Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

2421768 .. 2422382

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1033400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCACTTCCGGTCATCATCGTACCAACATGCAGATATTGTGCTGGTTTTTATATCTAAATGGATGCAACTGGTTGAGGAGAAAAAGAAACGAGCCTGGGAGAAGAAAGAAGCCCCGCTGAAGTGGGAGCAGAAACTAGAAGCTGCTGCAAAGGCAAAAGCCGATGCCGAAGCCAAAGAGAGGAAGTTGAAATCTTCAAAGCACAAGAGAAGATCTGTGTCAGAGTCTGATAGCAATAGCGACACTGACAGAAGTGATGGGAGAAGAAAGTCAAGTAAAAGAACTCACAAGAAGCACGGGAATCACTCTCACTCTGATGCAAATGACAGTGAAGTGAGGAAGGAGAAGAAATCCAAGCGAAAGCTAAAGAAACATTCCTCAGGCTCAAGTGATGATAGCAGTGATGAGTATGAGAGTGATTACGACGAAGATAGGAAGAGGAAGAAGAGAAGCCATAAAAAGCACAGGCATCATGATTCTAGATCAGATTCTGGTCCCGATTCTTCCAGTGATGATGAGTATGATACAGTGAAGGGAAGTCATTCGAGGCACCACAAGCACCATCAGAGGTCAGACTCAGAATCTTCTGGTTCTTATAGTGATGAAGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

23.75

Weight (kDa)

9.49

Isoelectric Point (pI)

70.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	549
AciI	CCGC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	190, 198
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	143, 364
AluI	AGCT	2 cut(s)	143, 364
AlwNI	CAGNNNCTG	2 cut(s)	227, 491
ApeKI	GCWGC	2 cut(s)	143, 146
Asp700I	GAANNNNTTC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	130, 133
BccI	CCATC	2 cut(s)	251, 570
BciT130I	CCWGG	1 cut(s)	97
BfaI	CTAG	2 cut(s)	137, 480
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	496, 551
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	4 cut(s)	54, 154, 307, 478
BpuEI	CTTGAG	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	75, 507
Bse21I	CCTNAGG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	393, 591
BseNI	ACTGG	2 cut(s)	75, 507
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	130, 133
BshNI	GGYRCC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	212, 482
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	392, 590
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	496, 551
BspT107I	GGYRCC	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	75, 507
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	212, 482
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	329, 529
Bst6I	CTCTTC	2 cut(s)	431, 440
BstDEI	CTNAG	2 cut(s)	379, 577
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	215, 485
BstMBI	GATC	2 cut(s)	212, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 556
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	130, 133
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	5 cut(s)	243, 334, 406, 514, 534
CaiI	CAGNNNCTG	2 cut(s)	227, 491
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	29, 473
CviJI	RGCY	8 cut(s)	95, 113, 143, 161, 173, 364, 384, 453
CviKI_1	RGCY	8 cut(s)	95, 113, 143, 161, 173, 364, 384, 453
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	379, 577
DpnI	GATC	2 cut(s)	214, 484
DpnII	GATC	2 cut(s)	212, 482
Eam1104I	CTCTTC	2 cut(s)	431, 440
EarI	CTCTTC	2 cut(s)	431, 440
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	32, 476
FaiI	YATR	7 cut(s)	30, 53, 411, 456, 474, 522, 597
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	2 cut(s)	28, 472
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	144, 147
FspBI	CTAG	2 cut(s)	137, 480
GluI	GCNGC	2 cut(s)	144, 147
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	32, 476
HinfI	GANTC	7 cut(s)	224, 301, 476, 488, 500, 575, 581
HpaII	CCGG	1 cut(s)	10
Hpy188I	TCNGA	7 cut(s)	223, 229, 316, 487, 567, 574, 580
Hpy188III	TCNNGA	3 cut(s)	473, 480, 497
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	334, 526
HpyCH4III	ACNGT	2 cut(s)	329, 529
HpyCH4V	TGCA	5 cut(s)	4, 32, 67, 149, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 556
HpyF3I	CTNAG	2 cut(s)	379, 577
Hsp92II	CATG	2 cut(s)	32, 476
Kzo9I	GATC	2 cut(s)	212, 482
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	130, 133
LweI	GCATC	4 cut(s)	54, 154, 307, 478
MaeI	CTAG	2 cut(s)	137, 480
MalI	GATC	2 cut(s)	214, 484
MboI	GATC	2 cut(s)	212, 482
MflI	RGATCY	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	233, 569
MnlI	CCTC	7 cut(s)	70, 174, 330, 388, 432, 540, 561
MroXI	GAANNNNTTC	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	152, 556
NdeII	GATC	2 cut(s)	212, 482
NlaIII	CATG	2 cut(s)	32, 476
NlaIV	GGNNCC	2 cut(s)	496, 551
NspI	RCATGY	1 cut(s)	32
PagI	TCATGA	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	5 cut(s)	301, 476, 488, 500, 581
PkrI	GCNGC	2 cut(s)	145, 148
PleI	GAGTC	2 cut(s)	232, 569
PpsI	GAGTC	2 cut(s)	232, 569
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	496, 551
PspPI	GGNCC	1 cut(s)	494
PstNI	CAGNNNCTG	2 cut(s)	227, 491
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	315
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	2 cut(s)	212, 482
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	2 cut(s)	233, 569
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	3 cut(s)	145, 366, 572
SfaNI	GCATC	4 cut(s)	54, 154, 307, 478
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	137, 480
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	329, 529
TaqI	TCGA	1 cut(s)	545
TfiI	GAWTC	5 cut(s)	301, 476, 488, 500, 581
TscAI	CASTG	5 cut(s)	250, 334, 406, 514, 534
TseI	GCWGC	2 cut(s)	143, 146
TspRI	CASTG	5 cut(s)	250, 334, 406, 514, 534
VpaK11BI	GGWCC	1 cut(s)	494
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	2 cut(s)	137, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.