Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

30523846 .. 30527235

Gene Structure 3390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31340.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTTTCGCAGCCGCCGTCCGAGCCTGCAGCTGAGGTGAAGCCTGATTTGCCGGAGAAGGAGGACGCCGCGGCGGAGACCGAGGCTGGATGTTCTAGCTCGGCGGCGGAGGGTGTGGAGGAGGAGGAGGAGCCGCTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCGTCAGCAATCTGGAAACTCCTTGCGCCTGTTGCGGCAGCCTCAAGTATGCTCATAGGAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGCCATCAGACTTACCAACCTGGCTACACTGCACCTCCTCGTCCACATCCTGATGAAACTACAATTGAAATAGGAGGCTGGACACTCTCTGGGGCTCCTTTGAGTCTGGACGATCCACGCATCTTATCAATTACGGAAGCAGATCGTCAGTTTCTGGATACTGAATATGATGAGTACGCTGCTTCAAACAATAGTGGGGCTCCATTTTTCCGATCCGCTGCCTTAATTCTAATGGCGCTTCTTATCTTGCGACATGCATTGAGGGTCACAGATAATGATTCCGATGATGACACATCTGCTATTTTCTCACTCTTTTTGCTTCGAGCGGCTGGATTTCTTCTGCCCTGCTACATTATGGCGTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAAGCCGCGGCATTGGCAGCTACACAAGTTGCTTTTGTTCTTCAATCTGGGCAACATAGGGGTTTGCAATTTGCGGTAGCATCAGGGCCCCCTGGAGCGACTGCACAGCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

270

Amino Acids

29.17

Weight (kDa)

4.47

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	67 - 112	4.6e-12	RING-variant domain
DUF3675	PF12428	118 - 234	5.5e-40	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	673
AccII	CGCG	2 cut(s)	71, 695
AclWI	GGATC	2 cut(s)	395, 495
AcsI	RAATTY	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	356, 474, 731
AjnI	CCWGG	3 cut(s)	165, 307, 778
AluBI	AGCT	3 cut(s)	32, 99, 707
AluI	AGCT	3 cut(s)	32, 99, 707
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	395, 495
AlwNI	CAGNNNCTG	1 cut(s)	442
AoxI	GGCC	2 cut(s)	651, 773
ApaI	GGGCCC	1 cut(s)	777
ApeKI	GCWGC	7 cut(s)	10, 29, 216, 467, 506, 667, 704
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	2 cut(s)	206, 526
AspS9I	GGNCC	3 cut(s)	651, 773, 774
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	777
BanII	GRGCYC	3 cut(s)	385, 490, 777
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	7 cut(s)	22, 41, 228, 454, 493, 679, 716
BccI	CCATC	2 cut(s)	300, 662
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	167, 309, 780
BciVI	GTATCC	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	167, 309, 780
BmgT120I	GGNCC	3 cut(s)	651, 773, 774
BmiI	GGNNCC	5 cut(s)	132, 384, 489, 775, 776
BmrFI	CCNGG	3 cut(s)	167, 309, 780
BmsI	GCATC	2 cut(s)	417, 776
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	69, 81, 693, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	167, 309, 780
BseDI	CCNNGG	4 cut(s)	69, 81, 693, 778
BseGI	GGATG	3 cut(s)	95, 175, 334
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	5 cut(s)	134, 137, 140, 143, 315
BseSI	GKGCMC	1 cut(s)	777
BseXI	GCAGC	7 cut(s)	22, 41, 228, 454, 493, 679, 716
BsgI	GTGCAG	2 cut(s)	303, 774
Bsh1236I	CGCG	2 cut(s)	71, 695
BshFI	GGCC	2 cut(s)	653, 775
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	653, 775
Bso31I	GGTCTC	1 cut(s)	71
Bsp120I	GGGCCC	1 cut(s)	773
Bsp1286I	GDGCHC	3 cut(s)	385, 490, 777
Bsp143I	GATC	3 cut(s)	400, 430, 500
BspANI	GGCC	2 cut(s)	653, 775
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	2 cut(s)	71, 695
BspLI	GGNNCC	5 cut(s)	132, 384, 489, 775, 776
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	395, 495
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	69, 81, 693, 778
BssMI	GATC	3 cut(s)	400, 430, 500
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	3 cut(s)	167, 309, 780
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	2 cut(s)	69, 693
BstF5I	GGATG	3 cut(s)	95, 175, 334
BstFNI	CGCG	2 cut(s)	71, 695
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	206, 526
BstKTI	GATC	3 cut(s)	403, 433, 503
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	400, 430, 500
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 49, 162, 210, 676, 701, 704
BstNI	CCWGG	3 cut(s)	167, 309, 780
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	3 cut(s)	165, 307, 778
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	777
BstUI	CGCG	2 cut(s)	71, 695
BstV1I	GCAGC	7 cut(s)	22, 41, 228, 454, 493, 679, 716
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	653, 775
BtgI	CCRYGG	2 cut(s)	69, 693
BtsCI	GGATG	3 cut(s)	95, 175, 334
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	2 cut(s)	206, 526
Cfr13I	GGNCC	3 cut(s)	651, 773, 774
Cfr42I	CCGCGG	2 cut(s)	72, 696
CseI	GACGC	3 cut(s)	74, 169, 659
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	402, 432, 502
DpnII	GATC	3 cut(s)	400, 430, 500
EciI	GGCGGA	3 cut(s)	89, 122, 164
Eco24I	GRGCYC	3 cut(s)	385, 490, 777
Eco31I	GGTCTC	1 cut(s)	71
EcoO109I	RGGNCCY	2 cut(s)	773, 774
EcoRII	CCWGG	3 cut(s)	165, 307, 778
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	3 cut(s)	385, 490, 777
FaeI	CATG	1 cut(s)	545
FaiI	YATR	7 cut(s)	228, 234, 275, 456, 543, 644, 744
FatI	CATG	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	673
FokI	GGATG	3 cut(s)	102, 182, 321
FriOI	GRGCYC	3 cut(s)	385, 490, 777
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	2 cut(s)	205, 525
GsuI	CTGGAG	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	653, 775
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	3 cut(s)	74, 169, 659
HhaI	GCGC	2 cut(s)	206, 526
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	2 cut(s)	204, 524
HinP1I	GCGC	2 cut(s)	204, 524
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HinfI	GANTC	3 cut(s)	139, 391, 566
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	332, 674
Hpy188I	TCNGA	5 cut(s)	22, 144, 297, 500, 571
Hpy188III	TCNNGA	4 cut(s)	191, 338, 395, 443
Hpy8I	GTNNAC	2 cut(s)	332, 674
Hpy99I	CGWCG	1 cut(s)	675
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	29, 258, 320, 545, 667, 754, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 49, 162, 210, 676, 701, 704
HpyF3I	CTNAG	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	2 cut(s)	204, 524
KspI	CCGCGG	2 cut(s)	72, 696
Kzo9I	GATC	3 cut(s)	400, 430, 500
LmnI	GCTCC	4 cut(s)	130, 388, 493, 782
Lsp1109I	GCAGC	7 cut(s)	22, 41, 228, 454, 493, 679, 716
LweI	GCATC	2 cut(s)	417, 776
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	3 cut(s)	402, 432, 502
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	3 cut(s)	400, 430, 500
MboII	GAAGA	2 cut(s)	617, 719
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	3 cut(s)	385, 490, 777
MluCI	AATT	5 cut(s)	285, 351, 417, 513, 755
MlyI	GAGTC	1 cut(s)	400
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	5 cut(s)	32, 71, 136, 506, 695
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	3 cut(s)	167, 309, 780
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	3 cut(s)	167, 309, 780
MvnI	CGCG	2 cut(s)	71, 695
MwoI	GCNNNNNNNGC	7 cut(s)	22, 49, 162, 210, 676, 701, 704
NdeII	GATC	3 cut(s)	400, 430, 500
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	5 cut(s)	132, 384, 489, 775, 776
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	139, 566
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
Psp6I	CCWGG	3 cut(s)	165, 307, 778
PspGI	CCWGG	3 cut(s)	165, 307, 778
PspN4I	GGNNCC	5 cut(s)	132, 384, 489, 775, 776
PspOMI	GGGCCC	1 cut(s)	773
PspPI	GGNCC	3 cut(s)	651, 773, 774
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	339
SacII	CCGCGG	2 cut(s)	72, 696
SalI	GTCGAC	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	400, 430, 500
Sau96I	GGNCC	3 cut(s)	651, 773, 774
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	3 cut(s)	167, 309, 780
SduI	GDGCHC	3 cut(s)	385, 490, 777
SetI	ASST	6 cut(s)	34, 39, 101, 310, 325, 709
SfaNI	GCATC	2 cut(s)	417, 776
SfcI	CTRYAG	1 cut(s)	27
Sfr303I	CCGCGG	2 cut(s)	72, 696
SgrBI	CCGCGG	2 cut(s)	72, 696
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	5 cut(s)	285, 351, 417, 513, 755
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	165, 307, 778
TaqI	TCGA	2 cut(s)	610, 673
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	5 cut(s)	285, 351, 417, 513, 755
TfiI	GAWTC	2 cut(s)	139, 566
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	7 cut(s)	10, 29, 216, 467, 506, 667, 704
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	673
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.