Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004396

Physical Location & Seq

Genomic Coordinates Reverse (-)

57972810 .. 57985518

Gene Structure 12709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG438800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCTACTTGGGGTAGAGAAGAAGAGGAAGGAGCAGGAAGATTCTGTATCTACTTTCAATTTGAGATCTCAAGCTTCTGGATTTGAAGGCACTGGTGGTGCTGATAACTGCAAAGATGTAGATGTTGTGAGTGTTCATCCTGAATGCTCAACTTCAACTGCTGCTGATTTATCAGGCCCAGAGATGATGAGTGACCGCAGGTTTAAGGACAATGCATTAGGCAATTTCAGAGCTAGGAATCAAGAAGACCCGTCGTTAGATTATGATAGTGGACATGATGCAATGAATGTGTCCGCATCCATCTTTGAGTTTCAGAAGGCAGAAAGGGGCACACAAAGACTGCCTCTTGCACCTTTCTCCAAACCAGCTCCATCCAAATGGGATGATGCTCAGAAGTGGATAGCAAGTCCAACTTGGAGCAGGCCGAAGAGTGGGCAAGGAGTTGGATTGCGAAAGGCGGGTAGCCTTGGTAATGGTAGTCGCCAACCTACGACAAAGGTTGTTGTTGAAGTTCCAGATCCAAAAGTAGCTAACTTTGACGAGCCGGATACGAAACGGATTGACACAAATCAAGCTAAGATAGAAAGTGCGGGGCAGAAGTTTGTTAGCTGGGAGGCTGACCCATACCACAGTGCTGATTCCTATGGCAAGCCTGTGCTCATGATAAAAAATTCTGTTGGAGAGTCAGCAATCAATCTTAGCCGGCTTGATTCTTCTGGAGCTTTCCATGGCACAACAACATTTATTCCTCCCCCTTCAACGGCAAGGTCTGTGTCAATGAGAGATATGGGTACAGAGATGACACCAATTGCTAGCCAGGAACCTTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCAATTCGTAGTCCAACTAATTCAAGGCCATCTACTCCTACCAGAGCCGCACAAGCTTCATCTCTGATTGCTCCATCTATTGACCACATAGATCCTAACAAGGAGTTGTCTGAGAAGGAGAAAACTAGGAGAGAGATAATGGCTCTTGGGACACAGCTGGGTAAGATGAATATTGCTGCCTGGGCTAGCAAAGAAGAGGATAAAGATGCATCAACATCAGTGAAATCTGCACCAGCAGAACAACTAGCTAACAGTGTTATTGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATTTGGCTAGGTTAGTAAATTCATGCCGTTTGTGTTTTCTTTACTTATTTCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

406

Amino Acids

44.05

Weight (kDa)

6.57

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170 AT2G02170
fragaria_vesca	FvH4_4g36350 FvH4_4g36350 FvH4_4g36350
malus_domestica	MD13G1009800.v1.1 MD16G1008100.v1.1
prunus_persica	Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1 Prupe.1G342800_v2.0.a1
pyrus_communis	pycom13g00830 pycom16g00790
rosa_chinensis	RchiOBHm_Chr4g0446081
rosa_laevigata	RLG00000005693
rosa_multiflora	Rmu_sc0007511.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386490
rosa_rugosa	Rorug04G0367200 Rorug04G0367300 Rorug04G0367400 Rorug04G0367500 Rorug04G0367600 Rorug04G0367700 Rorug04G0367800
rosa_samantha	Rh4AG429300 Rh4BG438800 Rh4CG456100 Rh4DG437000
rosa_wichuraiana	Rw4G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AciI	CCGC	5 cut(s)	196, 294, 458, 590, 906
AclWI	GGATC	2 cut(s)	512, 944
AcsI	RAATTY	2 cut(s)	670, 1180
AcvI	CACGTG	1 cut(s)	1127
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	2 cut(s)	431, 760
AflIII	ACRYGT	1 cut(s)	1124
AgsI	TTSAA	6 cut(s)	58, 86, 156, 509, 759, 882
AjnI	CCWGG	3 cut(s)	816, 827, 1037
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	1 cut(s)	1115
AlwI	GGATC	2 cut(s)	512, 944
AoxI	GGCC	3 cut(s)	175, 422, 884
ApeKI	GCWGC	4 cut(s)	161, 1034, 1130, 1133
ApoI	RAATTY	2 cut(s)	670, 1180
AspS9I	GGNCC	1 cut(s)	176
AsuNHI	GCTAGC	2 cut(s)	812, 1043
BaeGI	GKGCMC	1 cut(s)	332
BbrPI	CACGTG	1 cut(s)	1127
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	4 cut(s)	148, 1021, 1142, 1145
BccI	CCATC	4 cut(s)	308, 379, 895, 940
BceAI	ACGGC	2 cut(s)	777, 1173
BciT130I	CCWGG	3 cut(s)	818, 829, 1039
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	1115
BfaI	CTAG	6 cut(s)	234, 813, 984, 1044, 1103, 1170
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	5 cut(s)	162, 906, 1035, 1131, 1134
BlsI	GCNGC	5 cut(s)	163, 907, 1036, 1132, 1135
Bme1390I	CCNGG	3 cut(s)	818, 829, 1039
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	3 cut(s)	818, 829, 1039
BmsI	GCATC	5 cut(s)	268, 305, 376, 1054, 1076
BmtI	GCTAGC	2 cut(s)	816, 1047
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	2 cut(s)	738, 825
BpuEI	CTTGAG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	1127
BsaJI	CCNNGG	3 cut(s)	466, 727, 1038
BsaXI	ACNNNNNCTCC	2 cut(s)	823, 853
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 760
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	3 cut(s)	97, 838, 842
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	818, 829, 1039
BseDI	CCNNGG	3 cut(s)	466, 727, 1038
BseGI	GGATG	4 cut(s)	136, 296, 371, 388
BseLI	CCNNNNNNNGG	2 cut(s)	431, 760
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	404, 960, 1140
BseNI	ACTGG	3 cut(s)	97, 838, 842
BseRI	GAGGAG	1 cut(s)	1157
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	148, 1021, 1142, 1145
BseYI	CCCAGC	2 cut(s)	609, 1015
BsgI	GTGCAG	2 cut(s)	1071, 1149
BshFI	GGCC	3 cut(s)	177, 424, 886
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	545, 703
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	2 cut(s)	431, 760
BsmAI	GTCTC	1 cut(s)	1115
BsmFI	GGGAC	1 cut(s)	1021
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	177, 424, 886
Bsp1286I	GDGCHC	2 cut(s)	332, 660
Bsp143I	GATC	3 cut(s)	65, 517, 949
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	5 cut(s)	196, 294, 458, 590, 906
BspANI	GGCC	3 cut(s)	177, 424, 886
BspCNI	CTCAG	3 cut(s)	403, 961, 1141
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	189
BspOI	GCTAGC	2 cut(s)	816, 1047
BspPI	GGATC	2 cut(s)	512, 944
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	702
BsrI	ACTGG	3 cut(s)	97, 838, 842
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	3 cut(s)	466, 727, 1038
BssMI	GATC	3 cut(s)	65, 517, 949
BssT1I	CCWWGG	2 cut(s)	466, 727
Bst2UI	CCWGG	3 cut(s)	818, 829, 1039
Bst4CI	ACNGT	2 cut(s)	632, 1112
Bst6I	CTCTTC	3 cut(s)	17, 422, 1047
BstBAI	YACGTR	1 cut(s)	1127
BstC8I	GCNNGC	5 cut(s)	422, 650, 704, 814, 1045
BstDEI	CTNAG	5 cut(s)	390, 576, 698, 969, 1149
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	4 cut(s)	136, 296, 371, 388
BstKTI	GATC	3 cut(s)	68, 520, 952
BstMAI	GTCTC	1 cut(s)	1115
BstMBI	GATC	3 cut(s)	65, 517, 949
BstMWI	GCNNNNNNNGC	3 cut(s)	911, 1040, 1154
BstNI	CCWGG	3 cut(s)	818, 829, 1039
BstSCI	CCNGG	3 cut(s)	816, 827, 1037
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	148, 1021, 1142, 1145
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	3 cut(s)	65, 517, 949
BstXI	CCANNNNNNTGG	2 cut(s)	378, 1165
BstYI	RGATCY	3 cut(s)	65, 517, 949
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	177, 424, 886
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	4 cut(s)	136, 296, 371, 388
BtsIMutI	CAGTG	5 cut(s)	90, 637, 849, 1083, 1117
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	422, 650, 704, 814, 1045
CciI	TCATGA	1 cut(s)	660
Cfr10I	RCCGGY	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	5 cut(s)	275, 661, 728, 1137, 1185
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	5 cut(s)	390, 576, 698, 969, 1149
DpnI	GATC	3 cut(s)	67, 519, 951
DpnII	GATC	3 cut(s)	65, 517, 949
Eam1104I	CTCTTC	3 cut(s)	17, 422, 1047
EarI	CTCTTC	3 cut(s)	17, 422, 1047
Eco130I	CCWWGG	2 cut(s)	466, 727
Eco72I	CACGTG	1 cut(s)	1127
EcoRII	CCWGG	3 cut(s)	816, 827, 1037
EcoT14I	CCWWGG	2 cut(s)	466, 727
EcoT22I	ATGCAT	2 cut(s)	217, 1069
ErhI	CCWWGG	2 cut(s)	466, 727
FaeI	CATG	5 cut(s)	278, 664, 731, 1140, 1188
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	5 cut(s)	274, 660, 727, 1136, 1184
FauI	CCCGC	2 cut(s)	451, 583
Fnu4HI	GCNGC	5 cut(s)	162, 906, 1035, 1131, 1134
FokI	GGATG	4 cut(s)	123, 283, 358, 395
Fsp4HI	GCNGC	5 cut(s)	162, 906, 1035, 1131, 1134
FspBI	CTAG	6 cut(s)	234, 813, 984, 1044, 1103, 1170
GluI	GCNGC	5 cut(s)	162, 906, 1035, 1131, 1134
GsaI	CCCAGC	2 cut(s)	613, 1019
GsuI	CTGGAG	2 cut(s)	738, 825
HaeIII	GGCC	3 cut(s)	177, 424, 886
HapII	CCGG	2 cut(s)	545, 703
Hin1II	CATG	5 cut(s)	278, 664, 731, 1140, 1188
HindIII	AAGCTT	2 cut(s)	72, 912
HinfI	GANTC	5 cut(s)	41, 238, 638, 683, 710
HpaII	CCGG	2 cut(s)	545, 703
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	230, 315, 393, 924, 970
Hpy188III	TCNNGA	6 cut(s)	78, 140, 242, 515, 661, 717
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	6 cut(s)	22, 80, 310, 765, 834, 967
HpyCH4III	ACNGT	2 cut(s)	632, 1112
HpyCH4IV	ACGT	1 cut(s)	1126
HpyCH4V	TGCA	7 cut(s)	111, 215, 281, 350, 1067, 1088, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	911, 1040, 1154
HpyF3I	CTNAG	5 cut(s)	390, 576, 698, 969, 1149
HpySE526I	ACGT	1 cut(s)	1126
Hsp92II	CATG	5 cut(s)	278, 664, 731, 1140, 1188
KroI	GCCGGC	1 cut(s)	702
KroNI	GCCGGC	1 cut(s)	704
Kzo9I	GATC	3 cut(s)	65, 517, 949
LmnI	GCTCC	5 cut(s)	31, 373, 417, 719, 934
Lsp1109I	GCAGC	4 cut(s)	148, 1021, 1142, 1145
LweI	GCATC	5 cut(s)	268, 305, 376, 1054, 1076
MaeI	CTAG	6 cut(s)	234, 813, 984, 1044, 1103, 1170
MaeII	ACGT	1 cut(s)	1126
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	67, 519, 951
MboI	GATC	3 cut(s)	65, 517, 949
MboII	GAAGA	7 cut(s)	31, 34, 50, 257, 439, 705, 1064
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	3 cut(s)	65, 517, 949
MhlI	GDGCHC	2 cut(s)	332, 660
MluCI	AATT	7 cut(s)	58, 223, 670, 807, 861, 877, 1180
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	4 cut(s)	424, 434, 658, 896
MnlI	CCTC	7 cut(s)	18, 354, 607, 759, 1048, 1135, 1138
Mph1103I	ATGCAT	2 cut(s)	217, 1069
MroNI	GCCGGC	1 cut(s)	702
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	1015
MspI	CCGG	2 cut(s)	545, 703
MspR9I	CCNGG	3 cut(s)	818, 829, 1039
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	3 cut(s)	818, 829, 1039
MwoI	GCNNNNNNNGC	3 cut(s)	911, 1040, 1154
NaeI	GCCGGC	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	3 cut(s)	65, 517, 949
NgoMIV	GCCGGC	1 cut(s)	702
NheI	GCTAGC	2 cut(s)	812, 1043
NlaIII	CATG	5 cut(s)	278, 664, 731, 1140, 1188
NlaIV	GGNNCC	1 cut(s)	822
NmuCI	GTSAC	1 cut(s)	191
NsiI	ATGCAT	2 cut(s)	217, 1069
PagI	TCATGA	1 cut(s)	660
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	704
PfeI	GAWTC	4 cut(s)	41, 238, 638, 710
PfoI	TCCNGGA	1 cut(s)	827
PkrI	GCNGC	5 cut(s)	163, 907, 1036, 1132, 1135
PleI	GAGTC	1 cut(s)	691
PmaCI	CACGTG	1 cut(s)	1127
PmlI	CACGTG	1 cut(s)	1127
PpsI	GAGTC	1 cut(s)	691
Ppu21I	YACGTR	1 cut(s)	1127
Psp6I	CCWGG	3 cut(s)	816, 827, 1037
PspCI	CACGTG	1 cut(s)	1127
PspFI	CCCAGC	2 cut(s)	609, 1015
PspGI	CCWGG	3 cut(s)	816, 827, 1037
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	3 cut(s)	65, 517, 949
PvuII	CAGCTG	1 cut(s)	1015
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	5 cut(s)	162, 906, 1035, 1131, 1134
Sau3AI	GATC	3 cut(s)	65, 517, 949
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	3 cut(s)	818, 829, 1039
SduI	GDGCHC	2 cut(s)	332, 660
SfaNI	GCATC	5 cut(s)	268, 305, 376, 1054, 1076
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	7 cut(s)	58, 223, 670, 807, 861, 877, 1180
SsiI	CCGC	5 cut(s)	196, 294, 458, 590, 906
SspI	AATATT	1 cut(s)	1030
SspMI	CTAG	6 cut(s)	234, 813, 984, 1044, 1103, 1170
StyD4I	CCNGG	3 cut(s)	816, 827, 1037
StyI	CCWWGG	2 cut(s)	466, 727
TaaI	ACNGT	2 cut(s)	632, 1112
TaiI	ACGT	1 cut(s)	1129
TasI	AATT	7 cut(s)	58, 223, 670, 807, 861, 877, 1180
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	4 cut(s)	41, 238, 638, 710
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	5 cut(s)	97, 637, 849, 1083, 1117
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	4 cut(s)	161, 1034, 1130, 1133
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	5 cut(s)	125, 299, 906, 1040, 1173
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	5 cut(s)	97, 637, 849, 1083, 1117
XapI	RAATTY	2 cut(s)	670, 1180
XspI	CTAG	6 cut(s)	234, 813, 984, 1044, 1103, 1170
Zsp2I	ATGCAT	2 cut(s)	217, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.