RchiOBHm_Chr4g0446081

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004396
Physical Location & Seq
Reverse (-)
66371279 .. 66375467
4189 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41361

Sequence Viewer

Length: 1551 bp
ATGCTATCACAGACCACTTCTATGGATTACGAAAGGATCCAAAAGCCTCAGGTTGGTGGTGGTGGGGGATTTTCACCTGGGAAGTTGAGGACTATGCTACTTGGGGTAGAGAAGAAGAGGAAGGAGCAGGAAGACTCTGTATCTACTTTCAATTTGAGATCTCAAGCTTCTGTGTTTGAAGTCACTGGTGGTGCTGATAACTGCAAAGATGTAGATGTTGTGAGTGTTCATCCTGAATGCTCAACTTCAACTGCTGCTGATTTATCAGGCCCAGAGATGATGAGTGACCGCAGGTTTAAGGACAATGCATTAGGCAATTTCAGAGCTAGGAATCAAGAAGACCCGTCGTTAGATTATGATAGTGGACATGATGCAATGAATGTGTCGGCATCCATCTTTGAGTTTCAGAAGGCAGAAAGGGGCACACAAAGACTGCCTCTTGCACCTTTCTCCAAACCAGCTCCATCCAAATGGGATGATGCTCAGAAGTGGATAGCAAGTCCAACTTGGAGCAGGCCGAAGAGTGGGCAAGCAGTTGGACTGCGAAAGGCGGGTACCCTTGGTAATGGGAGTCGCCAACCTACGACAAAGGTTGTTGTTGAAGTTCCAGATCCAAAAGTAGCTAACTTTGACGAGCCGGATACGAAACGGATTGACACAAATCAAGCTAAGATGGAAAGTGCGGGGCAGAAGTTTGTTAGCTGGGAGGCTGACCCATACCACAGTGCTGATTCCTATGGCAAGCCTGTGCTCATGATCGAAAATTCTGTTGGAGAGTCAGCAATCAATCTTAGCCGGCTTGATTCTTCTGGAGCTTTCCATGGCACAACAACATTTATTCCTCCCCCTTCAACGGCAAGGTCTGTGTCAATGAGAGATATGGGTACAGAGATGACACCAATTGCTAGCCAGGAACCTTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCAATTCGTAGTCCAACTAATTCAAGGCCATCTACTCCTACCAGAGCCACACAAGCTTCATCTCTGATTGCTCCATTTATTGACCACATAGATCCTAACAAGGAGTTGTCTGAGAAGGAGAAAACCAGGAGAGAGATAATGGCTCTTGGGACACAGCTGGGTAAGATGAATATTGCTGCCTGGGCTAGCAAAGAAGAGGATAAAGATGCATCAACATCAGTGAAATCTGCACCAGAAGAACAACTAGCTAACAGTGTTATTGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATTTGGCTAGGTTCAAACGTGAAGAGATGAAAATTCAAGCGTGGGAAAATCATCAGAAAGCACAAACAGAAGCAGAGATGAGGAAAGTTGAGGTAGAGATTGAAAGGATAAGGGGACGGGCACACAGTAAGCTAATGAATAAGTTAGCAGCTGCAAGGCATAAGGCTCAAGAAAAGCGAGCAGCAGCTGAGGCCAAGAGAAACCAGCAAGCTGCAAAAACGGAGCAACAAGCAGAGTACATTCGCAGAACTGGCCGAATCCCTTCCACATTTTCTTGTTGGGGTTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

516

Amino Acids

56.84

Weight (kDa)

8.9

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 404 - 507 5.3e-34 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 282
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AciI CCGC 3 cut(s) 289, 551, 683
AclWI GGATC 4 cut(s) 31, 44, 605, 1037
AcoI YGGCCR 1 cut(s) 1507
AcsI RAATTY 2 cut(s) 763, 1287
AcvI CACGTG 1 cut(s) 1220
AfaI GTAC 3 cut(s) 556, 886, 1493
AfiI CCNNNNNNNGG 3 cut(s) 53, 524, 853
AflIII ACRYGT 1 cut(s) 1217
AgsI TTSAA 9 cut(s) 151, 179, 249, 602, 852, 975, 1270, 1292, 1358
AjnI CCWGG 5 cut(s) 76, 909, 920, 1076, 1130
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
Alw21I GWGCWC 2 cut(s) 753, 1547
Alw26I GTCTC 1 cut(s) 1208
AlwI GGATC 4 cut(s) 31, 44, 605, 1037
AlwNI CAGNNNCTG 1 cut(s) 1442
AoxI GGCC 5 cut(s) 268, 515, 977, 1446, 1507
ApeKI GCWGC 9 cut(s) 254, 1127, 1223, 1226, 1403, 1406, 1436, 1439, 1466
ApoI RAATTY 2 cut(s) 763, 1287
Asp700I GAANNNNTTC 1 cut(s) 1516
Asp718I GGTACC 1 cut(s) 554
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 66
AsuNHI GCTAGC 2 cut(s) 905, 1136
AxyI CCTNAGG 1 cut(s) 48
BaeGI GKGCMC 2 cut(s) 425, 1378
BamHI GGATCC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 554
BbrPI CACGTG 1 cut(s) 1220
BbsI GAAGAC 2 cut(s) 138, 345
Bbv12I GWGCWC 2 cut(s) 753, 1547
BbvCI CCTCAGC 1 cut(s) 1443
BbvI GCAGC 9 cut(s) 241, 1114, 1235, 1238, 1393, 1415, 1448, 1451, 1453
BccI CCATC 4 cut(s) 401, 472, 667, 988
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 5 cut(s) 78, 911, 922, 1078, 1132
BciVI GTATCC 1 cut(s) 634
BcoDI GTCTC 1 cut(s) 1208
BfaI CTAG 5 cut(s) 327, 906, 1137, 1196, 1263
BfuAI ACCTGC 1 cut(s) 282
BfuI GTATCC 1 cut(s) 634
BglII AGATCT 1 cut(s) 158
BisI GCNGC 9 cut(s) 255, 1128, 1224, 1227, 1404, 1407, 1437, 1440, 1467
BlsI GCNGC 9 cut(s) 256, 1129, 1225, 1228, 1405, 1408, 1438, 1441, 1468
Bme1390I CCNGG 5 cut(s) 78, 911, 922, 1078, 1132
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 3 cut(s) 38, 556, 915
BmrFI CCNGG 5 cut(s) 78, 911, 922, 1078, 1132
BmsI GCATC 5 cut(s) 361, 398, 469, 1147, 1169
BmtI GCTAGC 2 cut(s) 909, 1140
BpiI GAAGAC 2 cut(s) 138, 345
BpmI CTGGAG 2 cut(s) 831, 918
Bpu10I CCTNAGC 1 cut(s) 1443
BpuEI CTTGAG 2 cut(s) 147, 1407
BsaAI YACGTR 1 cut(s) 1220
BsaJI CCNNGG 4 cut(s) 77, 559, 820, 1131
BsaXI ACNNNNNCTCC 2 cut(s) 916, 946
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 524, 853
Bse118I RCCGGY 1 cut(s) 795
Bse1I ACTGG 4 cut(s) 190, 931, 935, 1510
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 5 cut(s) 78, 911, 922, 1078, 1132
BseDI CCNNGG 4 cut(s) 77, 559, 820, 1131
BseGI GGATG 4 cut(s) 229, 389, 464, 481
BseLI CCNNNNNNNGG 3 cut(s) 53, 524, 853
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 5 cut(s) 62, 497, 1053, 1233, 1434
BseNI ACTGG 4 cut(s) 190, 931, 935, 1510
BseRI GAGGAG 1 cut(s) 1250
BseSI GKGCMC 2 cut(s) 425, 1378
BseXI GCAGC 9 cut(s) 241, 1114, 1235, 1238, 1393, 1415, 1448, 1451, 1453
BseYI CCCAGC 2 cut(s) 702, 1108
BsgI GTGCAG 2 cut(s) 1164, 1242
BshFI GGCC 5 cut(s) 270, 517, 979, 1448, 1509
BshNI GGYRCC 1 cut(s) 554
BsiHKAI GWGCWC 2 cut(s) 753, 1547
BsiSI CCGG 2 cut(s) 638, 796
BslFI GGGAC 2 cut(s) 1114, 1383
BslI CCNNNNNNNGG 3 cut(s) 53, 524, 853
BsmAI GTCTC 1 cut(s) 1208
BsmFI GGGAC 2 cut(s) 1114, 1383
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 5 cut(s) 270, 517, 979, 1448, 1509
Bsp1286I GDGCHC 4 cut(s) 425, 753, 1378, 1547
Bsp143I GATC 5 cut(s) 36, 158, 610, 756, 1042
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 3 cut(s) 289, 551, 683
BspANI GGCC 5 cut(s) 270, 517, 979, 1448, 1509
BspCNI CTCAG 5 cut(s) 61, 496, 1054, 1234, 1435
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 3 cut(s) 38, 556, 915
BspMI ACCTGC 1 cut(s) 282
BspOI GCTAGC 2 cut(s) 909, 1140
BspPI GGATC 4 cut(s) 31, 44, 605, 1037
BspT107I GGYRCC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 795
BsrI ACTGG 4 cut(s) 190, 931, 935, 1510
BssAI RCCGGY 1 cut(s) 795
BssECI CCNNGG 4 cut(s) 77, 559, 820, 1131
BssMI GATC 5 cut(s) 36, 158, 610, 756, 1042
BssT1I CCWWGG 2 cut(s) 559, 820
Bst2UI CCWGG 5 cut(s) 78, 911, 922, 1078, 1132
Bst4CI ACNGT 3 cut(s) 725, 1205, 1382
Bst6I CTCTTC 4 cut(s) 110, 515, 1140, 1272
BstBAI YACGTR 1 cut(s) 1220
BstC8I GCNNGC 8 cut(s) 515, 531, 743, 797, 907, 1138, 1434, 1464
BstDEI CTNAG 7 cut(s) 48, 483, 669, 791, 1062, 1242, 1443
BstDSI CCRYGG 1 cut(s) 820
BstF5I GGATG 4 cut(s) 229, 389, 464, 481
BstKTI GATC 5 cut(s) 39, 161, 613, 759, 1045
BstMAI GTCTC 1 cut(s) 1208
BstMBI GATC 5 cut(s) 36, 158, 610, 756, 1042
BstMWI GCNNNNNNNGC 5 cut(s) 1004, 1133, 1247, 1445, 1506
BstNI CCWGG 5 cut(s) 78, 911, 922, 1078, 1132
BstSCI CCNGG 5 cut(s) 76, 909, 920, 1076, 1130
BstSLI GKGCMC 2 cut(s) 425, 1378
BstV1I GCAGC 9 cut(s) 241, 1114, 1235, 1238, 1393, 1415, 1448, 1451, 1453
BstV2I GAAGAC 2 cut(s) 138, 345
BstX2I RGATCY 4 cut(s) 36, 158, 610, 1042
BstXI CCANNNNNNTGG 3 cut(s) 22, 471, 1258
BstYI RGATCY 4 cut(s) 36, 158, 610, 1042
Bsu36I CCTNAGG 1 cut(s) 48
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 5 cut(s) 270, 517, 979, 1448, 1509
BtgI CCRYGG 1 cut(s) 820
BtsCI GGATG 4 cut(s) 229, 389, 464, 481
BtsIMutI CAGTG 5 cut(s) 183, 730, 942, 1176, 1210
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 8 cut(s) 515, 531, 743, 797, 907, 1138, 1434, 1464
CaiI CAGNNNCTG 1 cut(s) 1442
CciI TCATGA 1 cut(s) 753
Cfr10I RCCGGY 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 555, 885, 1492
CviAII CATG 4 cut(s) 368, 754, 821, 1230
CviQI GTAC 3 cut(s) 555, 885, 1492
DdeI CTNAG 7 cut(s) 48, 483, 669, 791, 1062, 1242, 1443
DpnI GATC 5 cut(s) 38, 160, 612, 758, 1044
DpnII GATC 5 cut(s) 36, 158, 610, 756, 1042
EaeI YGGCCR 1 cut(s) 1507
Eam1104I CTCTTC 4 cut(s) 110, 515, 1140, 1272
EarI CTCTTC 4 cut(s) 110, 515, 1140, 1272
Eco130I CCWWGG 2 cut(s) 559, 820
Eco72I CACGTG 1 cut(s) 1220
Eco81I CCTNAGG 1 cut(s) 48
EcoRII CCWGG 5 cut(s) 76, 909, 920, 1076, 1130
EcoT14I CCWWGG 2 cut(s) 559, 820
EcoT22I ATGCAT 2 cut(s) 310, 1162
ErhI CCWWGG 2 cut(s) 559, 820
FaeI CATG 4 cut(s) 371, 757, 824, 1233
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 2 cut(s) 1114, 1383
FatI CATG 4 cut(s) 367, 753, 820, 1229
FauI CCCGC 2 cut(s) 544, 676
Fnu4HI GCNGC 9 cut(s) 255, 1128, 1224, 1227, 1404, 1407, 1437, 1440, 1467
FokI GGATG 4 cut(s) 216, 376, 451, 488
Fsp4HI GCNGC 9 cut(s) 255, 1128, 1224, 1227, 1404, 1407, 1437, 1440, 1467
FspBI CTAG 5 cut(s) 327, 906, 1137, 1196, 1263
GluI GCNGC 9 cut(s) 255, 1128, 1224, 1227, 1404, 1407, 1437, 1440, 1467
GsaI CCCAGC 2 cut(s) 706, 1112
GsuI CTGGAG 2 cut(s) 831, 918
HaeIII GGCC 5 cut(s) 270, 517, 979, 1448, 1509
HapII CCGG 2 cut(s) 638, 796
Hin1II CATG 4 cut(s) 371, 757, 824, 1233
HindIII AAGCTT 2 cut(s) 165, 1005
HinfI GANTC 7 cut(s) 134, 331, 571, 731, 776, 803, 1512
HpaII CCGG 2 cut(s) 638, 796
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 6 cut(s) 323, 408, 486, 1017, 1063, 1311
Hpy188III TCNNGA 7 cut(s) 233, 335, 608, 754, 810, 1424, 1548
Hpy8I GTNNAC 1 cut(s) 365
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 6 cut(s) 115, 403, 858, 927, 1060, 1527
HpyCH4III ACNGT 3 cut(s) 725, 1205, 1382
HpyCH4IV ACGT 2 cut(s) 1219, 1273
HpyCH4V TGCA 9 cut(s) 204, 308, 374, 443, 1160, 1181, 1223, 1409, 1469
HpyF10VI GCNNNNNNNGC 5 cut(s) 1004, 1133, 1247, 1445, 1506
HpyF3I CTNAG 7 cut(s) 48, 483, 669, 791, 1062, 1242, 1443
HpySE526I ACGT 2 cut(s) 1219, 1273
Hsp92II CATG 4 cut(s) 371, 757, 824, 1233
KpnI GGTACC 1 cut(s) 558
KroI GCCGGC 1 cut(s) 795
KroNI GCCGGC 1 cut(s) 797
Kzo9I GATC 5 cut(s) 36, 158, 610, 756, 1042
LmnI GCTCC 6 cut(s) 124, 466, 510, 812, 1027, 1477
Lsp1109I GCAGC 9 cut(s) 241, 1114, 1235, 1238, 1393, 1415, 1448, 1451, 1453
LweI GCATC 5 cut(s) 361, 398, 469, 1147, 1169
MaeI CTAG 5 cut(s) 327, 906, 1137, 1196, 1263
MaeII ACGT 2 cut(s) 1219, 1273
MaeIII GTNAC 2 cut(s) 181, 284
MalI GATC 5 cut(s) 38, 160, 612, 758, 1044
MboI GATC 5 cut(s) 36, 158, 610, 756, 1042
MboII GAAGA 9 cut(s) 124, 127, 143, 350, 532, 798, 1157, 1199, 1289
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 4 cut(s) 36, 158, 610, 1042
MhlI GDGCHC 4 cut(s) 425, 753, 1378, 1547
MluCI AATT 7 cut(s) 151, 316, 763, 900, 954, 970, 1287
MlyI GAGTC 3 cut(s) 128, 580, 785
MmeI TCCRAC 4 cut(s) 517, 527, 751, 989
Mph1103I ATGCAT 2 cut(s) 310, 1162
MroNI GCCGGC 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 1516
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 2 cut(s) 20, 469
MspA1I CMGCKG 3 cut(s) 1108, 1406, 1442
MspI CCGG 2 cut(s) 638, 796
MspR9I CCNGG 5 cut(s) 78, 911, 922, 1078, 1132
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 5 cut(s) 78, 911, 922, 1078, 1132
MwoI GCNNNNNNNGC 5 cut(s) 1004, 1133, 1247, 1445, 1506
NaeI GCCGGC 1 cut(s) 797
NcoI CCATGG 1 cut(s) 820
NdeII GATC 5 cut(s) 36, 158, 610, 756, 1042
NgoMIV GCCGGC 1 cut(s) 795
NheI GCTAGC 2 cut(s) 905, 1136
NlaIII CATG 4 cut(s) 371, 757, 824, 1233
NlaIV GGNNCC 3 cut(s) 38, 556, 915
NmuCI GTSAC 2 cut(s) 181, 284
NsiI ATGCAT 2 cut(s) 310, 1162
PagI TCATGA 1 cut(s) 753
PctI GAATGC 1 cut(s) 242
PdiI GCCGGC 1 cut(s) 797
PdmI GAANNNNTTC 1 cut(s) 1516
PfeI GAWTC 4 cut(s) 331, 731, 803, 1512
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 9 cut(s) 256, 1129, 1225, 1228, 1405, 1408, 1438, 1441, 1468
PleI GAGTC 3 cut(s) 128, 579, 784
PmaCI CACGTG 1 cut(s) 1220
PmlI CACGTG 1 cut(s) 1220
PpsI GAGTC 3 cut(s) 128, 579, 784
Ppu21I YACGTR 1 cut(s) 1220
Psp6I CCWGG 5 cut(s) 76, 909, 920, 1076, 1130
PspCI CACGTG 1 cut(s) 1220
PspFI CCCAGC 2 cut(s) 702, 1108
PspGI CCWGG 5 cut(s) 76, 909, 920, 1076, 1130
PspN4I GGNNCC 3 cut(s) 38, 556, 915
PspPI GGNCC 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 1442
PsuI RGATCY 4 cut(s) 36, 158, 610, 1042
PvuII CAGCTG 3 cut(s) 1108, 1406, 1442
RsaI GTAC 3 cut(s) 556, 886, 1493
RsaNI GTAC 3 cut(s) 555, 885, 1492
RseI CAYNNNNRTG 2 cut(s) 20, 469
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 9 cut(s) 255, 1128, 1224, 1227, 1404, 1407, 1437, 1440, 1467
Sau3AI GATC 5 cut(s) 36, 158, 610, 756, 1042
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 3 cut(s) 128, 580, 785
ScrFI CCNGG 5 cut(s) 78, 911, 922, 1078, 1132
SduI GDGCHC 4 cut(s) 425, 753, 1378, 1547
SfaNI GCATC 5 cut(s) 361, 398, 469, 1147, 1169
SmiMI CAYNNNNRTG 2 cut(s) 20, 469
SmlI CTYRAG 2 cut(s) 162, 1422
SmoI CTYRAG 2 cut(s) 162, 1422
Sse9I AATT 7 cut(s) 151, 316, 763, 900, 954, 970, 1287
SsiI CCGC 3 cut(s) 289, 551, 683
SspI AATATT 1 cut(s) 1123
SspMI CTAG 5 cut(s) 327, 906, 1137, 1196, 1263
StyD4I CCNGG 5 cut(s) 76, 909, 920, 1076, 1130
StyI CCWWGG 2 cut(s) 559, 820
TaaI ACNGT 3 cut(s) 725, 1205, 1382
TaiI ACGT 2 cut(s) 1222, 1276
TaqI TCGA 1 cut(s) 759
TasI AATT 7 cut(s) 151, 316, 763, 900, 954, 970, 1287
TatI WGTACW 1 cut(s) 1491
TfiI GAWTC 4 cut(s) 331, 731, 803, 1512
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 5 cut(s) 190, 730, 942, 1176, 1210
TseFI GTSAC 2 cut(s) 181, 284
TseI GCWGC 9 cut(s) 254, 1127, 1223, 1226, 1403, 1406, 1436, 1439, 1466
Tsp45I GTSAC 2 cut(s) 181, 284
TspDTI ATGAA 6 cut(s) 218, 392, 999, 1133, 1298, 1406
TspGWI ACGGA 2 cut(s) 664, 1490
TspRI CASTG 5 cut(s) 190, 730, 942, 1176, 1210
XapI RAATTY 2 cut(s) 763, 1287
XmnI GAANNNNTTC 1 cut(s) 1516
XspI CTAG 5 cut(s) 327, 906, 1137, 1196, 1263
Zsp2I ATGCAT 2 cut(s) 310, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.