Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

68041667 .. 68042563

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCTTATTATCTTTCGGTTATGGATGTTTCCTACAGAGGAGGCTGGACACTTTCTGGGTCTCCTTTGAGTTTGGACGATCCACGCATCTTGTCAATTACGGAAGCAGAACGTCAGTTTCTGGATACTGAATATGATGAGTATGCTGCTTCAAGTAGTAATGGGGCTCCATTTTTCCGATCCGCTGCCTTAATTCTAATGGCCCTTCTTATCTTGCGACATGCATTGAGGGTGACAGATGATGATTCCGGTGATGATACATCTGCTATTTTCTCACTCTTTTTGCTTCGAGCGGCTGGATTTCTTTTGCCCTGCTACATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAAGCTGCAGCATTGGCAGCAACACAAGTTGCTTTTGTTCTTCAATCTGGGCAACATAGGGGTCTGCAGTTTGCGGTAGCATCAGGGCCCCCCGGAACGACTGCACAGCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

162

Amino Acids

17.67

Weight (kDa)

4.85

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3675	PF12428	8 - 112	7.6e-36	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	3 cut(s)	183, 293, 440
AclWI	GGATC	2 cut(s)	74, 174
AgsI	TTSAA	2 cut(s)	153, 410
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	74, 174
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	3 cut(s)	201, 330, 452
ApaI	GGGCCC	1 cut(s)	456
ApeKI	GCWGC	6 cut(s)	146, 185, 346, 371, 374, 383
AspS9I	GGNCC	4 cut(s)	202, 330, 452, 453
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	244, 263
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	2 cut(s)	169, 456
BbvI	GCAGC	6 cut(s)	133, 172, 358, 358, 386, 395
BccI	CCATC	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	3 cut(s)	34, 372, 431
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	7 cut(s)	147, 186, 294, 347, 372, 375, 384
BlsI	GCNGC	7 cut(s)	148, 187, 295, 348, 373, 376, 385
Bme1390I	CCNGG	1 cut(s)	459
BmgT120I	GGNCC	4 cut(s)	202, 330, 452, 453
BmiI	GGNNCC	3 cut(s)	168, 454, 455
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	96, 455
BpuMI	CCSGG	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	6 cut(s)	133, 172, 358, 358, 386, 395
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	203, 332, 454
BsiSI	CCGG	2 cut(s)	249, 459
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	203, 332, 454
Bso31I	GGTCTC	1 cut(s)	66
Bsp120I	GGGCCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	169, 456
Bsp143I	GATC	2 cut(s)	79, 179
BspACI	CCGC	3 cut(s)	183, 293, 440
BspANI	GGCC	3 cut(s)	203, 332, 454
BspLI	GGNNCC	3 cut(s)	168, 454, 455
BspMAI	CTGCAG	2 cut(s)	376, 435
BspPI	GGATC	2 cut(s)	74, 174
BspTNI	GGTCTC	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	79, 179
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	82, 182
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	79, 179
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 380, 383
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	3 cut(s)	34, 372, 431
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	6 cut(s)	133, 172, 358, 358, 386, 395
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	203, 332, 454
BtsCI	GGATG	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	202, 330, 452, 453
CseI	GACGC	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	8 cut(s)	45, 167, 203, 296, 326, 332, 371, 454
CviKI_1	RGCY	8 cut(s)	45, 167, 203, 296, 326, 332, 371, 454
DpnI	GATC	2 cut(s)	81, 181
DpnII	GATC	2 cut(s)	79, 179
Eco24I	GRGCYC	2 cut(s)	169, 456
Eco31I	GGTCTC	1 cut(s)	66
EcoO109I	RGGNCCY	2 cut(s)	452, 453
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	169, 456
FaeI	CATG	1 cut(s)	224
FaiI	YATR	6 cut(s)	23, 135, 144, 222, 323, 423
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	7 cut(s)	147, 186, 294, 347, 372, 375, 384
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	2 cut(s)	169, 456
Fsp4HI	GCNGC	7 cut(s)	147, 186, 294, 347, 372, 375, 384
GluI	GCNGC	7 cut(s)	147, 186, 294, 347, 372, 375, 384
HaeIII	GGCC	3 cut(s)	203, 332, 454
HapII	CCGG	2 cut(s)	249, 459
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	249, 459
HphI	GGTGA	2 cut(s)	244, 263
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	5 cut(s)	224, 346, 374, 433, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 380, 383
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	79, 179
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	6 cut(s)	133, 172, 358, 358, 386, 395
LweI	GCATC	2 cut(s)	96, 455
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	81, 181
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	2 cut(s)	79, 179
MboII	GAAGA	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	169, 456
MluCI	AATT	2 cut(s)	96, 192
MnlI	CCTC	3 cut(s)	32, 35, 222
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	249, 459
MspR9I	CCNGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	355, 380, 383
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	79, 179
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	3 cut(s)	168, 454, 455
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	148, 187, 295, 348, 373, 376, 385
PspN4I	GGNNCC	3 cut(s)	168, 454, 455
PspOMI	GGGCCC	1 cut(s)	452
PspPI	GGNCC	4 cut(s)	202, 330, 452, 453
PstI	CTGCAG	2 cut(s)	376, 435
PstNI	CAGNNNCTG	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	7 cut(s)	147, 186, 294, 347, 372, 375, 384
Sau3AI	GATC	2 cut(s)	79, 179
Sau96I	GGNCC	4 cut(s)	202, 330, 452, 453
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	2 cut(s)	169, 456
SetI	ASST	2 cut(s)	115, 373
SfaNI	GCATC	2 cut(s)	96, 455
SfcI	CTRYAG	3 cut(s)	34, 372, 431
Sse9I	AATT	2 cut(s)	96, 192
SsiI	CCGC	3 cut(s)	183, 293, 440
StyD4I	CCNGG	1 cut(s)	457
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	289, 352
TasI	AATT	2 cut(s)	96, 192
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	6 cut(s)	146, 185, 346, 371, 374, 383
Tsp45I	GTSAC	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	116
XceI	RCATGY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.