Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

60893511 .. 60897032

Gene Structure 3522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGTGACCACATAGTGTTGTACGTCGACCGTCTCATTAGGCCCATGGCCTCGCAGCCGCCGTCCGACGTTAAGGCGGCAGTGGAGGACCCGGCGCCGGATTACGAGGCCGGACCTTCGTCTAGCTCGTCGGCGGCGGCGGAGGGCGACTGCGGCGAGGAGGAGGAGCCGTTGATTCAGGCGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCGTCAACAATTTGGAAACTCCTTGTGCCTGCTGCGGCAGCCTCAAGTATGCTCATAGGAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGCCATCAGCCTTACCAACCAGGCTACACTGCACCTCCTCGTCCACATCCTGATGAAACTACTATTGAAATAGGAGGCTGGACACTTTCTGGGTCTCCTTTGAGTTTGGACGATCCACGCATCTTGTCAATTACAGAAGCAGAACGTCAGTTTCTGGATACTGAATATGATGAGTATGCTGCTTCAAGTAGCAATGGGGCTCCATTTTTCCGATCCGCTGCCTTAATTCTAATGGCCCTTCTTATCTTGCGACATGCATTGAGGGTCACAGATGATGATTCCGGTGATGATACATCTGCTATTTTCTCACTCTTTTTGCTTCGAGCGGCTGGATTTCTTTTGCCCTGCTACATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAAGCTGCAGCATTGGCAGCAACACAAGTTGCTTTTGTTCTTCAATCTGGGCAACATAGGGGTCTGCAGTTTGCGGTAGCATCAGGGCCCCCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

273

Amino Acids

29.73

Weight (kDa)

4.59

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	64 - 109	4.9e-12	RING-variant domain
DUF3675	PF12428	115 - 231	2.6e-39	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	650
AccI	GTMKAC	2 cut(s)	27, 709
AclWI	GGATC	2 cut(s)	431, 531
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	97, 208
AgsI	TTSAA	3 cut(s)	392, 510, 767
AjnI	CCWGG	2 cut(s)	201, 343
AluBI	AGCT	2 cut(s)	126, 728
AluI	AGCT	2 cut(s)	126, 728
Alw26I	GTCTC	2 cut(s)	38, 423
AlwI	GGATC	2 cut(s)	431, 531
AlwNI	CAGNNNCTG	1 cut(s)	478
AoxI	GGCC	6 cut(s)	41, 48, 108, 558, 687, 809
ApaI	GGGCCC	1 cut(s)	813
ApeKI	GCWGC	9 cut(s)	55, 246, 252, 503, 542, 703, 728, 731, 740
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	7 cut(s)	42, 88, 113, 559, 687, 809, 810
AsuC2I	CCSGG	2 cut(s)	92, 815
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	88, 113
BaeGI	GKGCMC	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	526, 813
BbvI	GCAGC	9 cut(s)	67, 233, 264, 490, 529, 715, 715, 743, 752
BccI	CCATC	2 cut(s)	336, 698
BceAI	ACGGC	2 cut(s)	46, 154
BciT130I	CCWGG	2 cut(s)	203, 345
BciVI	GTATCC	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	92, 815
BcoDI	GTCTC	2 cut(s)	38, 423
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	729, 788
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	475
Bme1390I	CCNGG	4 cut(s)	92, 203, 345, 815
Bme18I	GGWCC	2 cut(s)	88, 113
BmgT120I	GGNCC	7 cut(s)	42, 88, 113, 559, 687, 809, 810
BmiI	GGNNCC	6 cut(s)	90, 96, 168, 525, 811, 812
BmrFI	CCNGG	4 cut(s)	92, 203, 345, 815
BmsI	GCATC	2 cut(s)	453, 812
BoxI	GACNNNNGTC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	92, 815
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	45, 813
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 208
Bse3DI	GCAATG	2 cut(s)	301, 523
BseBI	CCWGG	2 cut(s)	203, 345
BseDI	CCNNGG	2 cut(s)	45, 813
BseGI	GGATG	2 cut(s)	211, 370
BseLI	CCNNNNNNNGG	2 cut(s)	97, 208
BseMI	GCAATG	2 cut(s)	301, 523
BseRI	GAGGAG	4 cut(s)	173, 176, 179, 351
BseSI	GKGCMC	1 cut(s)	813
BseXI	GCAGC	9 cut(s)	67, 233, 264, 490, 529, 715, 715, 743, 752
BsgI	GTGCAG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	6 cut(s)	43, 50, 110, 560, 689, 811
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	5 cut(s)	92, 98, 111, 606, 815
BslI	CCNNNNNNNGG	2 cut(s)	97, 208
BsmAI	GTCTC	2 cut(s)	38, 423
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	6 cut(s)	43, 50, 110, 560, 689, 811
Bso31I	GGTCTC	1 cut(s)	423
Bsp120I	GGGCCC	1 cut(s)	809
Bsp1286I	GDGCHC	2 cut(s)	526, 813
Bsp143I	GATC	2 cut(s)	436, 536
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	6 cut(s)	43, 50, 110, 560, 689, 811
BspLI	GGNNCC	6 cut(s)	90, 96, 168, 525, 811, 812
BspMAI	CTGCAG	2 cut(s)	733, 792
BspPI	GGATC	2 cut(s)	431, 531
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	423
BsrBI	CCGCTC	1 cut(s)	650
BsrDI	GCAATG	2 cut(s)	301, 523
BssECI	CCNNGG	2 cut(s)	45, 813
BssMI	GATC	2 cut(s)	436, 536
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	203, 345
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	211, 370
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	439, 539
BstMAI	GTCTC	2 cut(s)	38, 423
BstMBI	GATC	2 cut(s)	436, 536
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 198, 252, 712, 737, 740
BstNI	CCWGG	2 cut(s)	203, 345
BstNSI	RCATGY	1 cut(s)	581
BstPAI	GACNNNNGTC	1 cut(s)	118
BstSCI	CCNGG	4 cut(s)	90, 201, 343, 813
BstSFI	CTRYAG	2 cut(s)	729, 788
BstSLI	GKGCMC	1 cut(s)	813
BstV1I	GCAGC	9 cut(s)	67, 233, 264, 490, 529, 715, 715, 743, 752
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	6 cut(s)	43, 50, 110, 560, 689, 811
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	211, 370
BtsI	GCAGTG	2 cut(s)	87, 351
BtsIMutI	CAGTG	2 cut(s)	87, 351
Cac8I	GCNNGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	7 cut(s)	42, 88, 113, 559, 687, 809, 810
CseI	GACGC	2 cut(s)	205, 695
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	2 cut(s)	46, 578
CviQI	GTAC	1 cut(s)	22
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	2 cut(s)	438, 538
DpnII	GATC	2 cut(s)	436, 536
DraIII	CACNNNGTG	1 cut(s)	16
EciI	GGCGGA	2 cut(s)	155, 200
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	526, 813
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	88, 113
EcoO109I	RGGNCCY	3 cut(s)	88, 809, 810
EcoRII	CCWGG	2 cut(s)	201, 343
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	2 cut(s)	526, 813
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	49, 581
FatI	CATG	2 cut(s)	45, 577
FblI	GTMKAC	2 cut(s)	27, 709
FokI	GGATG	2 cut(s)	218, 357
FriOI	GRGCYC	2 cut(s)	526, 813
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	6 cut(s)	43, 50, 110, 560, 689, 811
HapII	CCGG	5 cut(s)	92, 98, 111, 606, 815
HgaI	GACGC	2 cut(s)	205, 695
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	49, 581
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	3 cut(s)	28, 220, 710
HindII	GTYRAC	3 cut(s)	28, 220, 710
HinfI	GANTC	2 cut(s)	175, 602
HpaII	CCGG	5 cut(s)	92, 98, 111, 606, 815
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	4 cut(s)	28, 220, 368, 710
Hpy188I	TCNGA	2 cut(s)	67, 536
Hpy188III	TCNNGA	2 cut(s)	374, 479
Hpy8I	GTNNAC	4 cut(s)	28, 220, 368, 710
Hpy99I	CGWCG	4 cut(s)	29, 71, 133, 711
HpyAV	CCTTC	2 cut(s)	126, 572
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	24, 69, 469
HpyCH4V	TGCA	6 cut(s)	294, 356, 581, 703, 731, 790
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 198, 252, 712, 737, 740
HpySE526I	ACGT	3 cut(s)	24, 69, 469
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	49, 581
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	436, 536
LmnI	GCTCC	2 cut(s)	166, 529
Lsp1109I	GCAGC	9 cut(s)	67, 233, 264, 490, 529, 715, 715, 743, 752
LweI	GCATC	2 cut(s)	453, 812
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	3 cut(s)	24, 69, 469
MaeIII	GTNAC	2 cut(s)	5, 589
MalI	GATC	2 cut(s)	438, 538
MbiI	CCGCTC	1 cut(s)	650
MboI	GATC	2 cut(s)	436, 536
MboII	GAAGA	1 cut(s)	755
MhlI	GDGCHC	2 cut(s)	526, 813
MluCI	AATT	4 cut(s)	223, 321, 453, 549
Mly113I	GGCGCC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	2 cut(s)	72, 548
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	5 cut(s)	92, 98, 111, 606, 815
MspR9I	CCNGG	4 cut(s)	92, 203, 345, 815
MvaI	CCWGG	2 cut(s)	203, 345
MwoI	GCNNNNNNNGC	6 cut(s)	153, 198, 252, 712, 737, 740
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	92, 815
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	436, 536
NlaIII	CATG	2 cut(s)	49, 581
NlaIV	GGNNCC	6 cut(s)	90, 96, 168, 525, 811, 812
NmuCI	GTSAC	2 cut(s)	5, 589
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 125
PfeI	GAWTC	2 cut(s)	175, 602
PluTI	GGCGCC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	201, 343
PspGI	CCWGG	2 cut(s)	201, 343
PspN4I	GGNNCC	6 cut(s)	90, 96, 168, 525, 811, 812
PspOMI	GGGCCC	1 cut(s)	809
PspPI	GGNCC	7 cut(s)	42, 88, 113, 559, 687, 809, 810
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	2 cut(s)	733, 792
PstNI	CAGNNNCTG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	375
SalI	GTCGAC	2 cut(s)	26, 708
SaqAI	TTAA	2 cut(s)	72, 548
Sau3AI	GATC	2 cut(s)	436, 536
Sau96I	GGNCC	7 cut(s)	42, 88, 113, 559, 687, 809, 810
ScrFI	CCNGG	4 cut(s)	92, 203, 345, 815
SduI	GDGCHC	2 cut(s)	526, 813
SetI	ASST	7 cut(s)	27, 72, 118, 128, 361, 472, 730
SfaNI	GCATC	2 cut(s)	453, 812
SfcI	CTRYAG	2 cut(s)	729, 788
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	2 cut(s)	88, 113
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	223, 321, 453, 549
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	4 cut(s)	90, 201, 343, 813
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	3 cut(s)	27, 72, 472
TaqI	TCGA	3 cut(s)	27, 646, 709
TasI	AATT	4 cut(s)	223, 321, 453, 549
TauI	GCSGC	9 cut(s)	61, 80, 137, 140, 156, 185, 195, 252, 653
TfiI	GAWTC	2 cut(s)	175, 602
Tru1I	TTAA	2 cut(s)	72, 548
Tru9I	TTAA	2 cut(s)	72, 548
TscAI	CASTG	2 cut(s)	87, 358
TseFI	GTSAC	2 cut(s)	5, 589
TseI	GCWGC	9 cut(s)	55, 246, 252, 503, 542, 703, 728, 731, 740
Tsp45I	GTSAC	2 cut(s)	5, 589
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	87, 358
VpaK11BI	GGWCC	2 cut(s)	88, 113
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	2 cut(s)	27, 709
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.