Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Reverse (-)

862029 .. 864452

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTCCGGTTAATGCGGAGGTTGAGGAGATGAGATCAGAGTCGCCGGTGGTTAATGATAAGGCGTTAGATATTTCTGATGATGATCATGATGATGAGAATGAACCGCTTATTGTTTCTGGTGAATGTCGTATTTGTTCTGATGAGTCTCCTGTTGAGAATCTTGAGAGCCCTTGTGCTTGCAGTGGCAGCCTAAAGTATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAGCCTTATCAACCTGGATATACCGCTCCACCACCTCCACTTCAGCCTGAAGAAACAACTATTGACATTGGTGGAGGATGGACAATCTCAGGTTTGGATGTGCATGATCCTCGTCTCCTTGCAATTGCTGAAGCTGAACGTCGGTATTTAGAGTCTGAATATGTGGAATATACAGCTTCAAGTGCAAGCGGGGCCGCATTCTGTCGCTCAGCTGCTCTAATATTAATGGCTCTTCTTCTCTTACGACACGCACTGACCATAACAGATGATACTGATGGCGAAGAAGACGACCCATCTTCGATACTATCTCTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATCAGTATTCTACAGCGCCGAAGACAGAGACAGGAAGCTGCAGCTTTGGCTACACAGTTTGCGTTGGTGCTTCAGTCAGGGCAGCCTAGAACAGTTCACTTCACGGTATCACCGGGAATATCATCATCCGCCGTGGCTCATGCGACTACATCTACACAACAACAGCATGACGATCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

271

Amino Acids

29.59

Weight (kDa)

4.59

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	43 - 88	1.5e-13	RING-variant domain
DUF3675	PF12428	94 - 212	7.6e-43	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	809
AccBSI	CCGCTC	1 cut(s)	293
AciI	CCGC	6 cut(s)	17, 107, 291, 456, 462, 762
AclWI	GGATC	2 cut(s)	368, 800
AcuI	CTGAAG	4 cut(s)	293, 336, 417, 689
AgsI	TTSAA	1 cut(s)	447
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	6 cut(s)	401, 443, 479, 593, 671, 677
AluI	AGCT	6 cut(s)	401, 443, 479, 593, 671, 677
Alw26I	GTCTC	4 cut(s)	9, 153, 386, 655
AlwI	GGATC	2 cut(s)	368, 800
AoxI	GGCC	2 cut(s)	459, 630
ApeKI	GCWGC	6 cut(s)	189, 479, 593, 671, 674, 715
AseI	ATTAAT	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	2 cut(s)	459, 630
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	3 cut(s)	134, 257, 735
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	558, 661
BbvI	GCAGC	6 cut(s)	201, 466, 580, 658, 686, 727
BccI	CCATC	4 cut(s)	339, 536, 568, 641
BceAI	ACGGC	1 cut(s)	749
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	4 cut(s)	9, 153, 386, 655
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	644, 672
BfoI	RGCGCY	1 cut(s)	652
BisI	GCNGC	7 cut(s)	190, 462, 480, 594, 672, 675, 716
BlpI	GCTNAGC	1 cut(s)	475
BlsI	GCNGC	7 cut(s)	191, 463, 481, 595, 673, 676, 717
Bme1390I	CCNGG	2 cut(s)	282, 747
BmgT120I	GGNCC	2 cut(s)	459, 630
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	282, 747
BpiI	GAAGAC	2 cut(s)	558, 661
Bpu1102I	GCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	747
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	7
Bse118I	RCCGGY	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	3 cut(s)	350, 370, 758
BseJI	GATNNNNATC	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	369, 489
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	6 cut(s)	201, 466, 580, 658, 686, 727
BshFI	GGCC	2 cut(s)	461, 632
BsiSI	CCGG	3 cut(s)	8, 47, 746
BsmAI	GTCTC	4 cut(s)	9, 153, 386, 655
BsmBI	CGTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	461, 632
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	35, 85, 373, 805
Bsp1720I	GCTNAGC	1 cut(s)	475
BspACI	CCGC	6 cut(s)	17, 107, 291, 456, 462, 762
BspANI	GGCC	2 cut(s)	461, 632
BspCNI	CTCAG	2 cut(s)	368, 488
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	2 cut(s)	368, 800
BspQI	GCTCTTC	1 cut(s)	504
BsrBI	CCGCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	4 cut(s)	35, 85, 373, 805
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	690, 727, 739
Bst6I	CTCTTC	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	181, 454
BstDEI	CTNAG	2 cut(s)	355, 475
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	3 cut(s)	350, 370, 758
BstH2I	RGCGCY	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	4 cut(s)	38, 88, 376, 808
BstMAI	GTCTC	4 cut(s)	9, 153, 386, 655
BstMBI	GATC	4 cut(s)	35, 85, 373, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 449, 458, 680
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	280, 745
BstSFI	CTRYAG	2 cut(s)	644, 672
BstV1I	GCAGC	6 cut(s)	201, 466, 580, 658, 686, 727
BstV2I	GAAGAC	2 cut(s)	558, 661
BsuRI	GGCC	2 cut(s)	461, 632
BtgI	CCRYGG	1 cut(s)	765
BtsCI	GGATG	3 cut(s)	350, 370, 758
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	190, 518
Cac8I	GCNNGC	2 cut(s)	181, 454
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	651
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	459, 630
CviAII	CATG	6 cut(s)	89, 371, 612, 622, 773, 800
DdeI	CTNAG	2 cut(s)	355, 475
DpnI	GATC	4 cut(s)	37, 87, 375, 807
DpnII	GATC	4 cut(s)	35, 85, 373, 805
DrdI	GACNNNNNNGTC	1 cut(s)	809
DseDI	GACNNNNNNGTC	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	173
Eco57I	CTGAAG	4 cut(s)	293, 336, 417, 689
EcoRII	CCWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	6 cut(s)	92, 374, 615, 625, 776, 803
FatI	CATG	6 cut(s)	88, 370, 611, 621, 772, 799
FauI	CCCGC	1 cut(s)	449
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	190, 462, 480, 594, 672, 675, 716
FokI	GGATG	3 cut(s)	357, 377, 745
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	7 cut(s)	190, 462, 480, 594, 672, 675, 716
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	7 cut(s)	190, 462, 480, 594, 672, 675, 716
HaeII	RGCGCY	1 cut(s)	652
HaeIII	GGCC	2 cut(s)	461, 632
HapII	CCGG	3 cut(s)	8, 47, 746
HhaI	GCGC	1 cut(s)	651
Hin1II	CATG	6 cut(s)	92, 374, 615, 625, 776, 803
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HinfI	GANTC	4 cut(s)	41, 146, 160, 419
HpaII	CCGG	3 cut(s)	8, 47, 746
HphI	GGTGA	3 cut(s)	134, 257, 735
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188I	TCNGA	6 cut(s)	40, 79, 142, 424, 590, 815
Hpy188III	TCNNGA	2 cut(s)	89, 164
Hpy8I	GTNNAC	1 cut(s)	730
Hpy99I	CGWCG	1 cut(s)	411
HpyCH4III	ACNGT	3 cut(s)	690, 727, 739
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	183, 231, 370, 389, 452, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 449, 458, 680
HpyF3I	CTNAG	2 cut(s)	355, 475
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	6 cut(s)	92, 374, 615, 625, 776, 803
HspAI	GCGC	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	35, 85, 373, 805
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	298, 591
Lsp1109I	GCAGC	6 cut(s)	201, 466, 580, 658, 686, 727
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	37, 87, 375, 807
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	4 cut(s)	35, 85, 373, 805
MboII	GAAGA	9 cut(s)	329, 491, 494, 555, 560, 563, 596, 599, 666
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	1 cut(s)	390
MlyI	GAGTC	3 cut(s)	50, 155, 428
MnlI	CCTC	5 cut(s)	13, 19, 312, 335, 387
MseI	TTAA	3 cut(s)	12, 54, 491
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	3 cut(s)	8, 47, 746
MspR9I	CCNGG	2 cut(s)	282, 747
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	189, 449, 458, 680
NciI	CCSGG	1 cut(s)	747
NdeII	GATC	4 cut(s)	35, 85, 373, 805
NlaIII	CATG	6 cut(s)	92, 374, 615, 625, 776, 803
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	263
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	504
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	7 cut(s)	191, 463, 481, 595, 673, 676, 717
PleI	GAGTC	3 cut(s)	49, 154, 427
PpsI	GAGTC	3 cut(s)	49, 154, 427
PshBI	ATTAAT	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	2 cut(s)	459, 630
PstI	CTGCAG	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	12, 54, 491
SatI	GCNGC	7 cut(s)	190, 462, 480, 594, 672, 675, 716
Sau3AI	GATC	4 cut(s)	35, 85, 373, 805
Sau96I	GGNCC	2 cut(s)	459, 630
SchI	GAGTC	3 cut(s)	50, 155, 428
ScrFI	CCNGG	2 cut(s)	282, 747
SduI	GDGCHC	1 cut(s)	173
SfcI	CTRYAG	2 cut(s)	644, 672
SgrAI	CRCCGGYG	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	6 cut(s)	17, 107, 291, 456, 462, 762
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	2 cut(s)	280, 745
TaaI	ACNGT	3 cut(s)	690, 727, 739
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	566
TasI	AATT	1 cut(s)	390
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	12, 54, 491
Tru9I	TTAA	3 cut(s)	12, 54, 491
TscAI	CASTG	2 cut(s)	190, 525
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	6 cut(s)	189, 479, 593, 671, 674, 715
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	117, 249
TspRI	CASTG	2 cut(s)	190, 525
VspI	ATTAAT	1 cut(s)	491
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.