Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004396

Physical Location & Seq

Genomic Coordinates Forward (+)

475372 .. 477911

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCTAGTGACCGGCGATTGAAGGATAGCACATTAGTCAATTCAAGAATTAGGAACCAAGAAGACCCTTCATTAGATTATGATAGTGGGCATGATGCAATGGGTGTGTCCTCATCCATATTTGAGTTTCAGAAGGCAGAGCGTGCCCCACAAAGGGTGCCTCTTGCGCCGTTCTCCAAACCAGCACCGTCCAAATGGGATGATGCTCAGAAATGGATAGCAAGCCCAACTTCAAACCGGCCAAAGATGGGGCAGGCTCAAATGCAGGTTGGGCAAGGAGTTGGATCGCGAAAGGCTGGTAGCTTTGGTTATGGGAGTAAACAATTGAGCACAAAGGTTGTTGTTGAAGTTCCAGATCAAAAAGTAGATATTTTTGAAGAACCAGATACGAAGCGAATTGACACAAATCAATCTAAGATGGAAAGTGGAGGGCAGAAGTGTGTAAGTTGGGAGCCTGATCCATATCCCATTGCCGATTCATATGGCAAATCAGTGCTCATGGTTGAGAACTCTGTCGGAGAGTCAGCAATCAATCTTAGCCAGCATGATTCTTCTACAGCGTTTCATGGAACAACAACATTTATTCCTCCTCCTTCAACCGCAAGATCTGTCTCAATGAGAGATATGGGTACAGAGATGACGCCTATTGCTAGCCAGGAACCCTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCGATTCGCAGTCCTACTAATTCAAGGCCATCAACTCCTAGCAGAGCTGCGCAAGCTTCATCTCCAATCAACCAGAATCCTAACAAGGAGTTGTCTGAAAAGGAGTTACAAATGAAAACTAGGAGAGAGATAATGGTTCTTGGGACACAGTTGGGTAAGATGAACATCGCTGCTTGGGCTAGCAAGGAGGAGGATAAGGGTGCATCCACGTCACAGAAAACTACACCAGAAGAACAACCGGGGAAAAGCATTGTTGAGACACGTGCAGCAGCATGGGAAGAAGCTGAGAAAGCCAAGTATATGGCTAGGTTCAAGCGTGAAGAGATGAAAATACAAGCTTGGGAAAATCATCAGAAAGCAAAAACAGAAGCTGAGATGAGGAAAATCGAGGTAGAGGTTGAAAGGATAAGAGGACGCGCTAATGGCAAGCTTATGAATAAGTTGGCAGCTGCAAGACATAAGGCTCAAGAAAAGCGAGCAGCAGCGGAGGCCAGGAGAAACCGGCAAGCAGCGAAAACAGAACATCAAGCAGAGTACATTCGCAAAACCGGTCGCATCCCGTCCTCGTTTTGGTGTTGGGGTTGGTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

430

Amino Acids

47.6

Weight (kDa)

9.49

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170
fragaria_vesca	FvH4_4g36350 FvH4_4g36350 FvH4_4g36350
malus_domestica	MD13G1009800.v1.1 MD16G1008100.v1.1
prunus_persica	Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1
pyrus_communis	pycom13g00830 pycom16g00790
rosa_chinensis	RchiOBHm_Chr4g0446081
rosa_laevigata	RLG00000005693
rosa_multiflora	Rmu_sc0007511.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386490
rosa_rugosa	Rorug04G0367200 Rorug04G0367300 Rorug04G0367400 Rorug04G0367500 Rorug04G0367600 Rorug04G0367700 Rorug04G0367800
rosa_samantha	Rh4AG429300 Rh4BG438800 Rh4CG456100 Rh4DG437000
rosa_wichuraiana	Rw4G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	747
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	2 cut(s)	289, 1113
AciI	CCGC	2 cut(s)	600, 1181
AclWI	GGATC	2 cut(s)	292, 452
AcoI	YGGCCR	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	959
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	2 cut(s)	631, 1232
AfiI	CCNNNNNNNGG	4 cut(s)	153, 154, 248, 1266
AflIII	ACRYGT	1 cut(s)	956
AgeI	ACCGGT	1 cut(s)	1244
AgsI	TTSAA	9 cut(s)	22, 45, 234, 347, 377, 597, 720, 1009, 1097
AjiI	CACGTC	1 cut(s)	906
AjnI	CCWGG	3 cut(s)	654, 665, 1187
AluBI	AGCT	8 cut(s)	303, 743, 752, 980, 1034, 1067, 1126, 1145
AluI	AGCT	8 cut(s)	303, 743, 752, 980, 1034, 1067, 1126, 1145
Alw21I	GWGCWC	3 cut(s)	332, 498, 1286
Alw26I	GTCTC	2 cut(s)	616, 947
AlwI	GGATC	2 cut(s)	292, 452
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	239, 722, 1185
ApeKI	GCWGC	9 cut(s)	743, 866, 962, 965, 1142, 1145, 1175, 1178, 1205
AsiGI	ACCGGT	1 cut(s)	1244
AspLEI	GCGC	3 cut(s)	169, 748, 1115
AsuC2I	CCSGG	1 cut(s)	936
AsuNHI	GCTAGC	2 cut(s)	650, 875
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	959
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	3 cut(s)	332, 498, 1286
BbvI	GCAGC	9 cut(s)	730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
BccI	CCATC	3 cut(s)	241, 412, 733
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	3 cut(s)	656, 667, 1189
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	616, 947
BfaI	CTAG	6 cut(s)	6, 651, 735, 816, 876, 1002
BfmI	CTRYAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	605
BisI	GCNGC	9 cut(s)	744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
BlsI	GCNGC	9 cut(s)	745, 868, 964, 967, 1144, 1147, 1177, 1180, 1207
Bme1390I	CCNGG	4 cut(s)	656, 667, 936, 1189
BmgBI	CACGTC	1 cut(s)	906
BmiI	GGNNCC	4 cut(s)	56, 159, 453, 660
BmrFI	CCNGG	4 cut(s)	656, 667, 936, 1189
BmsI	GCATC	4 cut(s)	85, 193, 908, 1260
BmtI	GCTAGC	2 cut(s)	654, 879
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	649, 663
BpuEI	CTTGAG	1 cut(s)	1146
BpuMI	CCSGG	1 cut(s)	936
BsaAI	YACGTR	1 cut(s)	959
BsaBI	GATNNNNATC	2 cut(s)	462, 860
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	935
BsaWI	WCCGGW	1 cut(s)	1244
BsaXI	ACNNNNNCTCC	2 cut(s)	661, 691
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 154, 248, 1266
Bse118I	RCCGGY	4 cut(s)	12, 237, 1197, 1244
Bse1I	ACTGG	2 cut(s)	676, 680
Bse3DI	GCAATG	2 cut(s)	105, 468
Bse8I	GATNNNNATC	2 cut(s)	462, 860
BseBI	CCWGG	3 cut(s)	656, 667, 1189
BseDI	CCNNGG	1 cut(s)	935
BseGI	GGATG	4 cut(s)	113, 205, 899, 1251
BseJI	GATNNNNATC	2 cut(s)	462, 860
BseLI	CCNNNNNNNGG	4 cut(s)	153, 154, 248, 1266
BseMI	GCAATG	2 cut(s)	105, 468
BseMII	CTCAG	3 cut(s)	221, 972, 1059
BseNI	ACTGG	2 cut(s)	676, 680
BseRI	GAGGAG	2 cut(s)	579, 899
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	9 cut(s)	730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
BsgI	GTGCAG	1 cut(s)	981
Bsh1236I	CGCG	2 cut(s)	289, 1113
Bsh1285I	CGRYCG	1 cut(s)	1249
BshFI	GGCC	3 cut(s)	241, 724, 1187
BshNI	GGYRCC	1 cut(s)	157
BshTI	ACCGGT	1 cut(s)	1244
BsiEI	CGRYCG	1 cut(s)	1249
BsiHKAI	GWGCWC	3 cut(s)	332, 498, 1286
BsiSI	CCGG	5 cut(s)	13, 238, 935, 1198, 1245
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	4 cut(s)	153, 154, 248, 1266
BsmAI	GTCTC	2 cut(s)	616, 947
BsmFI	GGGAC	1 cut(s)	853
BsnI	GGCC	3 cut(s)	241, 724, 1187
Bsp1286I	GDGCHC	4 cut(s)	148, 332, 498, 1286
Bsp143I	GATC	4 cut(s)	284, 355, 457, 605
Bsp68I	TCGCGA	1 cut(s)	289
BspACI	CCGC	2 cut(s)	600, 1181
BspANI	GGCC	3 cut(s)	241, 724, 1187
BspCNI	CTCAG	3 cut(s)	220, 973, 1060
BspFNI	CGCG	2 cut(s)	289, 1113
BspLI	GGNNCC	4 cut(s)	56, 159, 453, 660
BspMI	ACCTGC	1 cut(s)	256
BspOI	GCTAGC	2 cut(s)	654, 879
BspPI	GGATC	2 cut(s)	292, 452
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	105, 468
BsrFI	RCCGGY	4 cut(s)	12, 237, 1197, 1244
BsrI	ACTGG	2 cut(s)	676, 680
BssAI	RCCGGY	4 cut(s)	12, 237, 1197, 1244
BssECI	CCNNGG	1 cut(s)	935
BssMI	GATC	4 cut(s)	284, 355, 457, 605
BssNI	GRCGYC	1 cut(s)	641
Bst2UI	CCWGG	3 cut(s)	656, 667, 1189
Bst4CI	ACNGT	2 cut(s)	189, 846
Bst6I	CTCTTC	1 cut(s)	1011
BstACI	GRCGYC	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	959
BstDEI	CTNAG	5 cut(s)	207, 414, 536, 981, 1068
BstF5I	GGATG	4 cut(s)	113, 205, 899, 1251
BstFNI	CGCG	2 cut(s)	289, 1113
BstHHI	GCGC	3 cut(s)	169, 748, 1115
BstKTI	GATC	4 cut(s)	287, 358, 460, 608
BstMAI	GTCTC	2 cut(s)	616, 947
BstMBI	GATC	4 cut(s)	284, 355, 457, 605
BstMCI	CGRYCG	1 cut(s)	1249
BstMWI	GCNNNNNNNGC	8 cut(s)	143, 166, 271, 749, 872, 986, 1119, 1184
BstNI	CCWGG	3 cut(s)	656, 667, 1189
BstSCI	CCNGG	4 cut(s)	654, 665, 934, 1187
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	2 cut(s)	289, 1113
BstV1I	GCAGC	9 cut(s)	730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	605
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	241, 724, 1187
BtgZI	GCGATG	1 cut(s)	847
BtrI	CACGTC	1 cut(s)	906
BtsCI	GGATG	4 cut(s)	113, 205, 899, 1251
BtsIMutI	CAGTG	2 cut(s)	498, 687
BtuMI	TCGCGA	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	3 cut(s)	169, 748, 1115
Cfr10I	RCCGGY	4 cut(s)	12, 237, 1197, 1244
CseI	GACGC	2 cut(s)	649, 1119
Csp6I	GTAC	2 cut(s)	630, 1231
CspAI	ACCGGT	1 cut(s)	1244
CviAII	CATG	5 cut(s)	92, 499, 545, 566, 969
CviQI	GTAC	2 cut(s)	630, 1231
DdeI	CTNAG	5 cut(s)	207, 414, 536, 981, 1068
DpnI	GATC	4 cut(s)	286, 357, 459, 607
DpnII	GATC	4 cut(s)	284, 355, 457, 605
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	1011
EarI	CTCTTC	1 cut(s)	1011
Eco72I	CACGTG	1 cut(s)	959
EcoRII	CCWGG	3 cut(s)	654, 665, 1187
FaeI	CATG	5 cut(s)	95, 502, 548, 569, 972
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	5 cut(s)	91, 498, 544, 565, 968
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	9 cut(s)	744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
FokI	GGATG	4 cut(s)	100, 212, 886, 1238
Fsp4HI	GCNGC	9 cut(s)	744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
FspBI	CTAG	6 cut(s)	6, 651, 735, 816, 876, 1002
FspI	TGCGCA	1 cut(s)	747
GlaI	GCGC	3 cut(s)	168, 747, 1114
GluI	GCNGC	9 cut(s)	744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
GsuI	CTGGAG	2 cut(s)	649, 663
HaeIII	GGCC	3 cut(s)	241, 724, 1187
HapII	CCGG	5 cut(s)	13, 238, 935, 1198, 1245
HgaI	GACGC	2 cut(s)	649, 1119
HhaI	GCGC	3 cut(s)	169, 748, 1115
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	5 cut(s)	95, 502, 548, 569, 972
Hin6I	GCGC	3 cut(s)	167, 746, 1113
HinP1I	GCGC	3 cut(s)	167, 746, 1113
HindIII	AAGCTT	3 cut(s)	750, 1032, 1124
HinfI	GANTC	5 cut(s)	476, 521, 548, 700, 772
HpaII	CCGG	5 cut(s)	13, 238, 935, 1198, 1245
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	132, 210, 518, 793, 1050
Hpy188III	TCNNGA	5 cut(s)	45, 288, 353, 1163, 1287
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	16, 78, 127, 603
HpyCH4III	ACNGT	2 cut(s)	189, 846
HpyCH4IV	ACGT	2 cut(s)	905, 958
HpyCH4V	TGCA	5 cut(s)	98, 265, 899, 962, 1148
HpyF10VI	GCNNNNNNNGC	8 cut(s)	143, 166, 271, 749, 872, 986, 1119, 1184
HpyF3I	CTNAG	5 cut(s)	207, 414, 536, 981, 1068
HpySE526I	ACGT	2 cut(s)	905, 958
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	5 cut(s)	95, 502, 548, 569, 972
HspAI	GCGC	3 cut(s)	167, 746, 1113
Kzo9I	GATC	4 cut(s)	284, 355, 457, 605
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	9 cut(s)	730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
LweI	GCATC	4 cut(s)	85, 193, 908, 1260
MaeI	CTAG	6 cut(s)	6, 651, 735, 816, 876, 1002
MaeII	ACGT	2 cut(s)	905, 958
MaeIII	GTNAC	3 cut(s)	8, 801, 906
MalI	GATC	4 cut(s)	286, 357, 459, 607
MboI	GATC	4 cut(s)	284, 355, 457, 605
MboII	GAAGA	6 cut(s)	74, 389, 543, 938, 986, 1028
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	4 cut(s)	148, 332, 498, 1286
MluCI	AATT	5 cut(s)	40, 48, 323, 396, 715
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	2 cut(s)	262, 496
MspA1I	CMGCKG	2 cut(s)	1145, 1181
MspI	CCGG	5 cut(s)	13, 238, 935, 1198, 1245
MspR9I	CCNGG	4 cut(s)	656, 667, 936, 1189
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	3 cut(s)	656, 667, 1189
MvnI	CGCG	2 cut(s)	289, 1113
MwoI	GCNNNNNNNGC	8 cut(s)	143, 166, 271, 749, 872, 986, 1119, 1184
NciI	CCSGG	1 cut(s)	936
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	4 cut(s)	284, 355, 457, 605
NheI	GCTAGC	2 cut(s)	650, 875
NlaIII	CATG	5 cut(s)	95, 502, 548, 569, 972
NlaIV	GGNNCC	4 cut(s)	56, 159, 453, 660
NmuCI	GTSAC	2 cut(s)	8, 906
NruI	TCGCGA	1 cut(s)	289
NsbI	TGCGCA	1 cut(s)	747
PfeI	GAWTC	4 cut(s)	476, 548, 700, 772
PfoI	TCCNGGA	1 cut(s)	665
PinAI	ACCGGT	1 cut(s)	1244
PkrI	GCNGC	9 cut(s)	745, 868, 964, 967, 1144, 1147, 1177, 1180, 1207
PleI	GAGTC	1 cut(s)	529
PmaCI	CACGTG	1 cut(s)	959
PmlI	CACGTG	1 cut(s)	959
PpsI	GAGTC	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	959
Psp6I	CCWGG	3 cut(s)	654, 665, 1187
PspCI	CACGTG	1 cut(s)	959
PspGI	CCWGG	3 cut(s)	654, 665, 1187
PspN4I	GGNNCC	4 cut(s)	56, 159, 453, 660
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	1145
RruI	TCGCGA	1 cut(s)	289
RsaI	GTAC	2 cut(s)	631, 1232
RsaNI	GTAC	2 cut(s)	630, 1231
SatI	GCNGC	9 cut(s)	744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
Sau3AI	GATC	4 cut(s)	284, 355, 457, 605
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	4 cut(s)	656, 667, 936, 1189
SduI	GDGCHC	4 cut(s)	148, 332, 498, 1286
SfaNI	GCATC	4 cut(s)	85, 193, 908, 1260
SfcI	CTRYAG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	1161
SmoI	CTYRAG	1 cut(s)	1161
Sse9I	AATT	5 cut(s)	40, 48, 323, 396, 715
SsiI	CCGC	2 cut(s)	600, 1181
SspMI	CTAG	6 cut(s)	6, 651, 735, 816, 876, 1002
StyD4I	CCNGG	4 cut(s)	654, 665, 934, 1187
TaaI	ACNGT	2 cut(s)	189, 846
TaiI	ACGT	2 cut(s)	908, 961
TaqI	TCGA	1 cut(s)	1083
TasI	AATT	5 cut(s)	40, 48, 323, 396, 715
TatI	WGTACW	1 cut(s)	1230
TfiI	GAWTC	4 cut(s)	476, 548, 700, 772
TscAI	CASTG	2 cut(s)	498, 687
TseFI	GTSAC	2 cut(s)	8, 906
TseI	GCWGC	9 cut(s)	743, 866, 962, 965, 1142, 1145, 1175, 1178, 1205
Tsp45I	GTSAC	2 cut(s)	8, 906
TspDTI	ATGAA	8 cut(s)	60, 468, 554, 744, 824, 872, 1037, 1145
TspRI	CASTG	2 cut(s)	498, 687
XspI	CTAG	6 cut(s)	6, 651, 735, 816, 876, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.