Rorug04G0367200

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004396
Physical Location & Seq
Forward (+)
53860645 .. 53861049
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0367200.1

Sequence Viewer

Length: 405 bp
ATGGGGCTCAGGGAGGTCTGTTACTACTTGAAGTCTGGCAGGATGGGCTTTGACGACAGATCTGGTGCAAAACCTCTGAAGCAAGGTGGTCGGGTTTTTGATTCTGGGGATGTCAATGGCAACTTGGGAGGGACTGGACTTCGATCCGCTTCGTTTCCAAGCGGCGACGCCGGCGTCTGGGGGCAACATCGATCTGGAATCTGGGTGGGCTCAAATCGTTTTGGTTCGAGTTTTCTTGGATATCAGTGTGTGGGGCTCGTGGGTGGTCGGAGTTGTTTTGTTGGGGGCATCTGGGATCGAAAACGACGTGGCCATGGAGGCGCCGATGCGGCATCAACGTGGTCGTGGTTATCGCCGCCATGCGAAGGAGATGAAGCATTGGGCCGAGTCTGGGCCTTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

134

Amino Acids

14.24

Weight (kDa)

9.19

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 4 cut(s) 147, 162, 329, 356
AclWI GGATC 2 cut(s) 138, 303
AcoI YGGCCR 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 3 cut(s) 168, 174, 321
AfiI CCNNNNNNNGG 3 cut(s) 177, 365, 391
AgsI TTSAA 1 cut(s) 31
AjiI CACGTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 138, 303
AoxI GGCC 3 cut(s) 310, 382, 393
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 382, 393
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 3 cut(s) 9, 212, 258
BauI CACGAG 1 cut(s) 257
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BfaI CTAG 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 324
BglI GCCNNNNNGGC 2 cut(s) 318, 329
BglII AGATCT 1 cut(s) 59
BisI GCNGC 3 cut(s) 163, 330, 356
BlsI GCNGC 3 cut(s) 164, 331, 357
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 382, 393
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 3 cut(s) 297, 316, 341
Bpu10I CCTNAGC 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 190
BsaHI GRCGYC 3 cut(s) 168, 174, 321
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 365, 391
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 48, 115
BseLI CCNNNNNNNGG 3 cut(s) 177, 365, 391
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 3 cut(s) 312, 384, 395
BshNI GGYRCC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 190
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 177, 365, 391
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 3 cut(s) 312, 384, 395
Bsp1286I GDGCHC 3 cut(s) 9, 212, 258
Bsp143I GATC 4 cut(s) 59, 143, 191, 295
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 4 cut(s) 147, 162, 329, 356
BspANI GGCC 3 cut(s) 312, 384, 395
BspCNI CTCAG 1 cut(s) 21
BspDI ATCGAT 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 2 cut(s) 138, 303
BspT107I GGYRCC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 4 cut(s) 59, 143, 191, 295
BssNI GRCGYC 3 cut(s) 168, 174, 321
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 257
BstACI GRCGYC 3 cut(s) 168, 174, 321
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 48, 115
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 4 cut(s) 62, 146, 194, 298
BstMBI GATC 4 cut(s) 59, 143, 191, 295
BstMWI GCNNNNNNNGC 4 cut(s) 45, 171, 318, 329
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 3 cut(s) 312, 384, 395
BsuTUI ATCGAT 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 313
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 48, 115
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 382, 393
ClaI ATCGAT 1 cut(s) 190
CseI GACGC 2 cut(s) 163, 176
CviAII CATG 2 cut(s) 314, 360
CviJI RGCY 7 cut(s) 7, 48, 210, 256, 312, 384, 395
CviKI_1 RGCY 7 cut(s) 7, 48, 210, 256, 312, 384, 395
DdeI CTNAG 1 cut(s) 8
DinI GGCGCC 1 cut(s) 322
DpnI GATC 4 cut(s) 61, 145, 193, 297
DpnII GATC 4 cut(s) 59, 143, 191, 295
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 3 cut(s) 9, 212, 258
Eco32I GATATC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 3 cut(s) 9, 212, 258
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 317, 363
FaiI YATR 2 cut(s) 315, 361
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 313, 359
Fnu4HI GCNGC 3 cut(s) 163, 330, 356
FokI GGATG 2 cut(s) 55, 122
FriOI GRGCYC 3 cut(s) 9, 212, 258
Fsp4HI GCNGC 3 cut(s) 163, 330, 356
FspBI CTAG 1 cut(s) 403
GlaI GCGC 1 cut(s) 322
GluI GCNGC 3 cut(s) 163, 330, 356
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 3 cut(s) 312, 384, 395
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 163, 176
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 3 cut(s) 168, 174, 321
Hin1II CATG 2 cut(s) 317, 363
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 3 cut(s) 101, 198, 387
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 78, 270
Hpy188III TCNNGA 1 cut(s) 195
Hpy99I CGWCG 2 cut(s) 170, 309
HpyAV CCTTC 1 cut(s) 359
HpyCH4IV ACGT 2 cut(s) 307, 338
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 171, 318, 329
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 307, 338
Hsp92I GRCGYC 3 cut(s) 168, 174, 321
Hsp92II CATG 2 cut(s) 317, 363
HspAI GCGC 1 cut(s) 321
KasI GGCGCC 1 cut(s) 320
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 59, 143, 191, 295
LweI GCATC 3 cut(s) 297, 316, 341
MaeI CTAG 1 cut(s) 403
MaeII ACGT 2 cut(s) 307, 338
MaeIII GTNAC 1 cut(s) 20
MalI GATC 4 cut(s) 61, 145, 193, 297
MboI GATC 4 cut(s) 59, 143, 191, 295
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 3 cut(s) 9, 212, 258
MlsI TGGCCA 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 312
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 4 cut(s) 7, 84, 122, 311
Mox20I TGGCCA 1 cut(s) 312
MreI CGCCGGCG 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 312
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 45, 171, 318, 329
NaeI GCCGGC 1 cut(s) 172
NarI GGCGCC 1 cut(s) 321
NcoI CCATGG 1 cut(s) 313
NdeII GATC 4 cut(s) 59, 143, 191, 295
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 317, 363
NlaIV GGNNCC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 101, 198
PkrI GCNGC 3 cut(s) 164, 331, 357
PleI GAGTC 1 cut(s) 395
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 2 cut(s) 382, 393
PsuI RGATCY 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 337
SatI GCNGC 3 cut(s) 163, 330, 356
Sau3AI GATC 4 cut(s) 59, 143, 191, 295
Sau96I GGNCC 2 cut(s) 382, 393
SchI GAGTC 1 cut(s) 396
SduI GDGCHC 3 cut(s) 9, 212, 258
SetI ASST 5 cut(s) 18, 76, 88, 310, 341
SfaNI GCATC 3 cut(s) 297, 316, 341
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 337
SsiI CCGC 4 cut(s) 147, 162, 329, 356
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 313
TaiI ACGT 2 cut(s) 310, 341
TaqI TCGA 4 cut(s) 142, 190, 227, 298
TauI GCSGC 3 cut(s) 165, 332, 358
TfiI GAWTC 2 cut(s) 101, 198
TscAI CASTG 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 387
TspRI CASTG 1 cut(s) 251
XspI CTAG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.