Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Reverse (-)

5435322 .. 5438147

Gene Structure 2826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAATGATCACATAGTGTTGTACGTCGACCGTCTCATTAGGCCCATGGCCTCGCAGCCGCCGTCCGACGTTAAGGCGGCAGTGGAGGACCCGGCGCCGGAGACCGAGGCCGGACCTTCGTCTAGCTCGTCGTCGGCGGCGGAGGGCGACTGCGGCGAGGAGGAGGAGGAGCCGCTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATACCGTCAACAATTTGGAAACTCCTTGTGCCTGTTGCGGCAGCCTCAAGTATGCTCATAGGAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGCCATCAGCCTTACCAACCTGGCTACACTGCACCTCCTCGTCCACATCCTGATGAAACTACTATTGAAATAGGAGGCTGGACACTTTCTGGGTCTCCTTTGAGTTTGGACGATCCACGCATCTTGTCAATTACGGAAGCAGAACGTCAGTTTCTGGATACTGAATATGATGAGTATGCTGCTTCAAGTAGTAATGGGGCTCCATTTTTCCGATCCGCTGCCTTAATTCTAATGGCCCTTCTTATCTTGCGACATGCATTGAGGGTCACTGATGATGATTCCGGTGATGATACATCTGCTATTTTCTCACTCTTTTTGCTTCGAGCGGCTGGATTTCTTTTGCCCTGCTACATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAAGCTGCAGCATTGGCGGCTACACAAGTTGCTTTTGTTCTTCAATCTGGGCAACATAGGGGCCTGCAGTTTGCGGTAGCATCAGGCCCCCCCGGAACGACTGCACAGCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

283

Amino Acids

30.66

Weight (kDa)

4.55

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	65 - 110	5.7e-12	RING-variant domain
DUF3675	PF12428	116 - 232	2.8e-39	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	2 cut(s)	27, 712
AclWI	GGATC	2 cut(s)	434, 534
AcsI	RAATTY	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	97, 211
AgsI	TTSAA	3 cut(s)	395, 513, 770
AjnI	CCWGG	2 cut(s)	204, 346
AluBI	AGCT	2 cut(s)	126, 731
AluI	AGCT	2 cut(s)	126, 731
Alw26I	GTCTC	3 cut(s)	38, 95, 426
AlwI	GGATC	2 cut(s)	434, 534
AlwNI	CAGNNNCTG	1 cut(s)	481
AoxI	GGCC	7 cut(s)	41, 48, 108, 561, 690, 787, 811
ApeKI	GCWGC	7 cut(s)	55, 255, 506, 545, 706, 731, 734
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 787, 812
AsuC2I	CCSGG	2 cut(s)	92, 819
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	88, 113
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	529
BbvI	GCAGC	7 cut(s)	67, 267, 493, 532, 718, 718, 746
BccI	CCATC	2 cut(s)	339, 701
BceAI	ACGGC	2 cut(s)	46, 201
BciT130I	CCWGG	2 cut(s)	206, 348
BciVI	GTATCC	2 cut(s)	208, 478
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	92, 819
BcoDI	GTCTC	3 cut(s)	38, 95, 426
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	732, 791
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	2 cut(s)	208, 478
Bme1390I	CCNGG	4 cut(s)	92, 206, 348, 819
Bme18I	GGWCC	2 cut(s)	88, 113
BmgT120I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 787, 812
BmiI	GGNNCC	6 cut(s)	90, 96, 171, 528, 788, 814
BmrFI	CCNGG	4 cut(s)	92, 206, 348, 819
BmsI	GCATC	2 cut(s)	456, 815
BoxI	GACNNNNGTC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	92, 819
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	95, 426
BsaJI	CCNNGG	3 cut(s)	45, 105, 817
BsaWI	WCCGGW	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 211
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	206, 348
BseDI	CCNNGG	3 cut(s)	45, 105, 817
BseGI	GGATG	2 cut(s)	214, 373
BseLI	CCNNNNNNNGG	2 cut(s)	97, 211
BseMI	GCAATG	1 cut(s)	304
BseRI	GAGGAG	5 cut(s)	173, 176, 179, 182, 354
BseXI	GCAGC	7 cut(s)	67, 267, 493, 532, 718, 718, 746
BsgI	GTGCAG	2 cut(s)	342, 813
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	7 cut(s)	43, 50, 110, 563, 692, 789, 813
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	5 cut(s)	92, 98, 111, 609, 819
BslI	CCNNNNNNNGG	2 cut(s)	97, 211
BsmAI	GTCTC	3 cut(s)	38, 95, 426
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	7 cut(s)	43, 50, 110, 563, 692, 789, 813
Bso31I	GGTCTC	2 cut(s)	95, 426
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	7, 439, 539
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	7 cut(s)	43, 50, 110, 563, 692, 789, 813
BspLI	GGNNCC	6 cut(s)	90, 96, 171, 528, 788, 814
BspMAI	CTGCAG	2 cut(s)	736, 795
BspPI	GGATC	2 cut(s)	434, 534
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	2 cut(s)	95, 426
BsrBI	CCGCTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	3 cut(s)	45, 105, 817
BssMI	GATC	3 cut(s)	7, 439, 539
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	206, 348
Bst4CI	ACNGT	2 cut(s)	32, 220
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	791
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	214, 373
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	3 cut(s)	10, 442, 542
BstMAI	GTCTC	3 cut(s)	38, 95, 426
BstMBI	GATC	3 cut(s)	7, 439, 539
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 201, 715, 740, 743
BstNI	CCWGG	2 cut(s)	206, 348
BstNSI	RCATGY	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	118
BstSCI	CCNGG	4 cut(s)	90, 204, 346, 817
BstSFI	CTRYAG	2 cut(s)	732, 791
BstV1I	GCAGC	7 cut(s)	67, 267, 493, 532, 718, 718, 746
BsuI	GTATCC	2 cut(s)	208, 478
BsuRI	GGCC	7 cut(s)	43, 50, 110, 563, 692, 789, 813
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	214, 373
BtsI	GCAGTG	2 cut(s)	87, 354
BtsIMutI	CAGTG	3 cut(s)	87, 354, 594
Cac8I	GCNNGC	1 cut(s)	791
CaiI	CAGNNNCTG	1 cut(s)	481
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 787, 812
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	2 cut(s)	46, 581
CviQI	GTAC	1 cut(s)	22
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	3 cut(s)	9, 441, 541
DpnII	GATC	3 cut(s)	7, 439, 539
DraIII	CACNNNGTG	1 cut(s)	16
EciI	GGCGGA	2 cut(s)	155, 203
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	2 cut(s)	95, 426
Eco47I	GGWCC	2 cut(s)	88, 113
EcoO109I	RGGNCCY	3 cut(s)	88, 787, 812
EcoRII	CCWGG	2 cut(s)	204, 346
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	529
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	49, 584
FatI	CATG	2 cut(s)	45, 580
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	27, 712
FokI	GGATG	2 cut(s)	221, 360
FriOI	GRGCYC	1 cut(s)	529
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	7 cut(s)	43, 50, 110, 563, 692, 789, 813
HapII	CCGG	5 cut(s)	92, 98, 111, 609, 819
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	49, 584
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	3 cut(s)	28, 223, 713
HindII	GTYRAC	3 cut(s)	28, 223, 713
HinfI	GANTC	2 cut(s)	178, 605
HpaII	CCGG	5 cut(s)	92, 98, 111, 609, 819
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	4 cut(s)	28, 223, 371, 713
Hpy188I	TCNGA	3 cut(s)	67, 183, 539
Hpy188III	TCNNGA	2 cut(s)	377, 482
Hpy8I	GTNNAC	4 cut(s)	28, 223, 371, 713
Hpy99I	CGWCG	5 cut(s)	29, 71, 133, 136, 714
HpyAV	CCTTC	2 cut(s)	126, 575
HpyCH4III	ACNGT	2 cut(s)	32, 220
HpyCH4IV	ACGT	3 cut(s)	24, 69, 472
HpyCH4V	TGCA	7 cut(s)	297, 359, 584, 706, 734, 793, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 201, 715, 740, 743
HpySE526I	ACGT	3 cut(s)	24, 69, 472
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	49, 584
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 439, 539
LmnI	GCTCC	2 cut(s)	169, 532
Lsp1109I	GCAGC	7 cut(s)	67, 267, 493, 532, 718, 718, 746
LweI	GCATC	2 cut(s)	456, 815
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	3 cut(s)	24, 69, 472
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	3 cut(s)	9, 441, 541
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	3 cut(s)	7, 439, 539
MboII	GAAGA	1 cut(s)	758
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	4 cut(s)	226, 324, 456, 552
Mly113I	GGCGCC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	2 cut(s)	72, 551
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	2 cut(s)	175, 545
MspI	CCGG	5 cut(s)	92, 98, 111, 609, 819
MspR9I	CCNGG	4 cut(s)	92, 206, 348, 819
MvaI	CCWGG	2 cut(s)	206, 348
MwoI	GCNNNNNNNGC	5 cut(s)	153, 201, 715, 740, 743
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	92, 819
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	7, 439, 539
NlaIII	CATG	2 cut(s)	49, 584
NlaIV	GGNNCC	6 cut(s)	90, 96, 171, 528, 788, 814
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 125
PfeI	GAWTC	2 cut(s)	178, 605
PluTI	GGCGCC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	204, 346
PspGI	CCWGG	2 cut(s)	204, 346
PspN4I	GGNNCC	6 cut(s)	90, 96, 171, 528, 788, 814
PspPI	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 787, 812
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	2 cut(s)	736, 795
PstNI	CAGNNNCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	2 cut(s)	26, 711
SaqAI	TTAA	2 cut(s)	72, 551
Sau3AI	GATC	3 cut(s)	7, 439, 539
Sau96I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 787, 812
ScrFI	CCNGG	4 cut(s)	92, 206, 348, 819
SduI	GDGCHC	1 cut(s)	529
SetI	ASST	8 cut(s)	27, 72, 118, 128, 349, 364, 475, 733
SfaNI	GCATC	2 cut(s)	456, 815
SfcI	CTRYAG	2 cut(s)	732, 791
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	2 cut(s)	88, 113
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	226, 324, 456, 552
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	4 cut(s)	90, 204, 346, 817
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	32, 220
TaiI	ACGT	3 cut(s)	27, 72, 475
TaqI	TCGA	3 cut(s)	27, 649, 712
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	4 cut(s)	226, 324, 456, 552
TauI	GCSGC	9 cut(s)	61, 80, 140, 156, 175, 198, 255, 656, 746
TfiI	GAWTC	2 cut(s)	178, 605
Tru1I	TTAA	2 cut(s)	72, 551
Tru9I	TTAA	2 cut(s)	72, 551
TscAI	CASTG	3 cut(s)	87, 361, 601
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	7 cut(s)	55, 255, 506, 545, 706, 731, 734
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	2 cut(s)	17, 396
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	3 cut(s)	87, 361, 601
VpaK11BI	GGWCC	2 cut(s)	88, 113
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	584
XmiI	GTMKAC	2 cut(s)	27, 712
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.