AT2G02170

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004396
Physical Location & Seq
Reverse (-)
556433 .. 559046
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02170.1

Sequence Viewer

Length: 1461 bp
ATGGATTACGAACGAATCGGAAAGACCCAGGTTACTAGTAGCGGCGGCGGATTTTCTCCGGGGAAGTTAAGGAGTATGCTTCTTCTAGGTGTTGATAGAAAGAAGAATGAAGAAGAAGAATCAACTCCTACAATGAGATCTGGGTCTAATCAAATTGATGACCCTAGGGTTTATGTTGCTAGTGGATTAGATGATTGCAAAGATGTTGATGTTGTGAGTGAGATTACTGATTGTTCTACTTCAGGGATAGCTAGATCGATTAGTTTGGGTCTTCAAGAGTATTCTGATTATGATAATGTGAATGAGATCAAGAGTGTTTCTGCATCATCTGTCTTTGAGTTTCAAAAGACTGAGAAGGAAAAAGTTAATCAAAGAATGCCTATTAGATCATTCTCTAAACCAGCTCCATCTAAATGGGATGATGCTCAGAAATGGATTGCTAGTCCTACGGCTAACCGACCGAAGACTGGACAGGTTCAGGTTCCGGGTTCGAAGAAAGGGCCTAGCTTTGGTCGTCAGTCTTCTATGAAGATTGTTGAAGTTGCTGAACATAGAGTGGTTGAAGAGCCTGATACAAAGAGAATAGATGTAAGCCAAGTGAAAAAGGATATGGGAAACAAGTTTGGTAGCTGGGAAGTTGATTCGTACACTACCGTGGATTCATATGTCAAACCGGTTCTTATGGTTGAGAACTCTATTGTAGAATCAGCAACTGAAGTTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTTGCTCAACCGCCTTCAACGGCAAGGTCTGTGTCAATGAGAGACATGGGAACTGAAATGACTCCTATAGCGAGCCAAGAACCTTCTAGAAACGGGACACCGATTAGGGCAACAACGCCAATACGAAGTCCTATATCTTCTGAACCTTCAAGTCCAGGCAGACAAGCATCAGCTTCTCCTATGAGTAACAAGGAACTGTCAGAGAAAGAGCTTCAAATGAAAACTAGGAGAGAGATAATGGTGTTGGGTACTCAACTTGGTAAATTTAACATTGCTGCTTGGGCTAGCAAGGAGGATGAAGATAAAGACGCATCCACATCATTAAAGACCAAAGCTTCTCTACAAACTTCTAAAAGTGTTTCTGAAGCTCGTGCTACAGCGTGGGAGGAAGCGGAAAAAGCTAAGCACATGGCTAGGTTCAGACGCGAAGAGATGAAGATTCAAGCATGGGAGAATCATCAGAAGGCGAAATCTGAAGCCGAGATGAAGAAAACCGAGGTTAAAGTTGAGAGGATTAAGGGACGAGCACAAGACCGGTTGATGAAGAAACTCGCTACAATCGAGCGCAAAGCAGAGGAAAAGCGAGCAGCGGCTGAAGCAAAGAAGGATCATCAGGCAGCTAAAACAGAGAAACAAGCTGAACAAATCCGAAGAACAGGCAAAGTACCTTCATTGTTGTTCTCTTGCTTTAGCTTTTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

486

Amino Acids

53.95

Weight (kDa)

9.15

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 373 - 476 5.5e-33 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 743
AccII CGCG 1 cut(s) 1182
AciI CCGC 6 cut(s) 42, 45, 48, 767, 1148, 1346
AclWI GGATC 1 cut(s) 1371
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 5 cut(s) 225, 735, 1140, 1251, 1371
AfaI GTAC 3 cut(s) 647, 1006, 1422
AfiI CCNNNNNNNGG 2 cut(s) 467, 509
AgeI ACCGGT 2 cut(s) 673, 1290
AgsI TTSAA 8 cut(s) 275, 344, 539, 563, 774, 906, 971, 1199
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 2 cut(s) 27, 910
AleI CACNNNNGTG 1 cut(s) 653
Alw21I GWGCWC 1 cut(s) 1285
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 1 cut(s) 1371
AlwNI CAGNNNCTG 2 cut(s) 713, 1349
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 1031, 1343, 1373
ApoI RAATTY 1 cut(s) 1019
AsiGI ACCGGT 2 cut(s) 673, 1290
AspA2I CCTAGG 1 cut(s) 164
AspLEI GCGC 1 cut(s) 1323
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 2 cut(s) 60, 486
AsuII TTCGAA 1 cut(s) 491
AsuNHI GCTAGC 1 cut(s) 1040
AvrII CCTAGG 1 cut(s) 164
BauI CACGAG 1 cut(s) 1125
BbsI GAAGAC 3 cut(s) 263, 470, 513
Bbv12I GWGCWC 1 cut(s) 1285
BbvI GCAGC 3 cut(s) 1018, 1355, 1385
BccI CCATC 1 cut(s) 415
BceAI ACGGC 3 cut(s) 465, 714, 792
BciT130I CCWGG 2 cut(s) 29, 912
BcnI CCSGG 2 cut(s) 60, 486
BcoDI GTCTC 1 cut(s) 792
BcuI ACTAGT 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 822, 1131
BglII AGATCT 1 cut(s) 137
BisI GCNGC 6 cut(s) 43, 46, 1032, 1344, 1347, 1374
BlnI CCTAGG 1 cut(s) 164
BlpI GCTNAGC 1 cut(s) 1158
BlsI GCNGC 6 cut(s) 44, 47, 1033, 1345, 1348, 1375
Bme1390I CCNGG 4 cut(s) 29, 60, 486, 912
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 4 cut(s) 29, 60, 486, 912
BmsI GCATC 4 cut(s) 332, 412, 932, 1076
BmtI GCTAGC 1 cut(s) 1044
BpiI GAAGAC 3 cut(s) 263, 470, 513
Bpu1102I GCTNAGC 1 cut(s) 1158
Bpu14I TTCGAA 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 60, 486
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 27, 59, 164, 654, 1251
BsaWI WCCGGW 2 cut(s) 673, 1290
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 509
Bse118I RCCGGY 2 cut(s) 673, 1290
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 29, 912
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 5 cut(s) 27, 59, 164, 654, 1251
BseGI GGATG 3 cut(s) 424, 1057, 1067
BseLI CCNNNNNNNGG 2 cut(s) 467, 509
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 3 cut(s) 342, 440, 739
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 3 cut(s) 1018, 1355, 1385
BseYI CCCAGC 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 1182
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 1 cut(s) 502
BshTI ACCGGT 2 cut(s) 673, 1290
BshVI ATCGAT 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 1285
BsiSI CCGG 4 cut(s) 59, 485, 674, 1291
BslFI GGGAC 2 cut(s) 865, 1290
BslI CCNNNNNNNGG 2 cut(s) 467, 509
BsmAI GTCTC 1 cut(s) 792
BsmFI GGGAC 2 cut(s) 865, 1290
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 1285
Bsp143I GATC 5 cut(s) 137, 254, 306, 386, 1363
Bsp1720I GCTNAGC 1 cut(s) 1158
BspACI CCGC 6 cut(s) 42, 45, 48, 767, 1148, 1346
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 3 cut(s) 343, 439, 738
BspDI ATCGAT 1 cut(s) 257
BspFNI CGCG 1 cut(s) 1182
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 483
BspOI GCTAGC 1 cut(s) 1044
BspPI GGATC 1 cut(s) 1371
BspQI GCTCTTC 1 cut(s) 558
BspT104I TTCGAA 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 1026
BsrFI RCCGGY 2 cut(s) 673, 1290
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 2 cut(s) 673, 1290
BssECI CCNNGG 5 cut(s) 27, 59, 164, 654, 1251
BssMI GATC 5 cut(s) 137, 254, 306, 386, 1363
BssSI CACGAG 1 cut(s) 1125
BssT1I CCWWGG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 1125
Bst2UI CCWGG 2 cut(s) 29, 912
Bst4CI ACNGT 2 cut(s) 655, 954
Bst6I CTCTTC 2 cut(s) 558, 1179
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 829, 1042, 1341
BstDEI CTNAG 4 cut(s) 351, 426, 725, 1158
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 3 cut(s) 424, 1057, 1067
BstFNI CGCG 1 cut(s) 1182
BstHHI GCGC 1 cut(s) 1323
BstKTI GATC 5 cut(s) 140, 257, 309, 389, 1366
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 5 cut(s) 137, 254, 306, 386, 1363
BstMCI CGRYCG 1 cut(s) 461
BstMWI GCNNNNNNNGC 3 cut(s) 1037, 1154, 1352
BstNI CCWGG 2 cut(s) 29, 912
BstSCI CCNGG 4 cut(s) 27, 58, 484, 910
BstSFI CTRYAG 2 cut(s) 822, 1131
BstUI CGCG 1 cut(s) 1182
BstV1I GCAGC 3 cut(s) 1018, 1355, 1385
BstV2I GAAGAC 3 cut(s) 263, 470, 513
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 1 cut(s) 502
BsuTUI ATCGAT 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 424, 1057, 1067
Cac8I GCNNGC 3 cut(s) 829, 1042, 1341
CaiI CAGNNNCTG 2 cut(s) 713, 1349
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 1323
Cfr10I RCCGGY 2 cut(s) 673, 1290
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 257
CseI GACGC 2 cut(s) 1073, 1188
Csp6I GTAC 3 cut(s) 646, 1005, 1421
CspAI ACCGGT 2 cut(s) 673, 1290
CviAII CATG 4 cut(s) 734, 802, 1165, 1203
CviQI GTAC 3 cut(s) 646, 1005, 1421
DdeI CTNAG 4 cut(s) 351, 426, 725, 1158
DpnI GATC 5 cut(s) 139, 256, 308, 388, 1365
DpnII GATC 5 cut(s) 137, 254, 306, 386, 1363
DrdI GACNNNNNNGTC 1 cut(s) 743
DseDI GACNNNNNNGTC 1 cut(s) 743
Eam1104I CTCTTC 2 cut(s) 558, 1179
EarI CTCTTC 2 cut(s) 558, 1179
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 164
Eco57I CTGAAG 5 cut(s) 225, 735, 1140, 1251, 1371
EcoO109I RGGNCCY 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 27, 910
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 4 cut(s) 737, 805, 1168, 1206
FaqI GGGAC 2 cut(s) 865, 1290
FatI CATG 4 cut(s) 733, 801, 1164, 1202
FauNDI CATATG 1 cut(s) 664
Fnu4HI GCNGC 6 cut(s) 43, 46, 1032, 1344, 1347, 1374
FokI GGATG 3 cut(s) 431, 1054, 1064
Fsp4HI GCNGC 6 cut(s) 43, 46, 1032, 1344, 1347, 1374
GlaI GCGC 1 cut(s) 1322
GluI GCNGC 6 cut(s) 43, 46, 1032, 1344, 1347, 1374
GsaI CCCAGC 1 cut(s) 634
HaeIII GGCC 1 cut(s) 502
HapII CCGG 4 cut(s) 59, 485, 674, 1291
HgaI GACGC 2 cut(s) 1073, 1188
HhaI GCGC 1 cut(s) 1323
Hin1II CATG 4 cut(s) 737, 805, 1168, 1206
Hin6I GCGC 1 cut(s) 1321
HinP1I GCGC 1 cut(s) 1321
HindIII AAGCTT 1 cut(s) 1089
HinfI GANTC 9 cut(s) 15, 119, 641, 659, 704, 737, 817, 1195, 1210
HpaII CCGG 4 cut(s) 59, 485, 674, 1291
Hpy166II GTNNAC 1 cut(s) 648
Hpy188III TCNNGA 4 cut(s) 275, 310, 734, 843
Hpy8I GTNNAC 1 cut(s) 648
HpyAV CCTTC 7 cut(s) 349, 780, 849, 912, 1213, 1354, 1434
HpyCH4III ACNGT 2 cut(s) 655, 954
HpyCH4V TGCA 2 cut(s) 198, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 1037, 1154, 1352
HpyF3I CTNAG 4 cut(s) 351, 426, 725, 1158
Hsp92II CATG 4 cut(s) 737, 805, 1168, 1206
HspAI GCGC 1 cut(s) 1321
Kzo9I GATC 5 cut(s) 137, 254, 306, 386, 1363
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 3 cut(s) 1018, 1355, 1385
LweI GCATC 4 cut(s) 332, 412, 932, 1076
MaeIII GTNAC 2 cut(s) 31, 941
MalI GATC 5 cut(s) 139, 256, 308, 388, 1365
MboI GATC 5 cut(s) 137, 254, 306, 386, 1363
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 1285
MluCI AATT 2 cut(s) 153, 1019
MlyI GAGTC 2 cut(s) 731, 811
MnlI CCTC 5 cut(s) 1042, 1135, 1246, 1260, 1324
MseI TTAA 8 cut(s) 68, 366, 720, 1023, 1079, 1257, 1272, 1459
MslI CAYNNNNRTG 2 cut(s) 412, 653
MspA1I CMGCKG 1 cut(s) 1346
MspI CCGG 4 cut(s) 59, 485, 674, 1291
MspR9I CCNGG 4 cut(s) 29, 60, 486, 912
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 2 cut(s) 29, 912
MvnI CGCG 1 cut(s) 1182
MwoI GCNNNNNNNGC 3 cut(s) 1037, 1154, 1352
NciI CCSGG 2 cut(s) 60, 486
NdeI CATATG 1 cut(s) 664
NdeII GATC 5 cut(s) 137, 254, 306, 386, 1363
NheI GCTAGC 1 cut(s) 1040
NlaIII CATG 4 cut(s) 737, 805, 1168, 1206
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 1 cut(s) 1261
NspV TTCGAA 1 cut(s) 491
OliI CACNNNNGTG 1 cut(s) 653
PagI TCATGA 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 1314
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 7 cut(s) 15, 119, 641, 659, 704, 1195, 1210
PinAI ACCGGT 2 cut(s) 673, 1290
PkrI GCNGC 6 cut(s) 44, 47, 1033, 1345, 1348, 1375
PleI GAGTC 2 cut(s) 731, 811
PpsI GAGTC 2 cut(s) 731, 811
Psp6I CCWGG 2 cut(s) 27, 910
PspFI CCCAGC 1 cut(s) 630
PspGI CCWGG 2 cut(s) 27, 910
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 500
PstNI CAGNNNCTG 2 cut(s) 713, 1349
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 3 cut(s) 647, 1006, 1422
RsaNI GTAC 3 cut(s) 646, 1005, 1421
RseI CAYNNNNRTG 2 cut(s) 412, 653
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 8 cut(s) 68, 366, 720, 1023, 1079, 1257, 1272, 1459
SatI GCNGC 6 cut(s) 43, 46, 1032, 1344, 1347, 1374
Sau3AI GATC 5 cut(s) 137, 254, 306, 386, 1363
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 2 cut(s) 731, 811
ScrFI CCNGG 4 cut(s) 29, 60, 486, 912
SduI GDGCHC 1 cut(s) 1285
SfaNI GCATC 4 cut(s) 332, 412, 932, 1076
SfcI CTRYAG 2 cut(s) 822, 1131
SfuI TTCGAA 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 412, 653
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 2 cut(s) 153, 1019
SsiI CCGC 6 cut(s) 42, 45, 48, 767, 1148, 1346
StyD4I CCNGG 4 cut(s) 27, 58, 484, 910
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 655, 954
TaqI TCGA 3 cut(s) 257, 491, 1317
TaqII GACCGA 1 cut(s) 475
TasI AATT 2 cut(s) 153, 1019
TauI GCSGC 3 cut(s) 45, 48, 1349
TfiI GAWTC 7 cut(s) 15, 119, 641, 659, 704, 1195, 1210
Tru1I TTAA 8 cut(s) 68, 366, 720, 1023, 1079, 1257, 1272, 1459
Tru9I TTAA 8 cut(s) 68, 366, 720, 1023, 1079, 1257, 1272, 1459
TseI GCWGC 3 cut(s) 1031, 1343, 1373
TspDTI ATGAA 9 cut(s) 123, 542, 651, 989, 1068, 1205, 1256, 1313, 1416
XapI RAATTY 1 cut(s) 1019
XbaI TCTAGA 1 cut(s) 842
XmaJI CCTAGG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.