Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004396

Physical Location & Seq

Genomic Coordinates Forward (+)

53865848 .. 53867641

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCATCACCAAGAAGATGAAGACGACTCGGTTTTTCTCACTCTCGGCCCTCCCGGACAGCCAGCTCACCGCCACATCCAACAATCATCCTCCTCCTCATCTACCCAGCCTCACCATCAAAACCCTAATTATAGCACAAACCATGAGGATGGTGTCACAGTAGCCCTTCACATTGGGCAGCCCTTTACCACTTCTGGACCTTCAAGCAACAACAACAACAACAACAACAATGTTCGCATTGGTGCTCCTATGGAAGGCCAGTACTGGATCCCTTCTCCAGCGCAAATCCTCGTCGGCCCAACTCAGTTCTCCTGCCCCGTCTGCGGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGCTCGCAGTACCGGAAGGGACCAGAATCGTTGAGGGGAACGAAGCCATCTTCATCCATACTCCGTCTTCCATGTTACTGCTGCGCCGAGGGCTGCAGGAATAACATAGACCACCCGAGGTCAAGGCCGCTGAAAGACTTCAGAACTCTGCAGACACATTACAAGAGGAAGCACGGGACGAAGCCGTTCGGTTGCCGCAAATGCGGCAAGCCGTTTGCGGTGAGAGGAGACTGGAGAACGCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGCATCTGCGGCTCGGATTTCAAGCACAAAAGGTCCCTCAAGGACCACGTGAGGAGTTTCGGTGATGGCCACGCGCAGTACGCTGTGGAGCTGTGCGCTGAAGCTGAGGAGGATGAAGAAGAAGATCTAGAGGATGAGGATGATAATGACGAAAGCAGGGACACTAATGGAGGAGGTCAGCATCATGGAGTTGGGTCTGTTTATTTTAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

286

Amino Acids

32.22

Weight (kDa)

6.67

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	150 - 184	1.3e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	187 - 211	3.2e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170
fragaria_vesca	FvH4_4g36350 FvH4_4g36350 FvH4_4g36350
malus_domestica	MD13G1009800.v1.1 MD16G1008100.v1.1
prunus_persica	Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1
pyrus_communis	pycom13g00830 pycom16g00790
rosa_chinensis	RchiOBHm_Chr4g0446081
rosa_laevigata	RLG00000005693
rosa_multiflora	Rmu_sc0007511.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386490
rosa_rugosa	Rorug04G0367200 Rorug04G0367300 Rorug04G0367400 Rorug04G0367500 Rorug04G0367600 Rorug04G0367700 Rorug04G0367800
rosa_samantha	Rh4AG429300 Rh4BG438800 Rh4CG456100 Rh4DG437000
rosa_wichuraiana	Rw4G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	719
AciI	CCGC	8 cut(s)	70, 324, 503, 571, 579, 593, 630, 654
AclWI	GGATC	2 cut(s)	262, 275
AcoI	YGGCCR	1 cut(s)	712
AcuI	CTGAAG	2 cut(s)	499, 765
AcvI	CACGTG	1 cut(s)	694
AfaI	GTAC	3 cut(s)	263, 386, 725
AfiI	CCNNNNNNNGG	2 cut(s)	254, 323
AgsI	TTSAA	3 cut(s)	204, 337, 667
AluBI	AGCT	4 cut(s)	65, 637, 736, 749
AluI	AGCT	4 cut(s)	65, 637, 736, 749
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	2 cut(s)	262, 275
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	5 cut(s)	46, 256, 295, 500, 712
ApeKI	GCWGC	3 cut(s)	178, 456, 468
Asp700I	GAANNNNTTC	2 cut(s)	512, 560
AspLEI	GCGC	4 cut(s)	283, 461, 721, 743
AspS9I	GGNCC	6 cut(s)	47, 197, 296, 395, 678, 688
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	4 cut(s)	59, 104, 607, 719
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	4 cut(s)	197, 395, 678, 688
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	617
BbrPI	CACGTG	1 cut(s)	694
BbsI	GAAGAC	2 cut(s)	27, 434
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	190, 443, 455
BccI	CCATC	4 cut(s)	123, 143, 430, 704
BceAI	ACGGC	3 cut(s)	391, 544, 571
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	1 cut(s)	773
BfmI	CTRYAG	2 cut(s)	469, 524
BglII	AGATCT	1 cut(s)	769
BisI	GCNGC	9 cut(s)	179, 325, 457, 469, 503, 571, 580, 631, 655
BlsI	GCNGC	9 cut(s)	180, 326, 458, 470, 504, 572, 581, 632, 656
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	4 cut(s)	197, 395, 678, 688
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	6 cut(s)	47, 197, 296, 395, 678, 688
BmiI	GGNNCC	3 cut(s)	269, 396, 680
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	13, 348, 657, 835
BpiI	GAAGAC	2 cut(s)	27, 434
BpmI	CTGGAG	2 cut(s)	261, 628
Bpu10I	CCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	694
BsaJI	CCNNGG	2 cut(s)	462, 491
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 323
Bse1I	ACTGG	3 cut(s)	259, 269, 611
BseDI	CCNNGG	2 cut(s)	462, 491
BseGI	GGATG	7 cut(s)	75, 86, 154, 428, 763, 784, 790
BseLI	CCNNNNNNNGG	2 cut(s)	254, 323
BseMII	CTCAG	2 cut(s)	317, 741
BseNI	ACTGG	3 cut(s)	259, 269, 611
BseRI	GAGGAG	6 cut(s)	82, 85, 615, 712, 767, 831
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	190, 443, 455
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	5 cut(s)	48, 258, 297, 502, 714
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	54, 388
BslFI	GGGAC	4 cut(s)	408, 565, 664, 818
BslI	CCNNNNNNNGG	2 cut(s)	254, 323
BsmAI	GTCTC	1 cut(s)	597
BsmFI	GGGAC	4 cut(s)	408, 565, 664, 818
BsnI	GGCC	5 cut(s)	48, 258, 297, 502, 714
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	247, 375
Bsp143I	GATC	2 cut(s)	267, 769
BspACI	CCGC	8 cut(s)	70, 324, 503, 571, 579, 593, 630, 654
BspANI	GGCC	5 cut(s)	48, 258, 297, 502, 714
BspCNI	CTCAG	2 cut(s)	316, 742
BspFNI	CGCG	1 cut(s)	719
BspLI	GGNNCC	3 cut(s)	269, 396, 680
BspMAI	CTGCAG	2 cut(s)	473, 528
BspPI	GGATC	2 cut(s)	262, 275
BsrI	ACTGG	3 cut(s)	259, 269, 611
BssECI	CCNNGG	2 cut(s)	462, 491
BssMI	GATC	2 cut(s)	267, 769
BssSI	CACGAG	1 cut(s)	617
Bst2BI	CACGAG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	694
BstC8I	GCNNGC	4 cut(s)	63, 380, 584, 635
BstDEI	CTNAG	2 cut(s)	303, 750
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	7 cut(s)	75, 86, 154, 428, 763, 784, 790
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	4 cut(s)	283, 461, 721, 743
BstKTI	GATC	2 cut(s)	270, 772
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	2 cut(s)	267, 769
BstMWI	GCNNNNNNNGC	7 cut(s)	321, 379, 465, 576, 579, 654, 725
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	469, 524
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	3 cut(s)	190, 443, 455
BstV2I	GAAGAC	2 cut(s)	27, 434
BstX2I	RGATCY	2 cut(s)	267, 769
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	2 cut(s)	267, 769
BsuRI	GGCC	5 cut(s)	48, 258, 297, 502, 714
BtsCI	GGATG	7 cut(s)	75, 86, 154, 428, 763, 784, 790
Cac8I	GCNNGC	4 cut(s)	63, 380, 584, 635
CfoI	GCGC	4 cut(s)	283, 461, 721, 743
Cfr13I	GGNCC	6 cut(s)	47, 197, 296, 395, 678, 688
Csp6I	GTAC	3 cut(s)	262, 385, 724
CviAII	CATG	4 cut(s)	143, 352, 447, 830
CviQI	GTAC	3 cut(s)	262, 385, 724
DdeI	CTNAG	2 cut(s)	303, 750
DpnI	GATC	2 cut(s)	269, 771
DpnII	GATC	2 cut(s)	267, 769
EaeI	YGGCCR	1 cut(s)	712
Eco47I	GGWCC	4 cut(s)	197, 395, 678, 688
Eco57I	CTGAAG	2 cut(s)	499, 765
Eco72I	CACGTG	1 cut(s)	694
Eco88I	CYCGRG	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	678
EcoT22I	ATGCAT	2 cut(s)	6, 363
FaeI	CATG	4 cut(s)	146, 355, 450, 833
FaqI	GGGAC	4 cut(s)	408, 565, 664, 818
FatI	CATG	4 cut(s)	142, 351, 446, 829
FauNDI	CATATG	1 cut(s)	363
Fnu4HI	GCNGC	9 cut(s)	179, 325, 457, 469, 503, 571, 580, 631, 655
FokI	GGATG	7 cut(s)	62, 73, 161, 415, 770, 791, 797
Fsp4HI	GCNGC	9 cut(s)	179, 325, 457, 469, 503, 571, 580, 631, 655
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	4 cut(s)	282, 460, 720, 742
GluI	GCNGC	9 cut(s)	179, 325, 457, 469, 503, 571, 580, 631, 655
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	2 cut(s)	261, 628
HaeIII	GGCC	5 cut(s)	48, 258, 297, 502, 714
HapII	CCGG	2 cut(s)	54, 388
HhaI	GCGC	4 cut(s)	283, 461, 721, 743
Hin1II	CATG	4 cut(s)	146, 355, 450, 833
Hin6I	GCGC	4 cut(s)	281, 459, 719, 741
HinP1I	GCGC	4 cut(s)	281, 459, 719, 741
HinfI	GANTC	2 cut(s)	26, 401
HpaII	CCGG	2 cut(s)	54, 388
HphI	GGTGA	4 cut(s)	59, 104, 607, 719
Hpy188I	TCNGA	2 cut(s)	518, 661
Hpy188III	TCNNGA	2 cut(s)	195, 773
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	6 cut(s)	176, 210, 248, 282, 343, 385
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	6 cut(s)	4, 355, 361, 471, 526, 648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	321, 379, 465, 576, 579, 654, 725
HpyF3I	CTNAG	2 cut(s)	303, 750
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	4 cut(s)	146, 355, 450, 833
HspAI	GCGC	4 cut(s)	281, 459, 719, 741
Kzo9I	GATC	2 cut(s)	267, 769
LmnI	GCTCC	2 cut(s)	250, 733
Lsp1109I	GCAGC	3 cut(s)	190, 443, 455
LweI	GCATC	4 cut(s)	13, 348, 657, 835
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	154, 449
MalI	GATC	2 cut(s)	269, 771
MboI	GATC	2 cut(s)	267, 769
MboII	GAAGA	8 cut(s)	26, 32, 417, 434, 634, 773, 776, 779
MflI	RGATCY	2 cut(s)	267, 769
MhlI	GDGCHC	2 cut(s)	247, 375
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	714
Mph1103I	ATGCAT	2 cut(s)	6, 363
MroXI	GAANNNNTTC	2 cut(s)	512, 560
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	2 cut(s)	852, 859
MslI	CAYNNNNRTG	2 cut(s)	147, 356
Msp20I	TGGCCA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	2 cut(s)	54, 388
MspR9I	CCNGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	7 cut(s)	321, 379, 465, 576, 579, 654, 725
NciI	CCSGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	2 cut(s)	267, 769
NlaIII	CATG	4 cut(s)	146, 355, 450, 833
NlaIV	GGNNCC	3 cut(s)	269, 396, 680
NmeAIII	GCCGAG	2 cut(s)	24, 487
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	2 cut(s)	6, 363
NspI	RCATGY	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	512, 560
PfeI	GAWTC	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	9 cut(s)	180, 326, 458, 470, 504, 572, 581, 632, 656
PleI	GAGTC	1 cut(s)	20
PmaCI	CACGTG	1 cut(s)	694
PmlI	CACGTG	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	678
PspCI	CACGTG	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	269, 396, 680
PspPI	GGNCC	6 cut(s)	47, 197, 296, 395, 678, 688
PspPPI	RGGWCCY	1 cut(s)	678
PstI	CTGCAG	2 cut(s)	473, 528
PsuI	RGATCY	2 cut(s)	267, 769
RsaI	GTAC	3 cut(s)	263, 386, 725
RsaNI	GTAC	3 cut(s)	262, 385, 724
RseI	CAYNNNNRTG	2 cut(s)	147, 356
SaqAI	TTAA	2 cut(s)	852, 859
SatI	GCNGC	9 cut(s)	179, 325, 457, 469, 503, 571, 580, 631, 655
Sau3AI	GATC	2 cut(s)	267, 769
Sau96I	GGNCC	6 cut(s)	47, 197, 296, 395, 678, 688
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	247, 375
SfaNI	GCATC	4 cut(s)	13, 348, 657, 835
SfcI	CTRYAG	2 cut(s)	469, 524
SinI	GGWCC	4 cut(s)	197, 395, 678, 688
SmiMI	CAYNNNNRTG	2 cut(s)	147, 356
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	8 cut(s)	70, 324, 503, 571, 579, 593, 630, 654
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	696
TasI	AATT	1 cut(s)	127
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	6 cut(s)	327, 505, 573, 582, 633, 657
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	852, 859
Tru9I	TTAA	2 cut(s)	852, 859
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	178, 456, 468
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	33, 417, 774
TspGWI	ACGGA	1 cut(s)	428
VpaK11BI	GGWCC	4 cut(s)	197, 395, 678, 688
XagI	CCTNNNNNAGG	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	512, 560
XspI	CTAG	1 cut(s)	773
ZrmI	AGTACT	1 cut(s)	263
Zsp2I	ATGCAT	2 cut(s)	6, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.