Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

5100615 .. 5104562

Gene Structure 3948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1072700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGCGACCACCTAGTTTTGTACGTTGACCGTCTCCTTCGGCCCATGGCAGCGCAGCCGCCTTCCCAGCCTGCTGCTGAGGCCGGTTATGTGCCCGAGCCGGCTGGACCGGAGCCGGAGCGGGATGCTGCCGGGCCGTCTTCGAGTTCGTCGGCGGAGGAGGACGAACAGCTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCATTAGCAATTTGGAATCTCCTTGCGCCTGCTGTGGCAGCCTCAAGTATGCTCATAGAAAATGCGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGTCATCAGCCTTACCAACCTGGCTATACCGCACCTCCTCGTCCGCCATCTGATGAAACTACTATTGAATTTGGTGGTGCCTGGACACTTTCTGGCACTCCCTTGAGTTTGGATGATCCACGCATTTTGTCAATTGCAGAGGCAGAACGTCAGTTTATGGATACTGAGTATGATGATTATTCTTCAACTAGTAGTGGAGCTCCATTCTTCCGTTCAGCGGCCTTAATTTTAATGGGCCTTCTAATCTTGCGGCATGCAATGAGAGTCTCAGATTCTGACTCCGACTCTGGGGATGACTCATCTGCTATTTTCTCTCTTTTCTTGCTTAGAGCGGCTGGCTTTCTTTTGCCCTGCTATATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAGGCCGCAGCAATGGCAGCAACCCAAGTTGCTTTTGTTCTTCAATCCGGGCAACATAGGGGTGTACAATTTGCGGTAGCGCCAGGACCCAATGGAAGTCCACATCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

283

Amino Acids

30.6

Weight (kDa)

4.63

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	64 - 109	5.1e-12	RING-variant domain
DUF3675	PF12428	115 - 233	8.1e-36	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccBSI	CCGCTC	2 cut(s)	121, 656
AccI	GTMKAC	1 cut(s)	715
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	321, 392
AfaI	GTAC	2 cut(s)	23, 795
AfiI	CCNNNNNNNGG	3 cut(s)	208, 541, 612
AgsI	TTSAA	3 cut(s)	392, 510, 773
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	4 cut(s)	201, 343, 404, 811
AluBI	AGCT	2 cut(s)	172, 524
AluI	AGCT	2 cut(s)	172, 524
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	2 cut(s)	38, 595
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	7 cut(s)	41, 81, 134, 543, 559, 693, 732
ApeKI	GCWGC	8 cut(s)	50, 55, 74, 128, 252, 709, 737, 746
ApoI	RAATTY	2 cut(s)	321, 392
AspLEI	GCGC	3 cut(s)	55, 242, 811
AspS9I	GGNCC	6 cut(s)	42, 107, 134, 559, 693, 815
AsuC2I	CCSGG	2 cut(s)	133, 778
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	107, 815
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	8 cut(s)	61, 62, 67, 115, 264, 721, 749, 758
BccI	CCATC	2 cut(s)	379, 704
BceAI	ACGGC	2 cut(s)	121, 198
BciT130I	CCWGG	4 cut(s)	203, 345, 406, 813
BciVI	GTATCC	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	133, 778
BcoDI	GTCTC	2 cut(s)	38, 595
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	2 cut(s)	14, 513
BfoI	RGCGCY	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	478
Bme1390I	CCNGG	6 cut(s)	133, 203, 345, 406, 778, 813
Bme18I	GGWCC	2 cut(s)	107, 815
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	6 cut(s)	42, 107, 134, 559, 693, 815
BmiI	GGNNCC	3 cut(s)	114, 403, 817
BmrFI	CCNGG	6 cut(s)	133, 203, 345, 406, 778, 813
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	242, 448
BpuMI	CCSGG	2 cut(s)	133, 778
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 541, 612
Bse118I	RCCGGY	2 cut(s)	83, 100
Bse3DI	GCAATG	3 cut(s)	301, 588, 747
BseBI	CCWGG	4 cut(s)	203, 345, 406, 813
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	4 cut(s)	130, 211, 442, 622
BseLI	CCNNNNNNNGG	3 cut(s)	208, 541, 612
BseMI	GCAATG	3 cut(s)	301, 588, 747
BseMII	CTCAG	3 cut(s)	69, 480, 606
BseRI	GAGGAG	2 cut(s)	173, 351
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	8 cut(s)	61, 62, 67, 115, 264, 721, 749, 758
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	7 cut(s)	43, 83, 136, 545, 561, 695, 734
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	6 cut(s)	84, 101, 110, 116, 132, 777
BslI	CCNNNNNNNGG	3 cut(s)	208, 541, 612
BsmAI	GTCTC	2 cut(s)	38, 595
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	7 cut(s)	43, 83, 136, 545, 561, 695, 734
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	96, 526
Bsp1407I	TGTACA	1 cut(s)	793
Bsp143I	GATC	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	7 cut(s)	43, 83, 136, 545, 561, 695, 734
BspCNI	CTCAG	3 cut(s)	70, 481, 605
BspLI	GGNNCC	3 cut(s)	114, 403, 817
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	401
BsrBI	CCGCTC	2 cut(s)	121, 656
BsrDI	GCAATG	3 cut(s)	301, 588, 747
BsrFI	RCCGGY	2 cut(s)	83, 100
BsrGI	TGTACA	1 cut(s)	793
BssAI	RCCGGY	2 cut(s)	83, 100
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	4 cut(s)	203, 345, 406, 813
Bst4CI	ACNGT	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	793
BstC8I	GCNNGC	5 cut(s)	72, 102, 244, 579, 661
BstDEI	CTNAG	4 cut(s)	78, 489, 592, 650
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	4 cut(s)	130, 211, 442, 622
BstH2I	RGCGCY	1 cut(s)	812
BstHHI	GCGC	3 cut(s)	55, 242, 811
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	38, 595
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 80, 198, 252, 718, 743, 746
BstNI	CCWGG	4 cut(s)	203, 345, 406, 813
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	6 cut(s)	131, 201, 343, 404, 776, 811
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	8 cut(s)	61, 62, 67, 115, 264, 721, 749, 758
BstV2I	GAAGAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	7 cut(s)	43, 83, 136, 545, 561, 695, 734
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	130, 211, 442, 622
Cac8I	GCNNGC	5 cut(s)	72, 102, 244, 579, 661
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	3 cut(s)	55, 242, 811
Cfr10I	RCCGGY	2 cut(s)	83, 100
Cfr13I	GGNCC	6 cut(s)	42, 107, 134, 559, 693, 815
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	22, 794
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	2 cut(s)	46, 578
CviQI	GTAC	2 cut(s)	22, 794
DdeI	CTNAG	4 cut(s)	78, 489, 592, 650
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
EciI	GGCGGA	3 cut(s)	170, 200, 357
Ecl136II	GAGCTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	107, 815
Eco53kI	GAGCTC	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	815
EcoRII	CCWGG	4 cut(s)	201, 343, 404, 811
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	49, 581
FatI	CATG	2 cut(s)	45, 577
FauI	CCCGC	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	715
FokI	GGATG	4 cut(s)	137, 218, 449, 629
FriOI	GRGCYC	1 cut(s)	526
FspBI	CTAG	2 cut(s)	14, 513
GlaI	GCGC	3 cut(s)	54, 241, 810
GsaI	CCCAGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	812
HaeIII	GGCC	7 cut(s)	43, 83, 136, 545, 561, 695, 734
HapII	CCGG	6 cut(s)	84, 101, 110, 116, 132, 777
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	3 cut(s)	55, 242, 811
Hin1II	CATG	2 cut(s)	49, 581
Hin6I	GCGC	3 cut(s)	53, 240, 809
HinP1I	GCGC	3 cut(s)	53, 240, 809
HincII	GTYRAC	2 cut(s)	28, 716
HindII	GTYRAC	2 cut(s)	28, 716
HinfI	GANTC	7 cut(s)	175, 230, 588, 596, 602, 608, 620
HpaII	CCGG	6 cut(s)	84, 101, 110, 116, 132, 777
Hpy166II	GTNNAC	4 cut(s)	28, 716, 794, 830
Hpy188I	TCNGA	5 cut(s)	180, 376, 595, 601, 607
Hpy188III	TCNNGA	1 cut(s)	836
Hpy8I	GTNNAC	4 cut(s)	28, 716, 794, 830
Hpy99I	CGWCG	2 cut(s)	154, 717
HpyAV	CCTTC	3 cut(s)	47, 72, 572
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	24, 472
HpyCH4V	TGCA	4 cut(s)	294, 461, 581, 709
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 80, 198, 252, 718, 743, 746
HpyF3I	CTNAG	4 cut(s)	78, 489, 592, 650
HpySE526I	ACGT	2 cut(s)	24, 472
Hsp92II	CATG	2 cut(s)	49, 581
HspAI	GCGC	3 cut(s)	53, 240, 809
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	4 cut(s)	112, 118, 521, 529
Lsp1109I	GCAGC	8 cut(s)	61, 62, 67, 115, 264, 721, 749, 758
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	14, 513
MaeII	ACGT	2 cut(s)	24, 472
MalI	GATC	1 cut(s)	441
MbiI	CCGCTC	2 cut(s)	121, 656
MboI	GATC	1 cut(s)	439
MboII	GAAGA	4 cut(s)	132, 498, 523, 761
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	96, 526
MluCI	AATT	6 cut(s)	223, 321, 392, 456, 549, 797
MlyI	GAGTC	4 cut(s)	596, 597, 602, 614
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	9 cut(s)	73, 151, 154, 202, 266, 369, 372, 457, 724
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	2 cut(s)	548, 554
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	2 cut(s)	172, 542
MspI	CCGG	6 cut(s)	84, 101, 110, 116, 132, 777
MspR9I	CCNGG	6 cut(s)	133, 203, 345, 406, 778, 813
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	4 cut(s)	203, 345, 406, 813
MwoI	GCNNNNNNNGC	7 cut(s)	67, 80, 198, 252, 718, 743, 746
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	133, 778
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	439
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	49, 581
NlaIV	GGNNCC	3 cut(s)	114, 403, 817
NspI	RCATGY	1 cut(s)	581
PaeI	GCATGC	1 cut(s)	581
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	175, 230, 596
PleI	GAGTC	4 cut(s)	596, 596, 602, 614
PpsI	GAGTC	4 cut(s)	596, 596, 602, 614
PpuMI	RGGWCCY	1 cut(s)	815
Psp124BI	GAGCTC	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	815
Psp6I	CCWGG	4 cut(s)	201, 343, 404, 811
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	4 cut(s)	201, 343, 404, 811
PspN4I	GGNNCC	3 cut(s)	114, 403, 817
PspPI	GGNCC	6 cut(s)	42, 107, 134, 559, 693, 815
PspPPI	RGGWCCY	1 cut(s)	815
PstNI	CAGNNNCTG	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	23, 795
RsaNI	GTAC	2 cut(s)	22, 794
RseI	CAYNNNNRTG	1 cut(s)	789
SacI	GAGCTC	1 cut(s)	526
SalI	GTCGAC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	548, 554
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	6 cut(s)	42, 107, 134, 559, 693, 815
SchI	GAGTC	4 cut(s)	596, 597, 602, 614
ScrFI	CCNGG	6 cut(s)	133, 203, 345, 406, 778, 813
SduI	GDGCHC	2 cut(s)	96, 526
SetI	ASST	7 cut(s)	15, 27, 174, 346, 361, 475, 526
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	2 cut(s)	107, 815
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	2 cut(s)	257, 427
SmoI	CTYRAG	2 cut(s)	257, 427
SpeI	ACTAGT	1 cut(s)	512
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	6 cut(s)	223, 321, 392, 456, 549, 797
SspMI	CTAG	2 cut(s)	14, 513
SstI	GAGCTC	1 cut(s)	526
StyD4I	CCNGG	6 cut(s)	131, 201, 343, 404, 776, 811
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	2 cut(s)	27, 475
TaqI	TCGA	2 cut(s)	143, 715
TasI	AATT	6 cut(s)	223, 321, 392, 456, 549, 797
TatI	WGTACW	1 cut(s)	793
TauI	GCSGC	6 cut(s)	61, 195, 545, 577, 659, 737
TfiI	GAWTC	3 cut(s)	175, 230, 596
Tru1I	TTAA	2 cut(s)	548, 554
Tru9I	TTAA	2 cut(s)	548, 554
TseI	GCWGC	8 cut(s)	50, 55, 74, 128, 252, 709, 737, 746
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	524
VpaK11BI	GGWCC	2 cut(s)	107, 815
XapI	RAATTY	2 cut(s)	321, 392
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	2 cut(s)	14, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.