Rw4G036680

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004396
Physical Location & Seq
Reverse (-)
63504952 .. 63508304
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036680.1

Sequence Viewer

Length: 798 bp
ATGATCGAAAATTCTGTTGGAGAGTCAGCAATCAATCTTAGCCGGCTTGATTCTTCTGGAGCTTTCCATGGCACAACAACATTTATTCCTCCCCCTTCAACGGCAAGGTCTGTGTCAATGAGAGATATGGGTACAGAGATGACACCAATTGCTAGCCAGGAACCTTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCAATTCGTAGTCCAACTAATTCAAGGCCATCTACTCCTACCAGAGCCGCACAAGCTTCATCTCTGATTGCTCCATCTATTGACCACATAGATCCTAACAAGGAGTTGTCTGAGAAGGAGAAAACCAGGAGAGAGATAATGGCTCTTGGGACACAGCTGGGTAAGATGAATATTGCTGCCTGGGCTAGCAAAGAAGAGGATAAAGATGCATCAACATCAGTGAAATCTGCACCAGCAGAACAACTAGCTAACAGTGTTATTGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATTTGGCTAGGTTCAAACGTGAAGAGATGAAAATTCAAGCGTGGGAAAATCATCAGAAAGCAAAAACAGAAGCAGAGATGAGGAAAGTTGAGGTAGAGATTGAAAGGATAAGGGGACGGGCACACAGTAAGCTAATGAATAAGTTAGCAGCTGCAAGGCATAAGGCACAAGAAAAGCGAGCAGCAGCTGAGGCCAAGAGAAACCAGCAAGCTGCAAAAACGGAGCAACAAGCAGAGTACATTCGCAGAACTGGCCGAATCCCTTCCACATTTTCTTGTTGGGGTTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

265

Amino Acids

29.26

Weight (kDa)

9.6

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 153 - 256 7.6e-35 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 2 cut(s) 10, 534
AcvI CACGTG 1 cut(s) 467
AfaI GTAC 2 cut(s) 133, 740
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 464
AgsI TTSAA 5 cut(s) 99, 222, 517, 539, 605
AjnI CCWGG 4 cut(s) 156, 167, 323, 377
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 8 cut(s) 62, 254, 355, 446, 634, 653, 689, 713
AluI AGCT 8 cut(s) 62, 254, 355, 446, 634, 653, 689, 713
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 3 cut(s) 224, 693, 754
ApeKI GCWGC 8 cut(s) 374, 470, 473, 650, 653, 683, 686, 713
ApoI RAATTY 2 cut(s) 10, 534
Asp700I GAANNNNTTC 1 cut(s) 763
AsuNHI GCTAGC 2 cut(s) 152, 383
BaeGI GKGCMC 1 cut(s) 625
BbrPI CACGTG 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 794
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 8 cut(s) 361, 482, 485, 640, 662, 695, 698, 700
BccI CCATC 2 cut(s) 235, 280
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 4 cut(s) 158, 169, 325, 379
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 4 cut(s) 153, 384, 443, 510
BisI GCNGC 9 cut(s) 246, 375, 471, 474, 651, 654, 684, 687, 714
BlsI GCNGC 9 cut(s) 247, 376, 472, 475, 652, 655, 685, 688, 715
Bme1390I CCNGG 4 cut(s) 158, 169, 325, 379
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 4 cut(s) 158, 169, 325, 379
BmsI GCATC 2 cut(s) 394, 416
BmtI GCTAGC 2 cut(s) 156, 387
BpmI CTGGAG 2 cut(s) 78, 165
Bpu10I CCTNAGC 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 67, 378
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 178, 182, 757
BseBI CCWGG 4 cut(s) 158, 169, 325, 379
BseDI CCNNGG 2 cut(s) 67, 378
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 300, 480, 681
BseNI ACTGG 3 cut(s) 178, 182, 757
BseRI GAGGAG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 8 cut(s) 361, 482, 485, 640, 662, 695, 698, 700
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 2 cut(s) 411, 489
BshFI GGCC 3 cut(s) 226, 695, 756
BsiHKAI GWGCWC 1 cut(s) 794
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 361, 630
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 361, 630
BsnI GGCC 3 cut(s) 226, 695, 756
Bsp1286I GDGCHC 2 cut(s) 625, 794
Bsp143I GATC 2 cut(s) 3, 289
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 246
BspANI GGCC 3 cut(s) 226, 695, 756
BspCNI CTCAG 3 cut(s) 301, 481, 682
BspLI GGNNCC 1 cut(s) 162
BspOI GCTAGC 2 cut(s) 156, 387
BspPI GGATC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 178, 182, 757
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 67, 378
BssMI GATC 2 cut(s) 3, 289
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 4 cut(s) 158, 169, 325, 379
Bst4CI ACNGT 2 cut(s) 452, 629
Bst6I CTCTTC 2 cut(s) 387, 519
BstBAI YACGTR 1 cut(s) 467
BstC8I GCNNGC 5 cut(s) 44, 154, 385, 681, 711
BstDEI CTNAG 4 cut(s) 38, 309, 489, 690
BstDSI CCRYGG 1 cut(s) 67
BstKTI GATC 2 cut(s) 6, 292
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 3, 289
BstMWI GCNNNNNNNGC 5 cut(s) 251, 380, 494, 692, 753
BstNI CCWGG 4 cut(s) 158, 169, 325, 379
BstSCI CCNGG 4 cut(s) 156, 167, 323, 377
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 8 cut(s) 361, 482, 485, 640, 662, 695, 698, 700
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 3 cut(s) 226, 695, 756
BtgI CCRYGG 1 cut(s) 67
BtsIMutI CAGTG 3 cut(s) 189, 423, 457
Cac8I GCNNGC 5 cut(s) 44, 154, 385, 681, 711
CaiI CAGNNNCTG 1 cut(s) 689
Cfr10I RCCGGY 1 cut(s) 42
Csp6I GTAC 2 cut(s) 132, 739
CviAII CATG 2 cut(s) 68, 477
CviQI GTAC 2 cut(s) 132, 739
DdeI CTNAG 4 cut(s) 38, 309, 489, 690
DpnI GATC 2 cut(s) 5, 291
DpnII GATC 2 cut(s) 3, 289
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 2 cut(s) 387, 519
EarI CTCTTC 2 cut(s) 387, 519
Eco130I CCWWGG 1 cut(s) 67
Eco72I CACGTG 1 cut(s) 467
EcoRII CCWGG 4 cut(s) 156, 167, 323, 377
EcoT14I CCWWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 71, 480
FaiI YATR 5 cut(s) 69, 128, 287, 478, 663
FaqI GGGAC 2 cut(s) 361, 630
FatI CATG 2 cut(s) 67, 476
Fnu4HI GCNGC 9 cut(s) 246, 375, 471, 474, 651, 654, 684, 687, 714
Fsp4HI GCNGC 9 cut(s) 246, 375, 471, 474, 651, 654, 684, 687, 714
FspBI CTAG 4 cut(s) 153, 384, 443, 510
GluI GCNGC 9 cut(s) 246, 375, 471, 474, 651, 654, 684, 687, 714
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 2 cut(s) 78, 165
HaeIII GGCC 3 cut(s) 226, 695, 756
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 71, 480
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 3 cut(s) 23, 50, 759
HpaII CCGG 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 264, 310, 558
Hpy188III TCNNGA 2 cut(s) 57, 795
HpyAV CCTTC 4 cut(s) 105, 174, 307, 774
HpyCH4III ACNGT 2 cut(s) 452, 629
HpyCH4IV ACGT 2 cut(s) 466, 520
HpyCH4V TGCA 5 cut(s) 407, 428, 470, 656, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 380, 494, 692, 753
HpyF3I CTNAG 4 cut(s) 38, 309, 489, 690
HpySE526I ACGT 2 cut(s) 466, 520
Hsp92II CATG 2 cut(s) 71, 480
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 3, 289
LmnI GCTCC 3 cut(s) 59, 274, 724
Lsp1109I GCAGC 8 cut(s) 361, 482, 485, 640, 662, 695, 698, 700
LweI GCATC 2 cut(s) 394, 416
MaeI CTAG 4 cut(s) 153, 384, 443, 510
MaeII ACGT 2 cut(s) 466, 520
MalI GATC 2 cut(s) 5, 291
MboI GATC 2 cut(s) 3, 289
MboII GAAGA 3 cut(s) 45, 404, 536
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 625, 794
MluCI AATT 5 cut(s) 10, 147, 201, 217, 534
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 7 cut(s) 99, 388, 475, 478, 576, 586, 685
Mph1103I ATGCAT 1 cut(s) 409
MroNI GCCGGC 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 763
MspA1I CMGCKG 3 cut(s) 355, 653, 689
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 4 cut(s) 158, 169, 325, 379
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 4 cut(s) 158, 169, 325, 379
MwoI GCNNNNNNNGC 5 cut(s) 251, 380, 494, 692, 753
NaeI GCCGGC 1 cut(s) 44
NcoI CCATGG 1 cut(s) 67
NdeII GATC 2 cut(s) 3, 289
NgoMIV GCCGGC 1 cut(s) 42
NheI GCTAGC 2 cut(s) 152, 383
NlaIII CATG 2 cut(s) 71, 480
NlaIV GGNNCC 1 cut(s) 162
NsiI ATGCAT 1 cut(s) 409
PdiI GCCGGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 2 cut(s) 50, 759
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 9 cut(s) 247, 376, 472, 475, 652, 655, 685, 688, 715
PleI GAGTC 1 cut(s) 31
PmaCI CACGTG 1 cut(s) 467
PmlI CACGTG 1 cut(s) 467
PpsI GAGTC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 467
Psp6I CCWGG 4 cut(s) 156, 167, 323, 377
PspCI CACGTG 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 4 cut(s) 156, 167, 323, 377
PspN4I GGNNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 3 cut(s) 355, 653, 689
RsaI GTAC 2 cut(s) 133, 740
RsaNI GTAC 2 cut(s) 132, 739
SatI GCNGC 9 cut(s) 246, 375, 471, 474, 651, 654, 684, 687, 714
Sau3AI GATC 2 cut(s) 3, 289
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 4 cut(s) 158, 169, 325, 379
SduI GDGCHC 2 cut(s) 625, 794
SfaNI GCATC 2 cut(s) 394, 416
Sse9I AATT 5 cut(s) 10, 147, 201, 217, 534
SsiI CCGC 1 cut(s) 246
SspI AATATT 1 cut(s) 370
SspMI CTAG 4 cut(s) 153, 384, 443, 510
StyD4I CCNGG 4 cut(s) 156, 167, 323, 377
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 452, 629
TaiI ACGT 2 cut(s) 469, 523
TaqI TCGA 1 cut(s) 6
TasI AATT 5 cut(s) 10, 147, 201, 217, 534
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 50, 759
TscAI CASTG 3 cut(s) 189, 423, 457
TseI GCWGC 8 cut(s) 374, 470, 473, 650, 653, 683, 686, 713
TspDTI ATGAA 4 cut(s) 246, 380, 545, 653
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 3 cut(s) 189, 423, 457
XapI RAATTY 2 cut(s) 10, 534
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 4 cut(s) 153, 384, 443, 510
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.