Rh4DG437000

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004396
Physical Location & Seq
Reverse (-)
64017319 .. 64035501
18183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG437000.1

Sequence Viewer

Length: 1458 bp
ATGCTACTTGGGGTAGAGAAGAAGAGGAAGGAGCAGGAAGACTCTGTATCTACTTTCAATTTGAGATCTCAAGCTTCTGTGTTTGAAGTCACTGGTGGTGCTGATAACTGCAAAGATGTAGATGTTGTGAGTGTTCATCCTGAATGCTCAACTTCAACTGCTGCTGATTTATCAGGCCCAGAGATGATGAGTGACCGCAGGTTTAAGGACAATGCATTAGGCAATTTCAGAGCTAGGAATCAAGAAGACCCGTCGTTAGATTATGATAGTGGACATGATGCAATGAATGTGTCGGCATCCATCTTTGAGTTTCAGAAGGCAGAAAGGGGCACACAAAGACTGCCTCTTGCACCTTTCTCCAAACCAGCTCCATCCAAATGGGATGATGCTCAGAAGTGGATAGCAAGTCCAACTTGGAGCAGGCCGAAGAGTGGGCAAGCAGTTGGACTGCGAAAGGCGGGTACCCTTGGTAATGGGAGTCGCCAACCTACGACAAAGGTTGTTGTTGAAGTTCCAGATCCAAAAGTAGCTAACTTTGACGAGCCGGATACGAAACGGATTGACACAAATCAAGCTAAGATGGAAAGTGCGGGGCAGAAGTTTGTTAGCTGGGAGGCTGACCCATACCACAGTGCTGATTCCTATGGCAAGCCTGTGCTCATGATCGAAAATTCTGTTGGAGAGTCAGCAATCAATCTTAGCCGGCTTGATTCTTCTGGAGCTTTCCATGGCACAACAACATTTATTCCTCCCCCTTCAACGGCAAGGTCTGTGTCAATGAGAGATATGGGTACAGAGATGACACCAATTGCTAGCCAGGAACCTTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCAATTCGTAGTCCAACTAATTCAAGGCCATCTACTCCTACCAGAGCCACACAAGCTTCATCTCTGATTGCTCCATTTATTGACCACATAGATCCTAACAAGGAGTTGTCTGAGAAGGAGAAAACCAGGAGAGAGATAATGGCTCTTGGGACACAGCTGGGTAAGATGAATATTGCTGCCTGGGCTAGCAAAGAAGAGGATAAAGATGCATCAACATCAGTGAAATCTGCACCAGAAGAACAACTAGCTAACAGTGTTATTGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATTTGGCTAGGTTCAAACGTGAAGAGATGAAAATTCAAGCGTGGGAAAATCATCAGAAAGCACAAACAGAAGCAGAGATGAGGAAAGTTGAGGTAGAGATTGAAAGGATAAGGGGACGGGCACACAGTAAGCTAATGAATAAGTTAGCAGCTGCAAGGCATAAGGCTCAAGAAAAGCGAGCAGCAGCTGAGGCCAAGAGAAACCAGCAAGCTGCAAAAACGGAGCAACAAGCAGAGTACATTCGCAGAACTGGCCGAATCCCTTCCACATTTTCTTGTTGGGGTTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

485

Amino Acids

53.53

Weight (kDa)

8.66

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 373 - 476 4.8e-34 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AciI CCGC 3 cut(s) 196, 458, 590
AclWI GGATC 2 cut(s) 512, 944
AcoI YGGCCR 1 cut(s) 1414
AcsI RAATTY 2 cut(s) 670, 1194
AcvI CACGTG 1 cut(s) 1127
AfaI GTAC 3 cut(s) 463, 793, 1400
AfiI CCNNNNNNNGG 2 cut(s) 431, 760
AflIII ACRYGT 1 cut(s) 1124
AgsI TTSAA 9 cut(s) 58, 86, 156, 509, 759, 882, 1177, 1199, 1265
AjnI CCWGG 4 cut(s) 816, 827, 983, 1037
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
Alw21I GWGCWC 2 cut(s) 660, 1454
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 2 cut(s) 512, 944
AlwNI CAGNNNCTG 1 cut(s) 1349
AoxI GGCC 5 cut(s) 175, 422, 884, 1353, 1414
ApeKI GCWGC 9 cut(s) 161, 1034, 1130, 1133, 1310, 1313, 1343, 1346, 1373
ApoI RAATTY 2 cut(s) 670, 1194
Asp700I GAANNNNTTC 1 cut(s) 1423
Asp718I GGTACC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 176
AsuNHI GCTAGC 2 cut(s) 812, 1043
BaeGI GKGCMC 2 cut(s) 332, 1285
BanI GGYRCC 1 cut(s) 461
BbrPI CACGTG 1 cut(s) 1127
BbsI GAAGAC 2 cut(s) 45, 252
Bbv12I GWGCWC 2 cut(s) 660, 1454
BbvCI CCTCAGC 1 cut(s) 1350
BbvI GCAGC 9 cut(s) 148, 1021, 1142, 1145, 1300, 1322, 1355, 1358, 1360
BccI CCATC 4 cut(s) 308, 379, 574, 895
BceAI ACGGC 1 cut(s) 777
BciT130I CCWGG 4 cut(s) 818, 829, 985, 1039
BciVI GTATCC 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 5 cut(s) 234, 813, 1044, 1103, 1170
BfuAI ACCTGC 1 cut(s) 189
BfuI GTATCC 1 cut(s) 541
BglII AGATCT 1 cut(s) 65
BisI GCNGC 9 cut(s) 162, 1035, 1131, 1134, 1311, 1314, 1344, 1347, 1374
BlsI GCNGC 9 cut(s) 163, 1036, 1132, 1135, 1312, 1315, 1345, 1348, 1375
Bme1390I CCNGG 4 cut(s) 818, 829, 985, 1039
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 463, 822
BmrFI CCNGG 4 cut(s) 818, 829, 985, 1039
BmsI GCATC 5 cut(s) 268, 305, 376, 1054, 1076
BmtI GCTAGC 2 cut(s) 816, 1047
BpiI GAAGAC 2 cut(s) 45, 252
BpmI CTGGAG 2 cut(s) 738, 825
Bpu10I CCTNAGC 1 cut(s) 1350
BpuEI CTTGAG 2 cut(s) 54, 1314
BsaAI YACGTR 1 cut(s) 1127
BsaJI CCNNGG 3 cut(s) 466, 727, 1038
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 760
Bse118I RCCGGY 1 cut(s) 702
Bse1I ACTGG 4 cut(s) 97, 838, 842, 1417
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 4 cut(s) 818, 829, 985, 1039
BseDI CCNNGG 3 cut(s) 466, 727, 1038
BseGI GGATG 4 cut(s) 136, 296, 371, 388
BseLI CCNNNNNNNGG 2 cut(s) 431, 760
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 4 cut(s) 404, 960, 1140, 1341
BseNI ACTGG 4 cut(s) 97, 838, 842, 1417
BseRI GAGGAG 1 cut(s) 1157
BseSI GKGCMC 2 cut(s) 332, 1285
BseXI GCAGC 9 cut(s) 148, 1021, 1142, 1145, 1300, 1322, 1355, 1358, 1360
BseYI CCCAGC 2 cut(s) 609, 1015
BsgI GTGCAG 2 cut(s) 1071, 1149
BshFI GGCC 5 cut(s) 177, 424, 886, 1355, 1416
BshNI GGYRCC 1 cut(s) 461
BsiHKAI GWGCWC 2 cut(s) 660, 1454
BsiSI CCGG 2 cut(s) 545, 703
BslFI GGGAC 2 cut(s) 1021, 1290
BslI CCNNNNNNNGG 2 cut(s) 431, 760
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 2 cut(s) 1021, 1290
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 5 cut(s) 177, 424, 886, 1355, 1416
Bsp1286I GDGCHC 4 cut(s) 332, 660, 1285, 1454
Bsp143I GATC 4 cut(s) 65, 517, 663, 949
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 3 cut(s) 196, 458, 590
BspANI GGCC 5 cut(s) 177, 424, 886, 1355, 1416
BspCNI CTCAG 4 cut(s) 403, 961, 1141, 1342
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 463, 822
BspMI ACCTGC 1 cut(s) 189
BspOI GCTAGC 2 cut(s) 816, 1047
BspPI GGATC 2 cut(s) 512, 944
BspT107I GGYRCC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 702
BsrI ACTGG 4 cut(s) 97, 838, 842, 1417
BssAI RCCGGY 1 cut(s) 702
BssECI CCNNGG 3 cut(s) 466, 727, 1038
BssMI GATC 4 cut(s) 65, 517, 663, 949
BssT1I CCWWGG 2 cut(s) 466, 727
Bst2UI CCWGG 4 cut(s) 818, 829, 985, 1039
Bst4CI ACNGT 3 cut(s) 632, 1112, 1289
Bst6I CTCTTC 4 cut(s) 17, 422, 1047, 1179
BstBAI YACGTR 1 cut(s) 1127
BstC8I GCNNGC 8 cut(s) 422, 438, 650, 704, 814, 1045, 1341, 1371
BstDEI CTNAG 6 cut(s) 390, 576, 698, 969, 1149, 1350
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 4 cut(s) 136, 296, 371, 388
BstKTI GATC 4 cut(s) 68, 520, 666, 952
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 4 cut(s) 65, 517, 663, 949
BstMWI GCNNNNNNNGC 5 cut(s) 911, 1040, 1154, 1352, 1413
BstNI CCWGG 4 cut(s) 818, 829, 985, 1039
BstSCI CCNGG 4 cut(s) 816, 827, 983, 1037
BstSLI GKGCMC 2 cut(s) 332, 1285
BstV1I GCAGC 9 cut(s) 148, 1021, 1142, 1145, 1300, 1322, 1355, 1358, 1360
BstV2I GAAGAC 2 cut(s) 45, 252
BstX2I RGATCY 3 cut(s) 65, 517, 949
BstXI CCANNNNNNTGG 2 cut(s) 378, 1165
BstYI RGATCY 3 cut(s) 65, 517, 949
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 5 cut(s) 177, 424, 886, 1355, 1416
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 4 cut(s) 136, 296, 371, 388
BtsIMutI CAGTG 5 cut(s) 90, 637, 849, 1083, 1117
BveI ACCTGC 1 cut(s) 189
Cac8I GCNNGC 8 cut(s) 422, 438, 650, 704, 814, 1045, 1341, 1371
CaiI CAGNNNCTG 1 cut(s) 1349
CciI TCATGA 1 cut(s) 660
Cfr10I RCCGGY 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 3 cut(s) 462, 792, 1399
CviAII CATG 4 cut(s) 275, 661, 728, 1137
CviQI GTAC 3 cut(s) 462, 792, 1399
DdeI CTNAG 6 cut(s) 390, 576, 698, 969, 1149, 1350
DpnI GATC 4 cut(s) 67, 519, 665, 951
DpnII GATC 4 cut(s) 65, 517, 663, 949
EaeI YGGCCR 1 cut(s) 1414
Eam1104I CTCTTC 4 cut(s) 17, 422, 1047, 1179
EarI CTCTTC 4 cut(s) 17, 422, 1047, 1179
Eco130I CCWWGG 2 cut(s) 466, 727
Eco72I CACGTG 1 cut(s) 1127
EcoRII CCWGG 4 cut(s) 816, 827, 983, 1037
EcoT14I CCWWGG 2 cut(s) 466, 727
EcoT22I ATGCAT 2 cut(s) 217, 1069
ErhI CCWWGG 2 cut(s) 466, 727
FaeI CATG 4 cut(s) 278, 664, 731, 1140
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 2 cut(s) 1021, 1290
FatI CATG 4 cut(s) 274, 660, 727, 1136
FauI CCCGC 2 cut(s) 451, 583
Fnu4HI GCNGC 9 cut(s) 162, 1035, 1131, 1134, 1311, 1314, 1344, 1347, 1374
FokI GGATG 4 cut(s) 123, 283, 358, 395
Fsp4HI GCNGC 9 cut(s) 162, 1035, 1131, 1134, 1311, 1314, 1344, 1347, 1374
FspBI CTAG 5 cut(s) 234, 813, 1044, 1103, 1170
GluI GCNGC 9 cut(s) 162, 1035, 1131, 1134, 1311, 1314, 1344, 1347, 1374
GsaI CCCAGC 2 cut(s) 613, 1019
GsuI CTGGAG 2 cut(s) 738, 825
HaeIII GGCC 5 cut(s) 177, 424, 886, 1355, 1416
HapII CCGG 2 cut(s) 545, 703
Hin1II CATG 4 cut(s) 278, 664, 731, 1140
HindIII AAGCTT 2 cut(s) 72, 912
HinfI GANTC 7 cut(s) 41, 238, 478, 638, 683, 710, 1419
HpaII CCGG 2 cut(s) 545, 703
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 6 cut(s) 230, 315, 393, 924, 970, 1218
Hpy188III TCNNGA 7 cut(s) 140, 242, 515, 661, 717, 1331, 1455
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 6 cut(s) 22, 310, 765, 834, 967, 1434
HpyCH4III ACNGT 3 cut(s) 632, 1112, 1289
HpyCH4IV ACGT 2 cut(s) 1126, 1180
HpyCH4V TGCA 9 cut(s) 111, 215, 281, 350, 1067, 1088, 1130, 1316, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 911, 1040, 1154, 1352, 1413
HpyF3I CTNAG 6 cut(s) 390, 576, 698, 969, 1149, 1350
HpySE526I ACGT 2 cut(s) 1126, 1180
Hsp92II CATG 4 cut(s) 278, 664, 731, 1140
KpnI GGTACC 1 cut(s) 465
KroI GCCGGC 1 cut(s) 702
KroNI GCCGGC 1 cut(s) 704
Kzo9I GATC 4 cut(s) 65, 517, 663, 949
LmnI GCTCC 6 cut(s) 31, 373, 417, 719, 934, 1384
Lsp1109I GCAGC 9 cut(s) 148, 1021, 1142, 1145, 1300, 1322, 1355, 1358, 1360
LweI GCATC 5 cut(s) 268, 305, 376, 1054, 1076
MaeI CTAG 5 cut(s) 234, 813, 1044, 1103, 1170
MaeII ACGT 2 cut(s) 1126, 1180
MaeIII GTNAC 2 cut(s) 88, 191
MalI GATC 4 cut(s) 67, 519, 665, 951
MboI GATC 4 cut(s) 65, 517, 663, 949
MboII GAAGA 9 cut(s) 31, 34, 50, 257, 439, 705, 1064, 1106, 1196
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 3 cut(s) 65, 517, 949
MhlI GDGCHC 4 cut(s) 332, 660, 1285, 1454
MluCI AATT 7 cut(s) 58, 223, 670, 807, 861, 877, 1194
MlyI GAGTC 3 cut(s) 35, 487, 692
MmeI TCCRAC 4 cut(s) 424, 434, 658, 896
Mph1103I ATGCAT 2 cut(s) 217, 1069
MroNI GCCGGC 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 1423
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 3 cut(s) 1015, 1313, 1349
MspI CCGG 2 cut(s) 545, 703
MspR9I CCNGG 4 cut(s) 818, 829, 985, 1039
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 4 cut(s) 818, 829, 985, 1039
MwoI GCNNNNNNNGC 5 cut(s) 911, 1040, 1154, 1352, 1413
NaeI GCCGGC 1 cut(s) 704
NcoI CCATGG 1 cut(s) 727
NdeII GATC 4 cut(s) 65, 517, 663, 949
NgoMIV GCCGGC 1 cut(s) 702
NheI GCTAGC 2 cut(s) 812, 1043
NlaIII CATG 4 cut(s) 278, 664, 731, 1140
NlaIV GGNNCC 2 cut(s) 463, 822
NmuCI GTSAC 2 cut(s) 88, 191
NsiI ATGCAT 2 cut(s) 217, 1069
PagI TCATGA 1 cut(s) 660
PctI GAATGC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 1423
PfeI GAWTC 4 cut(s) 238, 638, 710, 1419
PfoI TCCNGGA 1 cut(s) 827
PkrI GCNGC 9 cut(s) 163, 1036, 1132, 1135, 1312, 1315, 1345, 1348, 1375
PleI GAGTC 3 cut(s) 35, 486, 691
PmaCI CACGTG 1 cut(s) 1127
PmlI CACGTG 1 cut(s) 1127
PpsI GAGTC 3 cut(s) 35, 486, 691
Ppu21I YACGTR 1 cut(s) 1127
Psp6I CCWGG 4 cut(s) 816, 827, 983, 1037
PspCI CACGTG 1 cut(s) 1127
PspFI CCCAGC 2 cut(s) 609, 1015
PspGI CCWGG 4 cut(s) 816, 827, 983, 1037
PspN4I GGNNCC 2 cut(s) 463, 822
PspPI GGNCC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 1349
PsuI RGATCY 3 cut(s) 65, 517, 949
PvuII CAGCTG 3 cut(s) 1015, 1313, 1349
RsaI GTAC 3 cut(s) 463, 793, 1400
RsaNI GTAC 3 cut(s) 462, 792, 1399
RseI CAYNNNNRTG 1 cut(s) 376
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 9 cut(s) 162, 1035, 1131, 1134, 1311, 1314, 1344, 1347, 1374
Sau3AI GATC 4 cut(s) 65, 517, 663, 949
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 3 cut(s) 35, 487, 692
ScrFI CCNGG 4 cut(s) 818, 829, 985, 1039
SduI GDGCHC 4 cut(s) 332, 660, 1285, 1454
SfaNI GCATC 5 cut(s) 268, 305, 376, 1054, 1076
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 2 cut(s) 69, 1329
SmoI CTYRAG 2 cut(s) 69, 1329
Sse9I AATT 7 cut(s) 58, 223, 670, 807, 861, 877, 1194
SsiI CCGC 3 cut(s) 196, 458, 590
SspI AATATT 1 cut(s) 1030
SspMI CTAG 5 cut(s) 234, 813, 1044, 1103, 1170
StyD4I CCNGG 4 cut(s) 816, 827, 983, 1037
StyI CCWWGG 2 cut(s) 466, 727
TaaI ACNGT 3 cut(s) 632, 1112, 1289
TaiI ACGT 2 cut(s) 1129, 1183
TaqI TCGA 1 cut(s) 666
TasI AATT 7 cut(s) 58, 223, 670, 807, 861, 877, 1194
TatI WGTACW 1 cut(s) 1398
TfiI GAWTC 4 cut(s) 238, 638, 710, 1419
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 5 cut(s) 97, 637, 849, 1083, 1117
TseFI GTSAC 2 cut(s) 88, 191
TseI GCWGC 9 cut(s) 161, 1034, 1130, 1133, 1310, 1313, 1343, 1346, 1373
Tsp45I GTSAC 2 cut(s) 88, 191
TspDTI ATGAA 6 cut(s) 125, 299, 906, 1040, 1205, 1313
TspGWI ACGGA 2 cut(s) 571, 1397
TspRI CASTG 5 cut(s) 97, 637, 849, 1083, 1117
XapI RAATTY 2 cut(s) 670, 1194
XmnI GAANNNNTTC 1 cut(s) 1423
XspI CTAG 5 cut(s) 234, 813, 1044, 1103, 1170
Zsp2I ATGCAT 2 cut(s) 217, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.