Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

64836483 .. 64840008

Gene Structure 3526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG399400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTGATCACATAGTGTTGTACGTCGACCGTCTCATTAGGCCCATGGCCTCGCAGCCGCCGTCCGACGTTAAGGCGGCAGTGGAGGACCCGGCGCCGCCGGAGACCGAGGCCGGACCTTCGTCTAGCTCGTCGGCGGCGGCGGAGGGCGACTGCGGCGAGGAGGAGGAGGAGGAGCAGGAGCCGTTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCGTCAACAATTTGGAAACTCCTTGTGCCTGTTGCGGCAGCCTCAAGTATGCTCATAGGAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGAGATATAACTTGTGAAATTTGCCATCAGCCTTACCAACCAGGCTACACTGCACCTCCTCGTCCACATCCTGATGAAACTACTATTGAAATAGGAGGCTGGACACTTTCTGGGTCTCCTTTGAGTTTGGACGATCCACGCATCTTGTCAATTACGGAAGCAGAACGTCAGTTTCTGGATACTGAATATGATGAGTATGCTGCTTCAAGTAGTAATGGGGCTCCATTTTTCCGATCCGCTGCCTTAATTCTAATGGCCCTTCTGATCTTGCGACATGCATTGAGGGTCACAGATGATGATTCCGGTGATGATACATCTGCTATTTTCTCGGTAAGTGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

220

Amino Acids

23.95

Weight (kDa)

4.27

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	69 - 114	3.5e-12	RING-variant domain
DUF3675	PF12428	120 - 217	6.3e-26	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	446, 546
AcsI	RAATTY	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	407, 525
AjnI	CCWGG	2 cut(s)	216, 358
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw26I	GTCTC	3 cut(s)	38, 98, 438
AlwI	GGATC	2 cut(s)	446, 546
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	4 cut(s)	41, 48, 111, 573
ApeKI	GCWGC	4 cut(s)	55, 267, 518, 557
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	4 cut(s)	42, 88, 116, 574
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	88, 116
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	541
BbvI	GCAGC	4 cut(s)	67, 279, 505, 544
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	3 cut(s)	46, 169, 213
BciT130I	CCWGG	2 cut(s)	218, 360
BciVI	GTATCC	1 cut(s)	490
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	3 cut(s)	38, 98, 438
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	490
Bme1390I	CCNGG	3 cut(s)	92, 218, 360
Bme18I	GGWCC	2 cut(s)	88, 116
BmgT120I	GGNCC	4 cut(s)	42, 88, 116, 574
BmiI	GGNNCC	4 cut(s)	90, 96, 183, 540
BmrFI	CCNGG	3 cut(s)	92, 218, 360
BmsI	GCATC	1 cut(s)	468
BoxI	GACNNNNGTC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	98, 438
BsaJI	CCNNGG	2 cut(s)	45, 108
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	218, 360
BseDI	CCNNGG	2 cut(s)	45, 108
BseGI	GGATG	2 cut(s)	226, 385
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	316
BseRI	GAGGAG	6 cut(s)	176, 179, 182, 185, 188, 366
BseXI	GCAGC	4 cut(s)	67, 279, 505, 544
BsgI	GTGCAG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	43, 50, 113, 575
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	4 cut(s)	92, 101, 114, 621
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	3 cut(s)	38, 98, 438
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	4 cut(s)	43, 50, 113, 575
Bso31I	GGTCTC	2 cut(s)	98, 438
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	4 cut(s)	7, 451, 551, 582
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	4 cut(s)	43, 50, 113, 575
BspLI	GGNNCC	4 cut(s)	90, 96, 183, 540
BspPI	GGATC	2 cut(s)	446, 546
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	2 cut(s)	98, 438
BsrDI	GCAATG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	45, 108
BssMI	GATC	4 cut(s)	7, 451, 551, 582
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	218, 360
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	226, 385
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	4 cut(s)	10, 454, 554, 585
BstMAI	GTCTC	3 cut(s)	38, 98, 438
BstMBI	GATC	4 cut(s)	7, 451, 551, 582
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 213
BstNI	CCWGG	2 cut(s)	218, 360
BstNSI	RCATGY	1 cut(s)	596
BstPAI	GACNNNNGTC	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	90, 216, 358
BstV1I	GCAGC	4 cut(s)	67, 279, 505, 544
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	43, 50, 113, 575
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	226, 385
BtsI	GCAGTG	2 cut(s)	87, 366
BtsIMutI	CAGTG	2 cut(s)	87, 366
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	4 cut(s)	42, 88, 116, 574
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	2 cut(s)	46, 593
CviQI	GTAC	1 cut(s)	22
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	4 cut(s)	9, 453, 553, 584
DpnII	GATC	4 cut(s)	7, 451, 551, 582
DraIII	CACNNNGTG	1 cut(s)	16
EciI	GGCGGA	2 cut(s)	158, 215
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	541
Eco31I	GGTCTC	2 cut(s)	98, 438
Eco47I	GGWCC	2 cut(s)	88, 116
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	216, 358
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	541
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	49, 596
FaiI	YATR	8 cut(s)	14, 47, 279, 285, 326, 507, 516, 594
FatI	CATG	2 cut(s)	45, 592
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	2 cut(s)	233, 372
FriOI	GRGCYC	1 cut(s)	541
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	4 cut(s)	43, 50, 113, 575
HapII	CCGG	4 cut(s)	92, 101, 114, 621
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	49, 596
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	28, 235
HindII	GTYRAC	2 cut(s)	28, 235
HinfI	GANTC	2 cut(s)	190, 617
HpaII	CCGG	4 cut(s)	92, 101, 114, 621
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	28, 235, 383
Hpy188I	TCNGA	4 cut(s)	67, 195, 551, 582
Hpy188III	TCNNGA	2 cut(s)	389, 494
Hpy8I	GTNNAC	3 cut(s)	28, 235, 383
Hpy99I	CGWCG	3 cut(s)	29, 71, 136
HpyAV	CCTTC	2 cut(s)	129, 587
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	24, 69, 484
HpyCH4V	TGCA	3 cut(s)	309, 371, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 213
HpySE526I	ACGT	3 cut(s)	24, 69, 484
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	49, 596
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 451, 551, 582
LmnI	GCTCC	3 cut(s)	175, 181, 544
Lsp1109I	GCAGC	4 cut(s)	67, 279, 505, 544
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	3 cut(s)	24, 69, 484
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	4 cut(s)	9, 453, 553, 584
MboI	GATC	4 cut(s)	7, 451, 551, 582
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	238, 336, 468, 564
Mly113I	GGCGCC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	3 cut(s)	72, 563, 661
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	4 cut(s)	92, 101, 114, 621
MspR9I	CCNGG	3 cut(s)	92, 218, 360
MvaI	CCWGG	2 cut(s)	218, 360
MwoI	GCNNNNNNNGC	2 cut(s)	156, 213
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	7, 451, 551, 582
NlaIII	CATG	2 cut(s)	49, 596
NlaIV	GGNNCC	4 cut(s)	90, 96, 183, 540
NmuCI	GTSAC	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 128
PfeI	GAWTC	2 cut(s)	190, 617
PluTI	GGCGCC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	216, 358
PspGI	CCWGG	2 cut(s)	216, 358
PspN4I	GGNNCC	4 cut(s)	90, 96, 183, 540
PspPI	GGNCC	4 cut(s)	42, 88, 116, 574
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	72, 563, 661
Sau3AI	GATC	4 cut(s)	7, 451, 551, 582
Sau96I	GGNCC	4 cut(s)	42, 88, 116, 574
ScrFI	CCNGG	3 cut(s)	92, 218, 360
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	6 cut(s)	27, 72, 121, 131, 376, 487
SfaNI	GCATC	1 cut(s)	468
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	2 cut(s)	88, 116
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	238, 336, 468, 564
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	90, 216, 358
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	3 cut(s)	27, 72, 487
TaqI	TCGA	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	238, 336, 468, 564
TauI	GCSGC	8 cut(s)	61, 80, 100, 140, 143, 159, 210, 267
TfiI	GAWTC	2 cut(s)	190, 617
Tru1I	TTAA	3 cut(s)	72, 563, 661
Tru9I	TTAA	3 cut(s)	72, 563, 661
TscAI	CASTG	2 cut(s)	87, 373
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	55, 267, 518, 557
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	2 cut(s)	87, 373
VpaK11BI	GGWCC	2 cut(s)	88, 116
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.