Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

59021640 .. 59025708

Gene Structure 4069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTGATCACATAGTGTTGTACGTCGACCGTCTCATTAGGCCCATGGCCTCGCAGCCGCCGTCCGACGTTAAGGCGGCAGTGGAGGACCCGGCTCCGGAGGCCGAGGCCGGACCTTCGTCTAGCTCGTCGTCGTCGGCGGCGGCGGAGGGCGCTGAGGAGGAGGAGGAGCCGTTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCGTCAACAATTTGGAAACTCCTTGTGCCTGTTGCGGCAGCCTCAAGTATGCTCATAGGAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGCCATCAGCCTTACCAACCAGGCTACACCGCACCTCCTCGTCCACATCCTGATGAAACTACTATTGAAATTGGAGGCTGGACACTTTCTGGGTCTCCTTTGAGTTTGGACGATCCACGCATCTTGTCAATTACGGAAGCAGAACGTCAGTTTCTGGATACTGAATATGATGAGTATGCTGCTTCAAGTAGTAATGGGGCTCCATTTTTCCGATCCGCTGCCTTAATTCTAATGGCCCTTCTTATCTTGCGACATGCATTGAGGGTCACAGATGATGATTCCGGTGATGATACATCTGCTATTTTTTCACTCTTTTTGCTTCGAGCGGCTGGATTTCTTTTGCCCTGCTACATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAAGCTGCAGCATTGGCAGCAACACAAGTTGCTTTTGTTCTTCAATCTGGGCAACATAGGGGTCTGCAGTTTGCGGTAACATCAGGGCCCCCTGGAACGACTGCACAGCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

282

Amino Acids

30.57

Weight (kDa)

4.58

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	65 - 110	5.2e-12	RING-variant domain
DUF3675	PF12428	116 - 232	2.8e-39	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	2 cut(s)	27, 712
AccIII	TCCGGA	1 cut(s)	97
AclWI	GGATC	2 cut(s)	434, 534
AcsI	RAATTY	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	97, 211
AgsI	TTSAA	3 cut(s)	395, 513, 770
AjnI	CCWGG	3 cut(s)	204, 346, 817
AluBI	AGCT	2 cut(s)	126, 731
AluI	AGCT	2 cut(s)	126, 731
Alw26I	GTCTC	2 cut(s)	38, 426
AlwI	GGATC	2 cut(s)	434, 534
AlwNI	CAGNNNCTG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	7 cut(s)	41, 48, 102, 108, 561, 690, 812
ApaI	GGGCCC	1 cut(s)	816
ApeKI	GCWGC	8 cut(s)	55, 255, 506, 545, 706, 731, 734, 743
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 812, 813
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	88, 113
BaeGI	GKGCMC	1 cut(s)	816
BanII	GRGCYC	2 cut(s)	529, 816
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	8 cut(s)	67, 267, 493, 532, 718, 718, 746, 755
BccI	CCATC	2 cut(s)	339, 701
BceAI	ACGGC	3 cut(s)	46, 157, 201
BciT130I	CCWGG	3 cut(s)	206, 348, 819
BciVI	GTATCC	1 cut(s)	478
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	38, 426
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	732, 791
BfoI	RGCGCY	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	478
Bme1390I	CCNGG	4 cut(s)	92, 206, 348, 819
Bme18I	GGWCC	2 cut(s)	88, 113
BmgT120I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 812, 813
BmiI	GGNNCC	6 cut(s)	90, 96, 171, 528, 814, 815
BmrFI	CCNGG	4 cut(s)	92, 206, 348, 819
BmsI	GCATC	1 cut(s)	456
BoxI	GACNNNNGTC	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	45, 105, 817
BsaWI	WCCGGW	2 cut(s)	97, 608
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 211
Bse3DI	GCAATG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	206, 348, 819
BseDI	CCNNGG	3 cut(s)	45, 105, 817
BseGI	GGATG	2 cut(s)	214, 373
BseLI	CCNNNNNNNGG	2 cut(s)	97, 211
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	5 cut(s)	173, 176, 179, 182, 354
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	8 cut(s)	67, 267, 493, 532, 718, 718, 746, 755
BsgI	GTGCAG	1 cut(s)	813
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	7 cut(s)	43, 50, 104, 110, 563, 692, 814
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	4 cut(s)	92, 98, 111, 609
BslI	CCNNNNNNNGG	2 cut(s)	97, 211
BsmAI	GTCTC	2 cut(s)	38, 426
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	7 cut(s)	43, 50, 104, 110, 563, 692, 814
Bso31I	GGTCTC	1 cut(s)	426
Bsp120I	GGGCCC	1 cut(s)	812
Bsp1286I	GDGCHC	2 cut(s)	529, 816
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	7, 439, 539
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	7 cut(s)	43, 50, 104, 110, 563, 692, 814
BspCNI	CTCAG	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	6 cut(s)	90, 96, 171, 528, 814, 815
BspMAI	CTGCAG	2 cut(s)	736, 795
BspPI	GGATC	2 cut(s)	434, 534
BspTNI	GGTCTC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	3 cut(s)	45, 105, 817
BssMI	GATC	3 cut(s)	7, 439, 539
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	206, 348, 819
Bst4CI	ACNGT	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	214, 373
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	10, 442, 542
BstMAI	GTCTC	2 cut(s)	38, 426
BstMBI	GATC	3 cut(s)	7, 439, 539
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 152, 201, 715, 740, 743
BstNI	CCWGG	3 cut(s)	206, 348, 819
BstNSI	RCATGY	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	118
BstSCI	CCNGG	4 cut(s)	90, 204, 346, 817
BstSFI	CTRYAG	2 cut(s)	732, 791
BstSLI	GKGCMC	1 cut(s)	816
BstV1I	GCAGC	8 cut(s)	67, 267, 493, 532, 718, 718, 746, 755
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	7 cut(s)	43, 50, 104, 110, 563, 692, 814
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	214, 373
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	481
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 812, 813
CseI	GACGC	2 cut(s)	208, 698
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	2 cut(s)	46, 581
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	9, 441, 541
DpnII	GATC	3 cut(s)	7, 439, 539
DraIII	CACNNNGTG	1 cut(s)	16
EciI	GGCGGA	2 cut(s)	161, 203
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	529, 816
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	88, 113
EcoO109I	RGGNCCY	3 cut(s)	88, 812, 813
EcoRII	CCWGG	3 cut(s)	204, 346, 817
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	2 cut(s)	529, 816
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	49, 584
FatI	CATG	2 cut(s)	45, 580
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	27, 712
FokI	GGATG	2 cut(s)	221, 360
FriOI	GRGCYC	2 cut(s)	529, 816
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	7 cut(s)	43, 50, 104, 110, 563, 692, 814
HapII	CCGG	4 cut(s)	92, 98, 111, 609
HgaI	GACGC	2 cut(s)	208, 698
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	49, 584
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	3 cut(s)	28, 223, 713
HindII	GTYRAC	3 cut(s)	28, 223, 713
HinfI	GANTC	2 cut(s)	178, 605
HpaII	CCGG	4 cut(s)	92, 98, 111, 609
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	4 cut(s)	28, 223, 371, 713
Hpy188I	TCNGA	3 cut(s)	67, 183, 539
Hpy188III	TCNNGA	3 cut(s)	98, 377, 482
Hpy8I	GTNNAC	4 cut(s)	28, 223, 371, 713
Hpy99I	CGWCG	6 cut(s)	29, 71, 133, 136, 139, 714
HpyAV	CCTTC	2 cut(s)	126, 575
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	24, 69, 472
HpyCH4V	TGCA	6 cut(s)	297, 584, 706, 734, 793, 830
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 152, 201, 715, 740, 743
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	3 cut(s)	24, 69, 472
Hsp92II	CATG	2 cut(s)	49, 584
HspAI	GCGC	1 cut(s)	153
Kpn2I	TCCGGA	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 439, 539
LmnI	GCTCC	3 cut(s)	100, 169, 532
Lsp1109I	GCAGC	8 cut(s)	67, 267, 493, 532, 718, 718, 746, 755
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	3 cut(s)	24, 69, 472
MaeIII	GTNAC	2 cut(s)	592, 802
MalI	GATC	3 cut(s)	9, 441, 541
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	3 cut(s)	7, 439, 539
MboII	GAAGA	1 cut(s)	758
MhlI	GDGCHC	2 cut(s)	529, 816
MluCI	AATT	5 cut(s)	226, 324, 396, 456, 552
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	2 cut(s)	72, 551
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	4 cut(s)	92, 98, 111, 609
MspR9I	CCNGG	4 cut(s)	92, 206, 348, 819
MvaI	CCWGG	3 cut(s)	206, 348, 819
MwoI	GCNNNNNNNGC	6 cut(s)	101, 152, 201, 715, 740, 743
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	7, 439, 539
NlaIII	CATG	2 cut(s)	49, 584
NlaIV	GGNNCC	6 cut(s)	90, 96, 171, 528, 814, 815
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 125
PfeI	GAWTC	2 cut(s)	178, 605
PpuMI	RGGWCCY	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	204, 346, 817
PspGI	CCWGG	3 cut(s)	204, 346, 817
PspN4I	GGNNCC	6 cut(s)	90, 96, 171, 528, 814, 815
PspOMI	GGGCCC	1 cut(s)	812
PspPI	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 812, 813
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	2 cut(s)	736, 795
PstNI	CAGNNNCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	2 cut(s)	26, 711
SaqAI	TTAA	2 cut(s)	72, 551
Sau3AI	GATC	3 cut(s)	7, 439, 539
Sau96I	GGNCC	7 cut(s)	42, 88, 113, 562, 690, 812, 813
ScrFI	CCNGG	4 cut(s)	92, 206, 348, 819
SduI	GDGCHC	2 cut(s)	529, 816
SetI	ASST	7 cut(s)	27, 72, 118, 128, 364, 475, 733
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	2 cut(s)	732, 791
SinI	GGWCC	2 cut(s)	88, 113
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	226, 324, 396, 456, 552
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	4 cut(s)	90, 204, 346, 817
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	3 cut(s)	27, 72, 475
TaqI	TCGA	3 cut(s)	27, 649, 712
TasI	AATT	5 cut(s)	226, 324, 396, 456, 552
TauI	GCSGC	7 cut(s)	61, 80, 143, 146, 198, 255, 656
TfiI	GAWTC	2 cut(s)	178, 605
Tru1I	TTAA	2 cut(s)	72, 551
Tru9I	TTAA	2 cut(s)	72, 551
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	8 cut(s)	55, 255, 506, 545, 706, 731, 734, 743
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	2 cut(s)	88, 113
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	584
XmiI	GTMKAC	2 cut(s)	27, 712
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.