Prupe.1G342800_v2.0.a1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004396
Physical Location & Seq
Reverse (-)
32168828 .. 32173502
4675 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G342800.1

Sequence Viewer

Length: 1545 bp
ATGGATTACGAAAGGATCCAAAAGCCTCAGGGCGGTGGGGGGTTTTCACCAGGGAAGTTGAGGACTATGCTACTGGGAGTAGAGAAGAAGAGGAAGGAAAAGGAAGATCCTGAATCTAAATTTGCTTTGAGATCTCAACCTTCTGACTTTGATGAAGCTGGGGGTGGCGGTTCTGATAACTGCAAAGATGTAGATGTTGTTAGTGTCCTTCCTGAATGCTCGACTTCGACTGCTGCTGACTCTGTAGGCTCAGAGATGCTTAGTGACCGTAGATTGAAGGATAACACATCAGTCAATTCCAGAGTTAGGAACCAAGAAGACCCTTCTTTAGATTATGATAGTGGGCATGATGCTGTGTGTGTGTCCTCATCCATATTTGAGTTTCAGAAGGCAGAGCGTGCCCCACAAAGAGTGCCTCTTGCGCCCTTCTCCAAACCAGCACCATCCAAATGGGATGATGCACAGAAGTGGATAGCGAGTCCAACTTGGAACCGCCCAAAGATGGGGCAGGCTCAAATGCAGGGTGGGCAAGGAGTTGGATCGAGAAAGGTGGGTAACTTTGGTTATGGGAGTCGACAACCGACCACAAAGGTTGTTGTTGAAGTTCCAGATAAAAAAATAGCCATTTTTGAAGAGCCAGATACGAAACGAATTGACACAAATCAAGCTAAGATGGAAAGTGGGGGGAAGAAGTTTGTTAGTTGGGAAGCTGACCCATATCCCATTGCTGATTCGTATGGCAAACCTGTGCTCATGATTGAGAACTCTGTTGGAGAGTCAGCAATCAATCTTAGTCAGCATGATGCTTCAGCAGCCTTGCATGGAACAACAACATTTATTCCTCCCCCTTCAACAGCAAGGTCTGTGTCAATGAGAGATATGGGTACAGAGATGACACCTATTGCTAGCCAAGAACCCTCCAGGACTGGAACTCCTGTGGGGGCAACAACACCAATTCGCAGTCCTACTAATTCAAGGCCATCAACTCCTGGCAGAGCTGCACCAGCTTCATCTCTGATTGACCAAGAGGCTAACAAGGAGTTGTCTGAAAAGGAGTTACAAATGAAAACTAGGAGAGAGATAATGGCTCTCGGGACACAGCTAGGCAAGATGAACATTGCTGCCTGGGCTAGCAAAGAGGAGGATAAGGATGCATCTACGTCGCTGAGAACTGTACCAGCAGAACAACCGGGTAAAAGTGTTATTGAGACACGTGCAGCAGCTTGGGAGGAGGCTGAGAAAGCCAAGTATATAGCTAGGTTCAAACGGGAAGAGTTGAAAATTCAAGCATGGGAAAACCATCAGAAAGCAAAAACAGAAGCCGAGATGAGGAAGATTGAGGTAGAGGTTGAAAGGATAAGGGGACGGGCACATAGTAAGCTTATGAATAAGTTAGCTGCTACGAGGCATAAGGCTCAAGAAAAGCGAGCAGCATCAGAGGCCAAGAGAAACCAGCAAGCAGCAAAAACGGAGCAGCAAGCAGAGTATATTCGGAGAACTGGCCGCATCCCTTCCTCGTTTTCTTGTTGGGGTTGGTGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

515

Amino Acids

56.57

Weight (kDa)

9.07

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 574
AciI CCGC 4 cut(s) 33, 168, 493, 1504
AclWI GGATC 4 cut(s) 10, 23, 101, 547
AcoI YGGCCR 1 cut(s) 1501
AcsI RAATTY 2 cut(s) 119, 1281
AcuI CTGAAG 1 cut(s) 792
AcvI CACGTG 1 cut(s) 1214
AfaI GTAC 2 cut(s) 886, 1176
AfiI CCNNNNNNNGG 5 cut(s) 32, 306, 502, 503, 1329
AflIII ACRYGT 1 cut(s) 1211
AgsI TTSAA 9 cut(s) 277, 602, 632, 852, 975, 1264, 1279, 1286, 1352
AjnI CCWGG 4 cut(s) 49, 920, 988, 1124
AleI CACNNNNGTG 1 cut(s) 466
Alw21I GWGCWC 2 cut(s) 753, 1541
Alw26I GTCTC 1 cut(s) 1202
AlwI GGATC 4 cut(s) 10, 23, 101, 547
Ama87I CYCGRG 1 cut(s) 1091
AoxI GGCC 3 cut(s) 977, 1440, 1501
ApoI RAATTY 2 cut(s) 119, 1281
AspLEI GCGC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 1191
AsuHPI GGTGA 1 cut(s) 39
AsuNHI GCTAGC 2 cut(s) 905, 1130
AvaI CYCGRG 1 cut(s) 1091
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 2 cut(s) 403, 1372
BamHI GGATCC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 1214
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 753, 1541
BccI CCATC 5 cut(s) 451, 496, 667, 988, 1308
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BciT130I CCWGG 4 cut(s) 51, 922, 990, 1126
BcnI CCSGG 1 cut(s) 1191
BcoDI GTCTC 1 cut(s) 1202
BfaI CTAG 5 cut(s) 906, 1071, 1103, 1131, 1257
BfmI CTRYAG 1 cut(s) 243
BglII AGATCT 1 cut(s) 131
Bme1390I CCNGG 5 cut(s) 51, 922, 990, 1126, 1191
BmeT110I CYCGRG 1 cut(s) 1091
BmiI GGNNCC 3 cut(s) 17, 311, 491
BmrFI CCNGG 5 cut(s) 51, 922, 990, 1126, 1191
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 8 cut(s) 246, 340, 448, 793, 1141, 1163, 1442, 1515
BmtI GCTAGC 2 cut(s) 909, 1134
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 904
BpuEI CTTGAG 1 cut(s) 1401
BpuMI CCSGG 1 cut(s) 1191
BsaAI YACGTR 1 cut(s) 1214
BsaJI CCNNGG 2 cut(s) 50, 1125
BsaXI ACNNNNNCTCC 2 cut(s) 916, 946
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 306, 502, 503, 1329
Bse1I ACTGG 3 cut(s) 78, 931, 1504
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 2 cut(s) 723, 1116
BseBI CCWGG 4 cut(s) 51, 922, 990, 1126
BseDI CCNNGG 2 cut(s) 50, 1125
BseGI GGATG 5 cut(s) 368, 443, 460, 1156, 1506
BseLI CCNNNNNNNGG 5 cut(s) 32, 306, 502, 503, 1329
BseMI GCAATG 2 cut(s) 723, 1116
BseMII CTCAG 4 cut(s) 41, 264, 1157, 1227
BseNI ACTGG 3 cut(s) 78, 931, 1504
BseRI GAGGAG 2 cut(s) 1154, 1244
BseSI GKGCMC 2 cut(s) 403, 1372
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 2 cut(s) 984, 1236
BshFI GGCC 3 cut(s) 979, 1442, 1503
BsiHKAI GWGCWC 2 cut(s) 753, 1541
BsiHKCI CYCGRG 1 cut(s) 1091
BsiSI CCGG 1 cut(s) 1190
BslFI GGGAC 2 cut(s) 1108, 1377
BslI CCNNNNNNNGG 5 cut(s) 32, 306, 502, 503, 1329
BsmAI GTCTC 1 cut(s) 1202
BsmFI GGGAC 2 cut(s) 1108, 1377
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 3 cut(s) 979, 1442, 1503
BsoBI CYCGRG 1 cut(s) 1091
Bsp1286I GDGCHC 4 cut(s) 403, 753, 1372, 1541
Bsp143I GATC 4 cut(s) 15, 106, 131, 539
BspACI CCGC 4 cut(s) 33, 168, 493, 1504
BspANI GGCC 3 cut(s) 979, 1442, 1503
BspCNI CTCAG 4 cut(s) 40, 263, 1158, 1228
BspHI TCATGA 2 cut(s) 753, 1541
BspLI GGNNCC 3 cut(s) 17, 311, 491
BspOI GCTAGC 2 cut(s) 909, 1134
BspPI GGATC 4 cut(s) 10, 23, 101, 547
BspQI GCTCTTC 1 cut(s) 627
BsrDI GCAATG 2 cut(s) 723, 1116
BsrI ACTGG 3 cut(s) 78, 931, 1504
BssECI CCNNGG 2 cut(s) 50, 1125
BssMI GATC 4 cut(s) 15, 106, 131, 539
Bst2UI CCWGG 4 cut(s) 51, 922, 990, 1126
Bst4CI ACNGT 2 cut(s) 269, 1174
Bst6I CTCTTC 3 cut(s) 83, 627, 1266
BstAPI GCANNNNNTGC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 1214
BstC8I GCNNGC 7 cut(s) 399, 510, 907, 1132, 1428, 1458, 1479
BstDEI CTNAG 7 cut(s) 27, 250, 260, 669, 791, 1166, 1236
BstF5I GGATG 5 cut(s) 368, 443, 460, 1156, 1506
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 18, 109, 134, 542
BstMAI GTCTC 1 cut(s) 1202
BstMBI GATC 4 cut(s) 15, 106, 131, 539
BstMWI GCNNNNNNNGC 8 cut(s) 398, 421, 526, 812, 1004, 1127, 1241, 1439
BstNI CCWGG 4 cut(s) 51, 922, 990, 1126
BstSCI CCNGG 5 cut(s) 49, 920, 988, 1124, 1189
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 2 cut(s) 403, 1372
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 3 cut(s) 15, 106, 131
BstXI CCANNNNNNTGG 1 cut(s) 450
BstYI RGATCY 3 cut(s) 15, 106, 131
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 3 cut(s) 979, 1442, 1503
BtsCI GGATG 5 cut(s) 368, 443, 460, 1156, 1506
Cac8I GCNNGC 7 cut(s) 399, 510, 907, 1132, 1428, 1458, 1479
CciI TCATGA 2 cut(s) 753, 1541
CfoI GCGC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 885, 1175
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 6 cut(s) 347, 754, 800, 821, 1290, 1542
CviQI GTAC 2 cut(s) 885, 1175
DdeI CTNAG 7 cut(s) 27, 250, 260, 669, 791, 1166, 1236
DpnI GATC 4 cut(s) 17, 108, 133, 541
DpnII GATC 4 cut(s) 15, 106, 131, 539
EaeI YGGCCR 1 cut(s) 1501
Eam1104I CTCTTC 3 cut(s) 83, 627, 1266
EarI CTCTTC 3 cut(s) 83, 627, 1266
Eco57I CTGAAG 1 cut(s) 792
Eco72I CACGTG 1 cut(s) 1214
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 1091
EcoRII CCWGG 4 cut(s) 49, 920, 988, 1124
EcoT22I ATGCAT 1 cut(s) 1156
FaeI CATG 6 cut(s) 350, 757, 803, 824, 1293, 1545
FaqI GGGAC 2 cut(s) 1108, 1377
FatI CATG 6 cut(s) 346, 753, 799, 820, 1289, 1541
FblI GTMKAC 1 cut(s) 574
FokI GGATG 5 cut(s) 355, 430, 467, 1163, 1493
FspBI CTAG 5 cut(s) 906, 1071, 1103, 1131, 1257
GlaI GCGC 1 cut(s) 423
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 904
HaeIII GGCC 3 cut(s) 979, 1442, 1503
HapII CCGG 1 cut(s) 1190
HhaI GCGC 1 cut(s) 424
Hin1II CATG 6 cut(s) 350, 757, 803, 824, 1293, 1545
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 1379
HinfI GANTC 6 cut(s) 113, 239, 478, 571, 731, 776
HpaII CCGG 1 cut(s) 1190
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 9 cut(s) 145, 175, 253, 387, 1017, 1048, 1305, 1438, 1494
Hpy188III TCNNGA 9 cut(s) 110, 212, 300, 543, 608, 754, 1093, 1418, 1542
Hpy8I GTNNAC 1 cut(s) 575
Hpy99I CGWCG 1 cut(s) 1165
HpyAV CCTTC 9 cut(s) 88, 150, 218, 271, 333, 382, 436, 858, 1521
HpyCH4III ACNGT 2 cut(s) 269, 1174
HpyCH4IV ACGT 2 cut(s) 1160, 1213
HpyCH4V TGCA 7 cut(s) 183, 461, 520, 820, 1001, 1154, 1217
HpyF10VI GCNNNNNNNGC 8 cut(s) 398, 421, 526, 812, 1004, 1127, 1241, 1439
HpyF3I CTNAG 7 cut(s) 27, 250, 260, 669, 791, 1166, 1236
HpySE526I ACGT 2 cut(s) 1160, 1213
Hsp92II CATG 6 cut(s) 350, 757, 803, 824, 1293, 1545
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 4 cut(s) 15, 106, 131, 539
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 1471
LweI GCATC 8 cut(s) 246, 340, 448, 793, 1141, 1163, 1442, 1515
MaeI CTAG 5 cut(s) 906, 1071, 1103, 1131, 1257
MaeII ACGT 2 cut(s) 1160, 1213
MaeIII GTNAC 3 cut(s) 263, 554, 1056
MalI GATC 4 cut(s) 17, 108, 133, 541
MboI GATC 4 cut(s) 15, 106, 131, 539
MboII GAAGA 8 cut(s) 97, 100, 116, 329, 644, 700, 1283, 1345
MflI RGATCY 3 cut(s) 15, 106, 131
MhlI GDGCHC 4 cut(s) 403, 753, 1372, 1541
MluCI AATT 6 cut(s) 119, 295, 651, 954, 970, 1281
MlyI GAGTC 4 cut(s) 233, 487, 580, 785
MmeI TCCRAC 3 cut(s) 506, 517, 751
Mph1103I ATGCAT 1 cut(s) 1156
MslI CAYNNNNRTG 2 cut(s) 448, 466
MspI CCGG 1 cut(s) 1190
MspR9I CCNGG 5 cut(s) 51, 922, 990, 1126, 1191
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 4 cut(s) 51, 922, 990, 1126
MwoI GCNNNNNNNGC 8 cut(s) 398, 421, 526, 812, 1004, 1127, 1241, 1439
NciI CCSGG 1 cut(s) 1191
NdeII GATC 4 cut(s) 15, 106, 131, 539
NheI GCTAGC 2 cut(s) 905, 1130
NlaIII CATG 6 cut(s) 350, 757, 803, 824, 1293, 1545
NlaIV GGNNCC 3 cut(s) 17, 311, 491
NmeAIII GCCGAG 1 cut(s) 1348
NmuCI GTSAC 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 1156
OliI CACNNNNGTG 1 cut(s) 466
PagI TCATGA 2 cut(s) 753, 1541
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 113, 731
PfoI TCCNGGA 1 cut(s) 920
PleI GAGTC 4 cut(s) 233, 486, 579, 784
PmaCI CACGTG 1 cut(s) 1214
PmlI CACGTG 1 cut(s) 1214
PpsI GAGTC 4 cut(s) 233, 486, 579, 784
Ppu21I YACGTR 1 cut(s) 1214
Psp6I CCWGG 4 cut(s) 49, 920, 988, 1124
PspCI CACGTG 1 cut(s) 1214
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 4 cut(s) 49, 920, 988, 1124
PspN4I GGNNCC 3 cut(s) 17, 311, 491
PsuI RGATCY 3 cut(s) 15, 106, 131
RsaI GTAC 2 cut(s) 886, 1176
RsaNI GTAC 2 cut(s) 885, 1175
RseI CAYNNNNRTG 2 cut(s) 448, 466
SalI GTCGAC 1 cut(s) 573
SapI GCTCTTC 1 cut(s) 627
Sau3AI GATC 4 cut(s) 15, 106, 131, 539
SchI GAGTC 4 cut(s) 233, 487, 580, 785
ScrFI CCNGG 5 cut(s) 51, 922, 990, 1126, 1191
SduI GDGCHC 4 cut(s) 403, 753, 1372, 1541
SfaNI GCATC 8 cut(s) 246, 340, 448, 793, 1141, 1163, 1442, 1515
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 448, 466
SmlI CTYRAG 1 cut(s) 1416
SmoI CTYRAG 1 cut(s) 1416
Sse9I AATT 6 cut(s) 119, 295, 651, 954, 970, 1281
SsiI CCGC 4 cut(s) 33, 168, 493, 1504
SspMI CTAG 5 cut(s) 906, 1071, 1103, 1131, 1257
StyD4I CCNGG 5 cut(s) 49, 920, 988, 1124, 1189
TaaI ACNGT 2 cut(s) 269, 1174
TaiI ACGT 2 cut(s) 1163, 1216
TaqI TCGA 4 cut(s) 221, 227, 542, 574
TasI AATT 6 cut(s) 119, 295, 651, 954, 970, 1281
TauI GCSGC 1 cut(s) 1506
TfiI GAWTC 2 cut(s) 113, 731
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 5 cut(s) 168, 999, 1079, 1127, 1400
TspGWI ACGGA 1 cut(s) 1484
XapI RAATTY 2 cut(s) 119, 1281
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 5 cut(s) 906, 1071, 1103, 1131, 1257
Zsp2I ATGCAT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.