Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

4028193 .. 4031008

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGCGACCACCTAGTTTTGTACGTTGACCGTCTCCTTCGGCCCAAGGCAGCGCAGCCGCCTTCCGAACCTGCTGCTGAGGCCGGTTATGTGCCCGAGCCGGCTGGACCGGAGCCGGAGCGGGATGCTGCCGGGCCGTCTTCGAGTTCGTCAGCGGGGGAGGCGGATGAGGACGAACCGCTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCATTAGCAATTTGGAATCTCCTTGCGCCTGCTGTGGCAGCCTCAAGTATGCTCATAGAAAATGCGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGTCATCAGCCTTACCAACCTGGCTATACTGCACCTCCTCGTTTGCCATCTGATGAAACTACTATTGAATTTGGTGGTGCCTGGACACTTTCTGGTACTCCCTTGAGTTTGGATGATCCACGCATTTTGTCAATTGCTGAGGCAGAACGTCAGTTTATGGATACTGAGTATGATGATTATTCTTCAACTAGTAGTGGGGCTCCATTCTTCCGTTCAGCGGCCTTAATTCTTTGGTTTTTTATCTTGCAGTTAATGGGCCTTCTAATCTTGCGGCATGCAATGAGAGTCTCAGATTCTGACTCCGACTCTGGGGATGACTCATCTGCTATTTTCTCTCTTTTCTTGCTTAGAGCGGCTGGCTTTCTTTTGCCCTGCTATATTATGGCTTGGGCGATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAGGCCGCAGCAATGGCAGCAACCCAAGTTGCTTTTGTTCTTCAATCCGGGCAACATAGGGGTGTACAATTTGCGGTAGCACCAGGACCCAATGGAAGTCCACATCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

293

Amino Acids

31.77

Weight (kDa)

4.61

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	410
AccBSI	CCGCTC	2 cut(s)	121, 686
AccI	GTMKAC	1 cut(s)	745
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	330, 401
AfaI	GTAC	3 cut(s)	23, 430, 825
AfiI	CCNNNNNNNGG	3 cut(s)	217, 550, 642
AgsI	TTSAA	3 cut(s)	401, 519, 803
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	4 cut(s)	210, 352, 413, 841
Alw26I	GTCTC	2 cut(s)	38, 625
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	6 cut(s)	41, 81, 134, 552, 589, 762
ApeKI	GCWGC	8 cut(s)	50, 55, 74, 128, 261, 739, 767, 776
ApoI	RAATTY	2 cut(s)	330, 401
AspLEI	GCGC	2 cut(s)	55, 251
AspS9I	GGNCC	5 cut(s)	42, 107, 134, 589, 845
AsuC2I	CCSGG	2 cut(s)	133, 808
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	107, 845
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	132
BbvCI	CCTCAGC	2 cut(s)	78, 471
BbvI	GCAGC	8 cut(s)	61, 62, 67, 115, 273, 751, 779, 788
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	121, 207
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	4 cut(s)	212, 354, 415, 843
BciVI	GTATCC	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	133, 808
BcoDI	GTCTC	2 cut(s)	38, 625
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	2 cut(s)	14, 522
BfuAI	ACCTGC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	487
Bme1390I	CCNGG	6 cut(s)	133, 212, 354, 415, 808, 843
Bme18I	GGWCC	2 cut(s)	107, 845
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	5 cut(s)	42, 107, 134, 589, 845
BmiI	GGNNCC	4 cut(s)	114, 412, 534, 847
BmrFI	CCNGG	6 cut(s)	133, 212, 354, 415, 808, 843
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	2 cut(s)	78, 471
BpuEI	CTTGAG	2 cut(s)	251, 457
BpuMI	CCSGG	2 cut(s)	133, 808
BsaBI	GATNNNNATC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 550, 642
Bse118I	RCCGGY	2 cut(s)	83, 100
Bse3DI	GCAATG	3 cut(s)	310, 618, 777
Bse8I	GATNNNNATC	1 cut(s)	731
BseBI	CCWGG	4 cut(s)	212, 354, 415, 843
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	5 cut(s)	130, 172, 220, 451, 652
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	3 cut(s)	217, 550, 642
BseMI	GCAATG	3 cut(s)	310, 618, 777
BseMII	CTCAG	4 cut(s)	69, 462, 489, 636
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	8 cut(s)	61, 62, 67, 115, 273, 751, 779, 788
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	6 cut(s)	43, 83, 136, 554, 591, 764
BshNI	GGYRCC	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	6 cut(s)	84, 101, 110, 116, 132, 807
BslI	CCNNNNNNNGG	3 cut(s)	217, 550, 642
BsmAI	GTCTC	2 cut(s)	38, 625
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	6 cut(s)	43, 83, 136, 554, 591, 764
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	96, 535
Bsp1407I	TGTACA	1 cut(s)	823
Bsp143I	GATC	2 cut(s)	448, 726
BspANI	GGCC	6 cut(s)	43, 83, 136, 554, 591, 764
BspCNI	CTCAG	4 cut(s)	70, 463, 490, 635
BspLI	GGNNCC	4 cut(s)	114, 412, 534, 847
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	410
BsrBI	CCGCTC	2 cut(s)	121, 686
BsrDI	GCAATG	3 cut(s)	310, 618, 777
BsrFI	RCCGGY	2 cut(s)	83, 100
BsrGI	TGTACA	1 cut(s)	823
BssAI	RCCGGY	2 cut(s)	83, 100
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	448, 726
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	4 cut(s)	212, 354, 415, 843
Bst4CI	ACNGT	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	823
BstC8I	GCNNGC	4 cut(s)	102, 253, 609, 691
BstDEI	CTNAG	5 cut(s)	78, 471, 498, 622, 680
BstF5I	GGATG	5 cut(s)	130, 172, 220, 451, 652
BstHHI	GCGC	2 cut(s)	55, 251
BstKTI	GATC	2 cut(s)	451, 729
BstMAI	GTCTC	2 cut(s)	38, 625
BstMBI	GATC	2 cut(s)	448, 726
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 161, 207, 261, 748, 773, 776
BstNI	CCWGG	4 cut(s)	212, 354, 415, 843
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	6 cut(s)	131, 210, 352, 413, 806, 841
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	8 cut(s)	61, 62, 67, 115, 273, 751, 779, 788
BstV2I	GAAGAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	6 cut(s)	43, 83, 136, 554, 591, 764
BtsCI	GGATG	5 cut(s)	130, 172, 220, 451, 652
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	4 cut(s)	102, 253, 609, 691
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	2 cut(s)	55, 251
Cfr10I	RCCGGY	2 cut(s)	83, 100
Cfr13I	GGNCC	5 cut(s)	42, 107, 134, 589, 845
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	3 cut(s)	22, 429, 824
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	3 cut(s)	22, 429, 824
DdeI	CTNAG	5 cut(s)	78, 471, 498, 622, 680
DpnI	GATC	2 cut(s)	450, 728
DpnII	GATC	2 cut(s)	448, 726
EciI	GGCGGA	2 cut(s)	179, 209
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	107, 845
Eco88I	CYCGRG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	845
EcoRII	CCWGG	4 cut(s)	210, 352, 413, 841
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	611
FatI	CATG	1 cut(s)	607
FauI	CCCGC	2 cut(s)	114, 148
FblI	GTMKAC	1 cut(s)	745
FokI	GGATG	5 cut(s)	137, 179, 227, 458, 659
FriOI	GRGCYC	1 cut(s)	535
FspBI	CTAG	2 cut(s)	14, 522
GlaI	GCGC	2 cut(s)	54, 250
HaeIII	GGCC	6 cut(s)	43, 83, 136, 554, 591, 764
HapII	CCGG	6 cut(s)	84, 101, 110, 116, 132, 807
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	2 cut(s)	55, 251
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	2 cut(s)	53, 249
HinP1I	GCGC	2 cut(s)	53, 249
HincII	GTYRAC	2 cut(s)	28, 746
HindII	GTYRAC	2 cut(s)	28, 746
HinfI	GANTC	7 cut(s)	184, 239, 618, 626, 632, 638, 650
HpaII	CCGG	6 cut(s)	84, 101, 110, 116, 132, 807
Hpy166II	GTNNAC	4 cut(s)	28, 746, 824, 860
Hpy188I	TCNGA	6 cut(s)	67, 189, 385, 625, 631, 637
Hpy188III	TCNNGA	1 cut(s)	866
Hpy8I	GTNNAC	4 cut(s)	28, 746, 824, 860
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	3 cut(s)	47, 72, 602
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	24, 481
HpyCH4V	TGCA	5 cut(s)	303, 365, 580, 611, 739
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 161, 207, 261, 748, 773, 776
HpyF3I	CTNAG	5 cut(s)	78, 471, 498, 622, 680
HpySE526I	ACGT	2 cut(s)	24, 481
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	2 cut(s)	53, 249
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	448, 726
LmnI	GCTCC	3 cut(s)	112, 118, 538
Lsp1109I	GCAGC	8 cut(s)	61, 62, 67, 115, 273, 751, 779, 788
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	14, 522
MaeII	ACGT	2 cut(s)	24, 481
MalI	GATC	2 cut(s)	450, 728
MbiI	CCGCTC	2 cut(s)	121, 686
MboI	GATC	2 cut(s)	448, 726
MboII	GAAGA	4 cut(s)	132, 507, 532, 791
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	2 cut(s)	96, 535
MluCI	AATT	6 cut(s)	232, 330, 401, 465, 558, 827
MlyI	GAGTC	4 cut(s)	626, 627, 632, 644
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	9 cut(s)	73, 154, 163, 211, 275, 378, 381, 466, 754
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	2 cut(s)	557, 584
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	3 cut(s)	155, 181, 551
MspI	CCGG	6 cut(s)	84, 101, 110, 116, 132, 807
MspR9I	CCNGG	6 cut(s)	133, 212, 354, 415, 808, 843
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	4 cut(s)	212, 354, 415, 843
MwoI	GCNNNNNNNGC	7 cut(s)	80, 161, 207, 261, 748, 773, 776
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	133, 808
NdeII	GATC	2 cut(s)	448, 726
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	4 cut(s)	114, 412, 534, 847
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	184, 239, 626
PleI	GAGTC	4 cut(s)	626, 626, 632, 644
PpsI	GAGTC	4 cut(s)	626, 626, 632, 644
PpuMI	RGGWCCY	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	845
Psp6I	CCWGG	4 cut(s)	210, 352, 413, 841
PspGI	CCWGG	4 cut(s)	210, 352, 413, 841
PspN4I	GGNNCC	4 cut(s)	114, 412, 534, 847
PspPI	GGNCC	5 cut(s)	42, 107, 134, 589, 845
PspPPI	RGGWCCY	1 cut(s)	845
PstNI	CAGNNNCTG	1 cut(s)	629
RsaI	GTAC	3 cut(s)	23, 430, 825
RsaNI	GTAC	3 cut(s)	22, 429, 824
RseI	CAYNNNNRTG	1 cut(s)	819
SalI	GTCGAC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	557, 584
Sau3AI	GATC	2 cut(s)	448, 726
Sau96I	GGNCC	5 cut(s)	42, 107, 134, 589, 845
SchI	GAGTC	4 cut(s)	626, 627, 632, 644
ScrFI	CCNGG	6 cut(s)	133, 212, 354, 415, 808, 843
SduI	GDGCHC	2 cut(s)	96, 535
SetI	ASST	6 cut(s)	15, 27, 73, 355, 370, 484
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	2 cut(s)	107, 845
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	2 cut(s)	266, 436
SmoI	CTYRAG	2 cut(s)	266, 436
SpeI	ACTAGT	1 cut(s)	521
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	6 cut(s)	232, 330, 401, 465, 558, 827
SspMI	CTAG	2 cut(s)	14, 522
StyD4I	CCNGG	6 cut(s)	131, 210, 352, 413, 806, 841
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	2 cut(s)	27, 484
TaqI	TCGA	2 cut(s)	143, 745
TasI	AATT	6 cut(s)	232, 330, 401, 465, 558, 827
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	6 cut(s)	61, 204, 554, 607, 689, 767
TfiI	GAWTC	3 cut(s)	184, 239, 626
Tru1I	TTAA	2 cut(s)	557, 584
Tru9I	TTAA	2 cut(s)	557, 584
TseI	GCWGC	8 cut(s)	50, 55, 74, 128, 261, 739, 767, 776
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	107, 845
XapI	RAATTY	2 cut(s)	330, 401
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	745
XspI	CTAG	2 cut(s)	14, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.