Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004396

Physical Location & Seq

Genomic Coordinates Forward (+)

523144 .. 524508

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATTACGAAAGGATCCAAAAGCCTCAGGTGGGCGGTGGGGGATTTTCCCCAGGTAAGCAGAGGAGTATGCTACTGGGAGTAGAGAAGAAGAGGAAGGAGAATGAAGATACTGAATCTGCATTCACTCTGAGATCTCAGCCTCCTGACTTTGATGATCAAGCTGGGGGTGGTGCATCTGATAACTGCAAAGATGTAGATGTTGTGAGTGTTCTTCCCAAATGCTCGACTTCGAATGCTGCTGACTCATTAGGCCCGGTGATGGGTAGCGACCAGCGATTGAAGGATAGCACATTAGTCAATTCAAGAATTAGGAACCAAGAAGACCCTTCTTTAGATTATGGTAGTGGGTGCGATGCTATGAGTGTGTCCGCATCCATGTTTGAGTTTCAGAAGGCAGAGTGTGCCCCACAAAGGGTGCCTCTTGCCCCGTTCTCCAAACCAGCGCCGTCCAAATGGGATGATGCGCAGAAGTGGATAGCGAGCCCAACTTCGAACCGGCCAAAGATGGGACAGGTTCAAATGCAGGGTGGGCAAGGAGTTGGATTGCGAAAGGTGGGTAGCTTTGGTTATGGGAGTAGACAATCGAGCAGTAGCACAAAGGTTGTTGTTGAAGTTCCAGATCAAAAAGTAGATATTTTTGAAGAACCTGATACGAAACGAATTGACACAAGCCAACCTAAGATGGAAAGTGGGGGGCAGAAGTGTGTAAGTTGGGAGCCTGATCCATACCCCATTGCTGATTCATATGGCAAGTCGGTGCTCATGGTTGAGAACTCTGTCGGAGAGTTGGCAAGTAAGAATGTGGTTTTCTTCTTGTTTCATAACTGCATCCTTATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

282

Amino Acids

30.55

Weight (kDa)

5.28

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170
fragaria_vesca	FvH4_4g36350 FvH4_4g36350 FvH4_4g36350
malus_domestica	MD13G1009800.v1.1 MD16G1008100.v1.1
prunus_persica	Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1
pyrus_communis	pycom13g00830 pycom16g00790
rosa_chinensis	RchiOBHm_Chr4g0446081
rosa_laevigata	RLG00000005693
rosa_multiflora	Rmu_sc0007511.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386490
rosa_rugosa	Rorug04G0367200 Rorug04G0367300 Rorug04G0367400 Rorug04G0367500 Rorug04G0367600 Rorug04G0367700 Rorug04G0367800
rosa_samantha	Rh4AG429300 Rh4BG438800 Rh4CG456100 Rh4DG437000
rosa_wichuraiana	Rw4G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	580
AciI	CCGC	2 cut(s)	36, 372
AclWI	GGATC	3 cut(s)	10, 23, 719
AcoI	YGGCCR	1 cut(s)	500
AfiI	CCNNNNNNNGG	6 cut(s)	32, 262, 263, 414, 415, 509
AgsI	TTSAA	5 cut(s)	283, 306, 521, 614, 644
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	164, 564
AluI	AGCT	2 cut(s)	164, 564
Alw21I	GWGCWC	1 cut(s)	765
AlwI	GGATC	3 cut(s)	10, 23, 719
AoxI	GGCC	2 cut(s)	253, 500
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	448, 469
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	271
AsuII	TTCGAA	2 cut(s)	233, 494
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	256, 502, 679
BceAI	ACGGC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	449
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	54, 257
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	4 cut(s)	17, 317, 420, 720
BmrFI	CCNGG	2 cut(s)	54, 257
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	5 cut(s)	185, 346, 383, 454, 840
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	330
Bpu14I	TTCGAA	2 cut(s)	233, 494
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 262, 263, 414, 415, 509
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	81
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	374, 466, 831
BseLI	CCNNNNNNNGG	6 cut(s)	32, 262, 263, 414, 415, 509
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	41, 122, 152
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	255, 502
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	257, 499
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	6 cut(s)	32, 262, 263, 414, 415, 509
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	2 cut(s)	122, 241
BsnI	GGCC	2 cut(s)	255, 502
Bsp119I	TTCGAA	2 cut(s)	233, 494
Bsp1286I	GDGCHC	3 cut(s)	409, 488, 765
Bsp143I	GATC	5 cut(s)	15, 134, 157, 622, 724
BspACI	CCGC	2 cut(s)	36, 372
BspANI	GGCC	2 cut(s)	255, 502
BspCNI	CTCAG	3 cut(s)	40, 123, 151
BspLI	GGNNCC	4 cut(s)	17, 317, 420, 720
BspPI	GGATC	3 cut(s)	10, 23, 719
BspT104I	TTCGAA	2 cut(s)	233, 494
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	5 cut(s)	15, 134, 157, 622, 724
Bst2UI	CCWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBI	TTCGAA	2 cut(s)	233, 494
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	4 cut(s)	27, 131, 138, 681
BstF5I	GGATG	3 cut(s)	374, 466, 831
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 469
BstKTI	GATC	5 cut(s)	18, 137, 160, 625, 727
BstMBI	GATC	5 cut(s)	15, 134, 157, 622, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 532
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	52, 255
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	2 cut(s)	15, 134
BstYI	RGATCY	2 cut(s)	15, 134
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	255, 502
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	374, 466, 831
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	2 cut(s)	448, 469
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	2 cut(s)	379, 766
CviJI	RGCY	9 cut(s)	25, 142, 164, 255, 486, 502, 564, 675, 721
CviKI_1	RGCY	9 cut(s)	25, 142, 164, 255, 486, 502, 564, 675, 721
DdeI	CTNAG	4 cut(s)	27, 131, 138, 681
DpnI	GATC	5 cut(s)	17, 136, 159, 624, 726
DpnII	GATC	5 cut(s)	15, 134, 157, 622, 724
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	2 cut(s)	382, 769
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	2 cut(s)	378, 765
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	3 cut(s)	361, 473, 818
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	2 cut(s)	447, 468
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	255, 502
HapII	CCGG	2 cut(s)	257, 499
HhaI	GCGC	2 cut(s)	448, 469
Hin1II	CATG	2 cut(s)	382, 769
Hin6I	GCGC	2 cut(s)	446, 467
HinP1I	GCGC	2 cut(s)	446, 467
HinfI	GANTC	3 cut(s)	116, 245, 743
HpaII	CCGG	2 cut(s)	257, 499
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	4 cut(s)	132, 181, 393, 785
Hpy188III	TCNNGA	3 cut(s)	146, 306, 620
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	4 cut(s)	91, 277, 339, 388
HpyCH4V	TGCA	5 cut(s)	122, 176, 189, 526, 831
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 532
HpyF3I	CTNAG	4 cut(s)	27, 131, 138, 681
Hsp92II	CATG	2 cut(s)	382, 769
HspAI	GCGC	2 cut(s)	446, 467
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	15, 134, 157, 622, 724
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	5 cut(s)	185, 346, 383, 454, 840
MalI	GATC	5 cut(s)	17, 136, 159, 624, 726
MboI	GATC	5 cut(s)	15, 134, 157, 622, 724
MboII	GAAGA	7 cut(s)	100, 103, 119, 206, 335, 656, 805
MflI	RGATCY	2 cut(s)	15, 134
MhlI	GDGCHC	3 cut(s)	409, 488, 765
MluCI	AATT	3 cut(s)	301, 309, 663
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	523, 763
MnlI	CCTC	5 cut(s)	36, 57, 87, 153, 432
MspI	CCGG	2 cut(s)	257, 499
MspR9I	CCNGG	2 cut(s)	54, 257
Mva1269I	GAATGC	2 cut(s)	122, 241
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	404, 532
NciI	CCSGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	5 cut(s)	15, 134, 157, 622, 724
NlaIII	CATG	2 cut(s)	382, 769
NlaIV	GGNNCC	4 cut(s)	17, 317, 420, 720
NsbI	TGCGCA	1 cut(s)	468
NspV	TTCGAA	2 cut(s)	233, 494
PctI	GAATGC	2 cut(s)	122, 241
PfeI	GAWTC	2 cut(s)	116, 743
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	4 cut(s)	17, 317, 420, 720
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	15, 134
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	15, 134, 157, 622, 724
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	54, 257
SduI	GDGCHC	3 cut(s)	409, 488, 765
SetI	ASST	9 cut(s)	33, 58, 166, 519, 558, 566, 606, 652, 682
SfaNI	GCATC	5 cut(s)	185, 346, 383, 454, 840
SfuI	TTCGAA	2 cut(s)	233, 494
Sse9I	AATT	3 cut(s)	301, 309, 663
SsiI	CCGC	2 cut(s)	36, 372
StyD4I	CCNGG	2 cut(s)	52, 255
TaqI	TCGA	4 cut(s)	227, 233, 494, 587
TasI	AATT	3 cut(s)	301, 309, 663
TfiI	GAWTC	2 cut(s)	116, 743
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	120, 735, 812
XmiI	GTMKAC	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.