCGGATTCTTATAGGTGTGACAGAAGGAGCAGATCTTTAGGGAAGTCATCAGATGACAACCATGATCAAGCAGGCAAACATATGAAGGACAAGAGAGATGGCCATCATCACCACCGTCACAGACGTCATCACAACCATCGCTTAGAGGAGAAGGTTCACAACCCTGAGGATTCAGTTAAGCCCAATGGAAAGCGCATTGATGATCTTGGTAGAAATGGAGCTACACACATTAATGATGCTCCTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

43.49

Weight (kDa)

9.95

Isoelectric Point (pI)

79.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1009
AccB1I	GGYRCC	1 cut(s)	657
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	3 cut(s)	92, 117, 438
AclWI	GGATC	1 cut(s)	450
AcoI	YGGCCR	1 cut(s)	982
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	89, 1006
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	307, 615, 769, 789, 870
AjnI	CCWGG	1 cut(s)	584
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	5 cut(s)	143, 188, 260, 278, 1103
AluI	AGCT	5 cut(s)	143, 188, 260, 278, 1103
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	450
AlwNI	CAGNNNCTG	3 cut(s)	344, 596, 686
AoxI	GGCC	1 cut(s)	982
ApeKI	GCWGC	3 cut(s)	168, 260, 263
AseI	ATTAAT	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	1077
AsuHPI	GGTGA	2 cut(s)	815, 983
AsuII	TTCGAA	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	1047
BalI	TGGCCA	1 cut(s)	984
BanI	GGYRCC	1 cut(s)	657
BauI	CACGAG	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	155, 247, 250
BccI	CCATC	4 cut(s)	765, 974, 993, 1026
BciT130I	CCWGG	1 cut(s)	586
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	254, 702
BglII	AGATCT	2 cut(s)	329, 914
BisI	GCNGC	4 cut(s)	92, 169, 261, 264
BlsI	GCNGC	4 cut(s)	93, 170, 262, 265
Bme1390I	CCNGG	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	1 cut(s)	586
BmsI	GCATC	3 cut(s)	198, 271, 1108
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	412, 475
BsaBI	GATNNNNATC	2 cut(s)	687, 984
BsaHI	GRCGYC	2 cut(s)	89, 1006
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	1047
Bse8I	GATNNNNATC	2 cut(s)	687, 984
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	267
BseJI	GATNNNNATC	2 cut(s)	687, 984
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	435, 1038
BseRI	GAGGAG	1 cut(s)	1043
BseXI	GCAGC	3 cut(s)	155, 247, 250
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	984
BshNI	GGYRCC	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	984
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
BspACI	CCGC	3 cut(s)	92, 117, 438
BspANI	GGCC	1 cut(s)	984
BspCNI	CTCAG	2 cut(s)	434, 1039
BspLI	GGNNCC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	657
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
BssNI	GRCGYC	2 cut(s)	89, 1006
BssSI	CACGAG	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	765, 803, 998
Bst6I	CTCTTC	1 cut(s)	536
BstACI	GRCGYC	2 cut(s)	89, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	955
BstDEI	CTNAG	3 cut(s)	421, 1024, 1047
BstHHI	GCGC	1 cut(s)	1077
BstKTI	GATC	9 cut(s)	114, 195, 332, 458, 691, 854, 917, 949, 1087
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 664
BstNI	CCWGG	1 cut(s)	586
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	155, 247, 250
BstX2I	RGATCY	3 cut(s)	329, 455, 914
BstYI	RGATCY	3 cut(s)	329, 455, 914
Bsu36I	CCTNAGG	1 cut(s)	1047
BsuRI	GGCC	1 cut(s)	984
BtgZI	GCGATG	1 cut(s)	1004
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	511
Cac8I	GCNNGC	1 cut(s)	955
CaiI	CAGNNNCTG	3 cut(s)	344, 596, 686
CfoI	GCGC	1 cut(s)	1077
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	4 cut(s)	650, 664, 737, 944
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	3 cut(s)	421, 1024, 1047
DpnI	GATC	9 cut(s)	113, 194, 331, 457, 690, 853, 916, 948, 1086
DpnII	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	1047
EcoRII	CCWGG	1 cut(s)	584
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	4 cut(s)	653, 667, 740, 947
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	4 cut(s)	649, 663, 736, 943
FauNDI	CATATG	1 cut(s)	963
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	92, 169, 261, 264
Fsp4HI	GCNGC	4 cut(s)	92, 169, 261, 264
FspBI	CTAG	2 cut(s)	254, 702
GlaI	GCGC	1 cut(s)	1076
GluI	GCNGC	4 cut(s)	92, 169, 261, 264
HaeIII	GGCC	1 cut(s)	984
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	1077
Hin1I	GRCGYC	2 cut(s)	89, 1006
Hin1II	CATG	4 cut(s)	653, 667, 740, 947
Hin6I	GCGC	1 cut(s)	1075
HinP1I	GCGC	1 cut(s)	1075
HphI	GGTGA	2 cut(s)	815, 983
Hpy166II	GTNNAC	3 cut(s)	152, 577, 1039
Hpy188III	TCNNGA	6 cut(s)	50, 109, 200, 459, 640, 1124
Hpy8I	GTNNAC	3 cut(s)	152, 577, 1039
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	6 cut(s)	456, 524, 807, 900, 961, 1027
HpyCH4III	ACNGT	3 cut(s)	765, 803, 998
HpyCH4IV	ACGT	2 cut(s)	44, 1006
HpyCH4V	TGCA	6 cut(s)	35, 171, 211, 236, 740, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 664
HpyF3I	CTNAG	3 cut(s)	421, 1024, 1047
HpySE526I	ACGT	2 cut(s)	44, 1006
Hsp92I	GRCGYC	2 cut(s)	89, 1006
Hsp92II	CATG	4 cut(s)	653, 667, 740, 947
HspAI	GCGC	1 cut(s)	1075
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
LmnI	GCTCC	3 cut(s)	909, 1100, 1126
Lsp1109I	GCAGC	3 cut(s)	155, 247, 250
LweI	GCATC	3 cut(s)	198, 271, 1108
MaeI	CTAG	2 cut(s)	254, 702
MaeII	ACGT	2 cut(s)	44, 1006
MaeIII	GTNAC	3 cut(s)	506, 899, 998
MalI	GATC	9 cut(s)	113, 194, 331, 457, 690, 853, 916, 948, 1086
MboI	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
MboII	GAAGA	9 cut(s)	74, 97, 303, 339, 553, 559, 603, 732, 777
MflI	RGATCY	3 cut(s)	329, 455, 914
MhlI	GDGCHC	1 cut(s)	491
MlsI	TGGCCA	1 cut(s)	984
MluCI	AATT	1 cut(s)	829
MluNI	TGGCCA	1 cut(s)	984
MlyI	GAGTC	4 cut(s)	335, 385, 419, 890
MmeI	TCCRAC	2 cut(s)	110, 864
Mox20I	TGGCCA	1 cut(s)	984
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	2 cut(s)	1059, 1113
MslI	CAYNNNNRTG	2 cut(s)	176, 1113
Msp20I	TGGCCA	1 cut(s)	984
MspR9I	CCNGG	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	586
MwoI	GCNNNNNNNGC	2 cut(s)	269, 664
NdeI	CATATG	1 cut(s)	963
NdeII	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
NlaIII	CATG	4 cut(s)	653, 667, 740, 947
NlaIV	GGNNCC	1 cut(s)	659
NmuCI	GTSAC	3 cut(s)	506, 899, 998
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	314
OliI	CACNNNNGTG	1 cut(s)	176
PkrI	GCNGC	4 cut(s)	93, 170, 262, 265
PleI	GAGTC	4 cut(s)	335, 385, 419, 889
PpsI	GAGTC	4 cut(s)	335, 385, 419, 889
PshBI	ATTAAT	1 cut(s)	1113
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	1 cut(s)	659
PstNI	CAGNNNCTG	3 cut(s)	344, 596, 686
PsuI	RGATCY	3 cut(s)	329, 455, 914
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
RseI	CAYNNNNRTG	2 cut(s)	176, 1113
SaqAI	TTAA	2 cut(s)	1059, 1113
SatI	GCNGC	4 cut(s)	92, 169, 261, 264
Sau3AI	GATC	9 cut(s)	111, 192, 329, 455, 688, 851, 914, 946, 1084
SchI	GAGTC	4 cut(s)	335, 385, 419, 890
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	198, 271, 1108
SfuI	TTCGAA	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	176, 1113
SmlI	CTYRAG	2 cut(s)	427, 490
SmoI	CTYRAG	2 cut(s)	427, 490
Sse9I	AATT	1 cut(s)	829
SsiI	CCGC	3 cut(s)	92, 117, 438
SspMI	CTAG	2 cut(s)	254, 702
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	765, 803, 998
TaiI	ACGT	2 cut(s)	47, 1009
TaqI	TCGA	1 cut(s)	314
TasI	AATT	1 cut(s)	829
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	1059, 1113
Tru9I	TTAA	2 cut(s)	1059, 1113
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	3 cut(s)	506, 899, 998
TseI	GCWGC	3 cut(s)	168, 260, 263
Tsp45I	GTSAC	3 cut(s)	506, 899, 998
TspDTI	ATGAA	4 cut(s)	20, 543, 726, 980
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	1113
XceI	RCATGY	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	2 cut(s)	254, 702
ZraI	GACGTC	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.