FvH4_4g36350

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004396
Physical Location & Seq
Reverse (-)
33306839 .. 33326374
19536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36350.t1

Sequence Viewer

Length: 1554 bp
ATGCTATCACCTACCAAGTCTATGGATTACGAAAGGATCCAAAAGCCTCAGGTTGGTGGTGGTGGGGGATTTTCACCTGGGAAGTTGAGGACTATGCTACTTGGGGTAGAGAAGAAGAGGAAGGAGCAGGGAGATTCTGAATCTACTTTCAATTTGAGATCTCAAGCTTCTGAATTTGAAGGGAATGGTGGTGCTGATAACTGCAAAGACGTAGATGTTGTGAGTGTTCATCCTGAATGCTCGACTTCAACTGCTGTTGATTCATCAGGCTCAGAGATGATGAGTGACCGCAGCTTGAAGGATAATGCATTAGGCAATTTCAGAGCTAGGAATCAAGAACACCCGTCGTTGGATTATGATAGTGGACATGATGCAATGAGTACTGTGTCCTCTTCCATCTTTGAGTTTCAGAAGGCAGAAAGGGGCACACAAAGACTGCCTCTTGCACCTTTCTCCAAACCAGCACCATCCAAATGGGATGATGCTCAGAAGTGGATAGCAAGTCCAACTTGGAGCAGGCCAAAGAGTGGGCAAGGAGTTGGATCACGAAAGGCGGGTAATCTAGGTTATGGAAGTCGCCAACCGACGACAAAGGTTGTTGTTGAAGTTCCAGATTCAAAAGTAGCTAACTTTGAAGAGCCAGATACCAAACGGATTGACACAAATCAAACTAAGATGGAAACTGGGGGGCAGAAGTTTGTTAACTGGGAGGCTGAGCCCTACCCCATTGCCGATTCTTACATCAAGCCTGTGCTCATGATCGAAAATTCTGTTGGAGAGTCAGCAATCAATCTTAGCCGGCTGGATTCTTCTGGAGCCTTCCATGGGACGACGACATTTATTCCTCCCCCTTCAACAGCAAGGTCTGTGTCCATGAGAGATATGGGTACAGAGATGACACCAATTGCTAGCCAGGAACCTTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCAATTCGTAGTCCAACTAATTCAAGGCCGTCTACTCCCTCCAGAGCTGCACAAGCTTCATCTCCCAATGCTCCATCTATTGATCACATAGGTCCTAACAAGGAGCTGTCTGAGAAAGAGAAAACTAGGCGAGAGATAATGGCTCTTGGGACACAGCTGGGTAAGACGAATATTGCTGCCTGGGCTAGCAAAGAAGAGGATAAAGATGCATCAACATCAGTAAAATCTGCAGCATCAGAACAACTAGCTAGGAGTATTATTGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATTTGGCTAGGTTTAAACGTGAAGAGATGAAAATTCAAGCGTGGGAGAATCATCAGAAAGCGAAATCAGAAGCAGAGATGCGGAAAGTCGAGGTAGAAATCGAAAGGTTAAGGGGACGGGCACACAGTAAGCTAATGAATAAAATAGCAGCTGCAAGGCATAAGGCTCAAGAAAAGCGAGCAGCAGCGGAGGCCAAGAAAAACCAGCAAGCTGCAAAAACGGAGCAACAAGCAGAGCACATTCGCAGAACTGGCCAGGTCCCTTCCACATTTTGTTGTTGGGGTTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

518

Amino Acids

56.62

Weight (kDa)

9.09

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 406 - 508 2.1e-33 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 986
AciI CCGC 4 cut(s) 289, 554, 1339, 1445
AclWI GGATC 3 cut(s) 31, 44, 550
AcoI YGGCCR 1 cut(s) 1510
AcsI RAATTY 3 cut(s) 173, 766, 1290
AcvI CACGTG 1 cut(s) 1223
AfaI GTAC 2 cut(s) 382, 889
AfiI CCNNNNNNNGG 4 cut(s) 53, 349, 527, 825
AflIII ACRYGT 1 cut(s) 1220
AjnI CCWGG 5 cut(s) 76, 912, 923, 1133, 1512
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
Alw21I GWGCWC 3 cut(s) 756, 1497, 1550
Alw26I GTCTC 1 cut(s) 1211
AlwI GGATC 3 cut(s) 31, 44, 550
AoxI GGCC 4 cut(s) 518, 980, 1449, 1510
ApoI RAATTY 3 cut(s) 173, 766, 1290
AspS9I GGNCC 2 cut(s) 1046, 1516
AsuHPI GGTGA 1 cut(s) 66
AsuNHI GCTAGC 2 cut(s) 908, 1139
AvaII GGWCC 2 cut(s) 1046, 1516
AxyI CCTNAGG 1 cut(s) 48
BaeGI GKGCMC 2 cut(s) 428, 1381
BalI TGGCCA 1 cut(s) 1512
BamHI GGATCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 720
BbrPI CACGTG 1 cut(s) 1223
Bbv12I GWGCWC 3 cut(s) 756, 1497, 1550
BccI CCATC 4 cut(s) 404, 475, 670, 1036
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 5 cut(s) 78, 914, 925, 1135, 1514
BclI TGATCA 1 cut(s) 1036
BcoDI GTCTC 1 cut(s) 1211
BfaI CTAG 8 cut(s) 327, 563, 909, 1080, 1140, 1199, 1203, 1266
BfmI CTRYAG 1 cut(s) 1182
BglII AGATCT 1 cut(s) 158
BlpI GCTNAGC 1 cut(s) 714
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 5 cut(s) 78, 914, 925, 1135, 1514
Bme18I GGWCC 2 cut(s) 1046, 1516
BmgT120I GGNCC 2 cut(s) 1046, 1516
BmiI GGNNCC 4 cut(s) 38, 817, 918, 1518
BmrFI CCNGG 5 cut(s) 78, 914, 925, 1135, 1514
BmrI ACTGGG 2 cut(s) 693, 715
BmsI GCATC 6 cut(s) 361, 472, 1150, 1172, 1196, 1326
BmtI GCTAGC 2 cut(s) 912, 1143
BmuI ACTGGG 2 cut(s) 693, 715
BpmI CTGGAG 3 cut(s) 834, 921, 979
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 147, 1410
BsaAI YACGTR 1 cut(s) 1223
BsaJI CCNNGG 3 cut(s) 77, 823, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 349, 527, 825
Bse118I RCCGGY 1 cut(s) 798
Bse1I ACTGG 5 cut(s) 688, 710, 934, 938, 1513
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 381, 726
BseBI CCWGG 5 cut(s) 78, 914, 925, 1135, 1514
BseDI CCNNGG 3 cut(s) 77, 823, 1134
BseGI GGATG 3 cut(s) 229, 467, 484
BseLI CCNNNNNNNGG 4 cut(s) 53, 349, 527, 825
BseMI GCAATG 2 cut(s) 381, 726
BseMII CTCAG 6 cut(s) 62, 285, 500, 705, 1056, 1236
BseNI ACTGG 5 cut(s) 688, 710, 934, 938, 1513
BseRI GAGGAG 1 cut(s) 1253
BseSI GKGCMC 2 cut(s) 428, 1381
BseYI CCCAGC 1 cut(s) 1111
BsgI GTGCAG 2 cut(s) 987, 1245
BshFI GGCC 4 cut(s) 520, 982, 1451, 1512
BsiHKAI GWGCWC 3 cut(s) 756, 1497, 1550
BsiSI CCGG 1 cut(s) 799
BslFI GGGAC 4 cut(s) 841, 1117, 1386, 1502
BslI CCNNNNNNNGG 4 cut(s) 53, 349, 527, 825
BsmAI GTCTC 1 cut(s) 1211
BsmFI GGGAC 4 cut(s) 841, 1117, 1386, 1502
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 4 cut(s) 520, 982, 1451, 1512
Bsp1286I GDGCHC 6 cut(s) 428, 720, 756, 1381, 1497, 1550
Bsp143I GATC 5 cut(s) 36, 158, 542, 759, 1036
Bsp1720I GCTNAGC 1 cut(s) 714
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 4 cut(s) 289, 554, 1339, 1445
BspANI GGCC 4 cut(s) 520, 982, 1451, 1512
BspCNI CTCAG 6 cut(s) 61, 284, 499, 706, 1057, 1237
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 4 cut(s) 38, 817, 918, 1518
BspMAI CTGCAG 1 cut(s) 1186
BspOI GCTAGC 2 cut(s) 912, 1143
BspPI GGATC 3 cut(s) 31, 44, 550
BspQI GCTCTTC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 381, 726
BsrFI RCCGGY 1 cut(s) 798
BsrI ACTGG 5 cut(s) 688, 710, 934, 938, 1513
BssAI RCCGGY 1 cut(s) 798
BssECI CCNNGG 3 cut(s) 77, 823, 1134
BssMI GATC 5 cut(s) 36, 158, 542, 759, 1036
BssT1I CCWWGG 1 cut(s) 823
Bst2UI CCWGG 5 cut(s) 78, 914, 925, 1135, 1514
Bst4CI ACNGT 2 cut(s) 385, 1385
Bst6I CTCTTC 5 cut(s) 110, 397, 630, 1143, 1275
BstBAI YACGTR 1 cut(s) 1223
BstC8I GCNNGC 6 cut(s) 518, 800, 910, 1141, 1437, 1467
BstDEI CTNAG 8 cut(s) 48, 271, 486, 672, 714, 794, 1065, 1245
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 3 cut(s) 229, 467, 484
BstKTI GATC 5 cut(s) 39, 161, 545, 762, 1039
BstMAI GTCTC 1 cut(s) 1211
BstMBI GATC 5 cut(s) 36, 158, 542, 759, 1036
BstMWI GCNNNNNNNGC 5 cut(s) 1007, 1136, 1250, 1448, 1509
BstNI CCWGG 5 cut(s) 78, 914, 925, 1135, 1514
BstSCI CCNGG 5 cut(s) 76, 912, 923, 1133, 1512
BstSFI CTRYAG 1 cut(s) 1182
BstSLI GKGCMC 2 cut(s) 428, 1381
BstX2I RGATCY 2 cut(s) 36, 158
BstXI CCANNNNNNTGG 3 cut(s) 22, 474, 1261
BstYI RGATCY 2 cut(s) 36, 158
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 4 cut(s) 520, 982, 1451, 1512
BtgI CCRYGG 1 cut(s) 823
BtsCI GGATG 3 cut(s) 229, 467, 484
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 6 cut(s) 518, 800, 910, 1141, 1437, 1467
CciI TCATGA 1 cut(s) 756
Cfr10I RCCGGY 1 cut(s) 798
Cfr13I GGNCC 2 cut(s) 1046, 1516
Csp6I GTAC 2 cut(s) 381, 888
CviAII CATG 5 cut(s) 368, 757, 824, 874, 1233
CviQI GTAC 2 cut(s) 381, 888
DdeI CTNAG 8 cut(s) 48, 271, 486, 672, 714, 794, 1065, 1245
DpnI GATC 5 cut(s) 38, 160, 544, 761, 1038
DpnII GATC 5 cut(s) 36, 158, 542, 759, 1036
DraI TTTAAA 1 cut(s) 1273
EaeI YGGCCR 1 cut(s) 1510
Eam1104I CTCTTC 5 cut(s) 110, 397, 630, 1143, 1275
EarI CTCTTC 5 cut(s) 110, 397, 630, 1143, 1275
Eco130I CCWWGG 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 720
Eco47I GGWCC 2 cut(s) 1046, 1516
Eco72I CACGTG 1 cut(s) 1223
Eco81I CCTNAGG 1 cut(s) 48
EcoO109I RGGNCCY 2 cut(s) 1046, 1516
EcoRII CCWGG 5 cut(s) 76, 912, 923, 1133, 1512
EcoT14I CCWWGG 1 cut(s) 823
EcoT22I ATGCAT 2 cut(s) 310, 1165
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 823
FaeI CATG 5 cut(s) 371, 760, 827, 877, 1236
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 4 cut(s) 841, 1117, 1386, 1502
FatI CATG 5 cut(s) 367, 756, 823, 873, 1232
FauI CCCGC 1 cut(s) 547
FbaI TGATCA 1 cut(s) 1036
FblI GTMKAC 1 cut(s) 986
FokI GGATG 3 cut(s) 216, 454, 491
FriOI GRGCYC 1 cut(s) 720
FspBI CTAG 8 cut(s) 327, 563, 909, 1080, 1140, 1199, 1203, 1266
GsaI CCCAGC 1 cut(s) 1115
GsuI CTGGAG 3 cut(s) 834, 921, 979
HaeIII GGCC 4 cut(s) 520, 982, 1451, 1512
HapII CCGG 1 cut(s) 799
Hin1II CATG 5 cut(s) 371, 760, 827, 877, 1236
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 2 cut(s) 165, 1008
HinfI GANTC 9 cut(s) 134, 140, 260, 331, 614, 734, 779, 806, 1306
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 1 cut(s) 799
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 3 cut(s) 365, 703, 987
Hpy188III TCNNGA 9 cut(s) 233, 335, 546, 611, 757, 813, 996, 1427, 1551
Hpy8I GTNNAC 3 cut(s) 365, 703, 987
Hpy99I CGWCG 3 cut(s) 349, 589, 835
HpyAV CCTTC 8 cut(s) 115, 173, 292, 406, 829, 861, 930, 1530
HpyCH4III ACNGT 2 cut(s) 385, 1385
HpyCH4IV ACGT 3 cut(s) 210, 1222, 1276
HpyF10VI GCNNNNNNNGC 5 cut(s) 1007, 1136, 1250, 1448, 1509
HpyF3I CTNAG 8 cut(s) 48, 271, 486, 672, 714, 794, 1065, 1245
HpySE526I ACGT 3 cut(s) 210, 1222, 1276
Hsp92II CATG 5 cut(s) 371, 760, 827, 877, 1236
KroI GCCGGC 1 cut(s) 798
KroNI GCCGGC 1 cut(s) 800
Ksp22I TGATCA 1 cut(s) 1036
KspAI GTTAAC 1 cut(s) 703
Kzo9I GATC 5 cut(s) 36, 158, 542, 759, 1036
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 6 cut(s) 124, 513, 815, 1030, 1057, 1480
LweI GCATC 6 cut(s) 361, 472, 1150, 1172, 1196, 1326
MaeI CTAG 8 cut(s) 327, 563, 909, 1080, 1140, 1199, 1203, 1266
MaeII ACGT 3 cut(s) 210, 1222, 1276
MaeIII GTNAC 1 cut(s) 284
MalI GATC 5 cut(s) 38, 160, 544, 761, 1038
MboI GATC 5 cut(s) 36, 158, 542, 759, 1036
MboII GAAGA 7 cut(s) 124, 127, 384, 647, 801, 1160, 1292
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 2 cut(s) 36, 158
MhlI GDGCHC 6 cut(s) 428, 720, 756, 1381, 1497, 1550
MlsI TGGCCA 1 cut(s) 1512
MluCI AATT 8 cut(s) 151, 173, 316, 766, 903, 957, 973, 1290
MluNI TGGCCA 1 cut(s) 1512
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 5 cut(s) 330, 520, 530, 754, 992
Mox20I TGGCCA 1 cut(s) 1512
Mph1103I ATGCAT 2 cut(s) 310, 1165
MroNI GCCGGC 1 cut(s) 798
MscI TGGCCA 1 cut(s) 1512
MseI TTAA 3 cut(s) 702, 1272, 1367
MslI CAYNNNNRTG 1 cut(s) 472
Msp20I TGGCCA 1 cut(s) 1512
MspA1I CMGCKG 3 cut(s) 1111, 1409, 1445
MspI CCGG 1 cut(s) 799
MspR9I CCNGG 5 cut(s) 78, 914, 925, 1135, 1514
MssI GTTTAAAC 1 cut(s) 1273
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 5 cut(s) 78, 914, 925, 1135, 1514
MwoI GCNNNNNNNGC 5 cut(s) 1007, 1136, 1250, 1448, 1509
NaeI GCCGGC 1 cut(s) 800
NcoI CCATGG 1 cut(s) 823
NdeII GATC 5 cut(s) 36, 158, 542, 759, 1036
NgoMIV GCCGGC 1 cut(s) 798
NheI GCTAGC 2 cut(s) 908, 1139
NlaIII CATG 5 cut(s) 371, 760, 827, 877, 1236
NlaIV GGNNCC 4 cut(s) 38, 817, 918, 1518
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 2 cut(s) 310, 1165
PagI TCATGA 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 630
PctI GAATGC 1 cut(s) 242
PdiI GCCGGC 1 cut(s) 800
PfeI GAWTC 8 cut(s) 134, 140, 260, 331, 614, 734, 806, 1306
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 923
PleI GAGTC 1 cut(s) 787
PmaCI CACGTG 1 cut(s) 1223
PmeI GTTTAAAC 1 cut(s) 1273
PmlI CACGTG 1 cut(s) 1223
PpsI GAGTC 1 cut(s) 787
Ppu21I YACGTR 1 cut(s) 1223
PpuMI RGGWCCY 2 cut(s) 1046, 1516
Psp5II RGGWCCY 2 cut(s) 1046, 1516
Psp6I CCWGG 5 cut(s) 76, 912, 923, 1133, 1512
PspCI CACGTG 1 cut(s) 1223
PspFI CCCAGC 1 cut(s) 1111
PspGI CCWGG 5 cut(s) 76, 912, 923, 1133, 1512
PspN4I GGNNCC 4 cut(s) 38, 817, 918, 1518
PspPI GGNCC 2 cut(s) 1046, 1516
PspPPI RGGWCCY 2 cut(s) 1046, 1516
PstI CTGCAG 1 cut(s) 1186
PsuI RGATCY 2 cut(s) 36, 158
PvuII CAGCTG 2 cut(s) 1111, 1409
RsaI GTAC 2 cut(s) 382, 889
RsaNI GTAC 2 cut(s) 381, 888
RseI CAYNNNNRTG 1 cut(s) 472
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 702, 1272, 1367
Sau3AI GATC 5 cut(s) 36, 158, 542, 759, 1036
Sau96I GGNCC 2 cut(s) 1046, 1516
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 5 cut(s) 78, 914, 925, 1135, 1514
SduI GDGCHC 6 cut(s) 428, 720, 756, 1381, 1497, 1550
SfaNI GCATC 6 cut(s) 361, 472, 1150, 1172, 1196, 1326
SfcI CTRYAG 1 cut(s) 1182
SinI GGWCC 2 cut(s) 1046, 1516
SmiMI CAYNNNNRTG 1 cut(s) 472
SmlI CTYRAG 2 cut(s) 162, 1425
SmoI CTYRAG 2 cut(s) 162, 1425
Sse9I AATT 8 cut(s) 151, 173, 316, 766, 903, 957, 973, 1290
SsiI CCGC 4 cut(s) 289, 554, 1339, 1445
SspI AATATT 1 cut(s) 1126
SspMI CTAG 8 cut(s) 327, 563, 909, 1080, 1140, 1199, 1203, 1266
StyD4I CCNGG 5 cut(s) 76, 912, 923, 1133, 1512
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 2 cut(s) 385, 1385
TaiI ACGT 3 cut(s) 213, 1225, 1279
TaqI TCGA 4 cut(s) 242, 762, 1347, 1359
TasI AATT 8 cut(s) 151, 173, 316, 766, 903, 957, 973, 1290
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 8 cut(s) 134, 140, 260, 331, 614, 734, 806, 1306
Tru1I TTAA 3 cut(s) 702, 1272, 1367
Tru9I TTAA 3 cut(s) 702, 1272, 1367
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 218, 252, 1002, 1301, 1409
TspGWI ACGGA 2 cut(s) 667, 1493
TspRI CASTG 1 cut(s) 945
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 1046, 1516
XapI RAATTY 3 cut(s) 173, 766, 1290
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 986
XspI CTAG 8 cut(s) 327, 563, 909, 1080, 1140, 1199, 1203, 1266
ZrmI AGTACT 1 cut(s) 382
Zsp2I ATGCAT 2 cut(s) 310, 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.