Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Reverse (-)

28068604 .. 28072064

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G274900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGTGACCACCTGGTGTTGTACGTTGACCGTCTCCTCAGGCCCATGGCCGCACAGCAGCCGTCGGAGCCTCCTGAGGTCAGTTCTGTGCCGGAGCCGGAGCCGGAGCCGGCTGGACCCGACCCGGTCCCGGACACTGCCGACCCGTCTTCTAGTTCGTCAGCCGAGGGCGCGGAGGAGGAGGAGCCACTGATTCAGACGGCGGAGTGTCGCATTTGCCAGGATGAGGATAGCATTAGCAATTTGGAATCTCCTTGTGCCTGTTGTGGCAGCCTCAAGTATGCTCATAGAAAGTGCGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGTCATCAGACTTACCAACCTGGCTATACTGCACCTCCTCGTCCACCATCTGATGAAACTACTATTGAAATTGGTGGAGGCTGGACACTTTCTGGCACTCCTTTGAGTTTGGACGATCCACGTATCCTGTCAATTACAGAGGCAGAGCGTCAGTATCTGGATACTGAATATGATGAATATTCTGCTTCAAGCAGTAGTGGAGCTCCATTCTTCCGTTCAGCAGCCTTAATTTTAATGGCCCTTCTGATCTTGCGGCATGCACTGAGAGTCACAGATTCCGACAATGGGGATGACACGTCTGCTATTTTCTCTCTTTTCTTGCTTCGAGCGGCTGGATTTCTTTTGCCTGCTATATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAGGCTGCAGCATTGGCAGCAACACAAGTTGCTTTTGTTCTTCAATCTGGACAACATATGGGTCTACAATTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

274

Amino Acids

30.15

Weight (kDa)

4.45

Isoelectric Point (pI)

68.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	729, 807
AccII	CGCG	1 cut(s)	173
AciI	CCGC	5 cut(s)	51, 173, 203, 595, 671
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	130, 226, 627
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	410, 531, 787
AjiI	CACGTC	1 cut(s)	639
AjnI	CCWGG	3 cut(s)	12, 219, 361
AluBI	AGCT	1 cut(s)	545
AluI	AGCT	1 cut(s)	545
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	4 cut(s)	41, 48, 579, 707
ApeKI	GCWGC	7 cut(s)	58, 270, 563, 723, 748, 751, 760
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	5 cut(s)	42, 116, 127, 580, 707
AsuC2I	CCSGG	2 cut(s)	125, 131
AvaII	GGWCC	2 cut(s)	116, 127
AxyI	CCTNAGG	2 cut(s)	38, 75
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	7 cut(s)	70, 282, 575, 735, 735, 763, 772
BccI	CCATC	2 cut(s)	397, 718
BceAI	ACGGC	2 cut(s)	46, 216
BciT130I	CCWGG	3 cut(s)	14, 221, 363
BciVI	GTATCC	2 cut(s)	476, 496
BcnI	CCSGG	2 cut(s)	125, 131
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	749
BfuI	GTATCC	2 cut(s)	476, 496
Bme1390I	CCNGG	5 cut(s)	14, 125, 131, 221, 363
Bme18I	GGWCC	2 cut(s)	116, 127
BmgBI	CACGTC	1 cut(s)	639
BmgT120I	GGNCC	5 cut(s)	42, 116, 127, 580, 707
BmiI	GGNNCC	7 cut(s)	69, 96, 102, 108, 118, 129, 186
BmrFI	CCNGG	5 cut(s)	14, 125, 131, 221, 363
BpiI	GAAGAC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	125, 131
BsaAI	YACGTR	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	45, 165
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 226, 627
Bse118I	RCCGGY	1 cut(s)	109
Bse21I	CCTNAGG	2 cut(s)	38, 75
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	3 cut(s)	14, 221, 363
BseDI	CCNNGG	2 cut(s)	45, 165
BseGI	GGATG	2 cut(s)	229, 637
BseLI	CCNNNNNNNGG	3 cut(s)	130, 226, 627
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	52, 66, 596
BseRI	GAGGAG	5 cut(s)	26, 191, 194, 197, 369
BseXI	GCAGC	7 cut(s)	70, 282, 575, 735, 735, 763, 772
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	4 cut(s)	43, 50, 581, 709
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	6 cut(s)	92, 98, 104, 110, 125, 131
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	130, 226, 627
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	4 cut(s)	43, 50, 581, 709
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	457, 588
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	5 cut(s)	51, 173, 203, 595, 671
BspANI	GGCC	4 cut(s)	43, 50, 581, 709
BspCNI	CTCAG	3 cut(s)	51, 67, 597
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	7 cut(s)	69, 96, 102, 108, 118, 129, 186
BspMAI	CTGCAG	1 cut(s)	753
BspPI	GGATC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	45, 165
BssMI	GATC	2 cut(s)	457, 588
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	14, 221, 363
Bst4CI	ACNGT	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	111, 600, 690
BstDEI	CTNAG	3 cut(s)	38, 75, 605
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	229, 637
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	460, 591
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	457, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 170, 732, 757, 760
BstNI	CCWGG	3 cut(s)	14, 221, 363
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	5 cut(s)	12, 123, 129, 219, 361
BstSFI	CTRYAG	1 cut(s)	749
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	7 cut(s)	70, 282, 575, 735, 735, 763, 772
BstV2I	GAAGAC	1 cut(s)	141
Bsu36I	CCTNAGG	2 cut(s)	38, 75
BsuI	GTATCC	2 cut(s)	476, 496
BsuRI	GGCC	4 cut(s)	43, 50, 581, 709
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	229, 637
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	135, 188, 602
Cac8I	GCNNGC	3 cut(s)	111, 600, 690
CaiI	CAGNNNCTG	1 cut(s)	499
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	5 cut(s)	42, 116, 127, 580, 707
CseI	GACGC	2 cut(s)	479, 715
CsiI	ACCWGGT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	46, 599
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	3 cut(s)	38, 75, 605
DpnI	GATC	2 cut(s)	459, 590
DpnII	GATC	2 cut(s)	457, 588
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	116, 127
Eco53kI	GAGCTC	1 cut(s)	545
Eco81I	CCTNAGG	2 cut(s)	38, 75
EcoICRI	GAGCTC	1 cut(s)	545
EcoRII	CCWGG	3 cut(s)	12, 219, 361
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	49, 602
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	2 cut(s)	45, 598
FauNDI	CATATG	1 cut(s)	800
FblI	GTMKAC	2 cut(s)	729, 807
FokI	GGATG	2 cut(s)	236, 644
FriOI	GRGCYC	1 cut(s)	547
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	172
HaeIII	GGCC	4 cut(s)	43, 50, 581, 709
HapII	CCGG	6 cut(s)	92, 98, 104, 110, 125, 131
HgaI	GACGC	2 cut(s)	479, 715
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	49, 602
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	2 cut(s)	28, 730
HindII	GTYRAC	2 cut(s)	28, 730
HinfI	GANTC	4 cut(s)	193, 248, 609, 617
HpaII	CCGG	6 cut(s)	92, 98, 104, 110, 125, 131
Hpy166II	GTNNAC	4 cut(s)	28, 386, 730, 808
Hpy188I	TCNGA	6 cut(s)	67, 198, 351, 394, 588, 622
Hpy188III	TCNNGA	3 cut(s)	74, 500, 791
Hpy8I	GTNNAC	4 cut(s)	28, 386, 730, 808
Hpy99I	CGWCG	2 cut(s)	67, 731
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	24, 463, 638
HpyCH4V	TGCA	6 cut(s)	312, 374, 602, 723, 751, 817
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 170, 732, 757, 760
HpyF3I	CTNAG	3 cut(s)	38, 75, 605
HpySE526I	ACGT	3 cut(s)	24, 463, 638
Hsp92II	CATG	2 cut(s)	49, 602
HspAI	GCGC	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	457, 588
LmnI	GCTCC	7 cut(s)	67, 94, 100, 106, 184, 542, 550
Lsp1109I	GCAGC	7 cut(s)	70, 282, 575, 735, 735, 763, 772
MabI	ACCWGGT	1 cut(s)	12
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	3 cut(s)	24, 463, 638
MaeIII	GTNAC	2 cut(s)	5, 610
MalI	GATC	2 cut(s)	459, 590
MbiI	CCGCTC	1 cut(s)	671
MboI	GATC	2 cut(s)	457, 588
MboII	GAAGA	3 cut(s)	141, 544, 775
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	6 cut(s)	241, 339, 411, 474, 570, 811
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	2 cut(s)	45, 645
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	2 cut(s)	569, 575
MspI	CCGG	6 cut(s)	92, 98, 104, 110, 125, 131
MspR9I	CCNGG	5 cut(s)	14, 125, 131, 221, 363
MvaI	CCWGG	3 cut(s)	14, 221, 363
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	67, 170, 732, 757, 760
NaeI	GCCGGC	1 cut(s)	111
NciI	CCSGG	2 cut(s)	125, 131
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	2 cut(s)	457, 588
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	49, 602
NlaIV	GGNNCC	7 cut(s)	69, 96, 102, 108, 118, 129, 186
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	5, 610
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	193, 248, 617
PflFI	GACNNNGTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	129
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
Ppu21I	YACGTR	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	12, 219, 361
PspGI	CCWGG	3 cut(s)	12, 219, 361
PspN4I	GGNNCC	7 cut(s)	69, 96, 102, 108, 118, 129, 186
PspPI	GGNCC	5 cut(s)	42, 116, 127, 580, 707
PstI	CTGCAG	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	569, 575
Sau3AI	GATC	2 cut(s)	457, 588
Sau96I	GGNCC	5 cut(s)	42, 116, 127, 580, 707
SchI	GAGTC	1 cut(s)	618
ScrFI	CCNGG	5 cut(s)	14, 125, 131, 221, 363
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	8 cut(s)	15, 27, 81, 364, 379, 466, 547, 641
SexAI	ACCWGGT	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	749
SinI	GGWCC	2 cut(s)	116, 127
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	6 cut(s)	241, 339, 411, 474, 570, 811
SsiI	CCGC	5 cut(s)	51, 173, 203, 595, 671
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	5 cut(s)	12, 123, 129, 219, 361
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	3 cut(s)	27, 466, 641
TaqI	TCGA	2 cut(s)	667, 729
TasI	AATT	6 cut(s)	241, 339, 411, 474, 570, 811
TauI	GCSGC	3 cut(s)	53, 598, 674
TfiI	GAWTC	3 cut(s)	193, 248, 617
Tru1I	TTAA	2 cut(s)	569, 575
Tru9I	TTAA	2 cut(s)	569, 575
TscAI	CASTG	3 cut(s)	142, 195, 609
TseFI	GTSAC	2 cut(s)	5, 610
TseI	GCWGC	7 cut(s)	58, 270, 563, 723, 748, 751, 760
Tsp45I	GTSAC	2 cut(s)	5, 610
TspDTI	ATGAA	2 cut(s)	411, 531
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	3 cut(s)	142, 195, 609
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	116, 127
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	2 cut(s)	729, 807
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.