Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004007

Physical Location & Seq

Genomic Coordinates Forward (+)

4189503 .. 4192592

Gene Structure 3090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATGACGAGTCCGATGACGACGGTGGTAATTGATAAAGCAACTTCATTTGTCCAAATCAGTTCGTTCGGTGAAGTCGGGGACAAGACAGCCAGCACTATATGTAGCCATTTGGCTATTTTGGGCAAATCCAAATTAACATCCAACGGACGACTCCAATTAGAAAATTCACGAAATTCACGAAATTCACTCTCCCTCTCTCTCTCTCTCTCTCTCTTCCTCGATTATCTTAACGCGCTTTCGATTTTCCTCTCCTACTCGGAGGTCCGTTTTTCTGTGCAATCGGCAATGAGTGACCACCTCGTGTTGTACGTTGACCGCCTCCTTCGGCCAATGGCAGCGCAGCCGCCTTCCGAGCCTGCTGAGGCTGGTTCTGTGCCTGAGCCGGCTGGACCGGAGCCAGAACTGGATGCCGCCGGGCCTTCTTCGAGTTCGTCATCGGAGGAGGCGGATGAGGAGGAACCGCTGATTCAGACGGCGGAGTGCCGCATTTGCCAGGATGAGGATAGCGTTAGCAATTTGGAATCTCCTTGCGCCTGTTGTGGCAGCCTCAAGTATGCTCATAGAAAATGTGTTCAGTATTGGTGCAATGAGAAAGGGGATATAACTTGTGAAATTTGTCATCAGCCTTACCAACCTGGCTACACTGCACCTCCTCGTCCACCATCTGATGAAACTACTATTGAAATTGGCGGTGGCTGGACACTTTCTGGCACTCCCTTGAGTTTGGATGATCCACGCATTTTGTCAATTGCAGAGGCAGAACGTCAGTTTATGGATACTGAATATGATGATTATTCTTCAAGTAGTAGTGGAGCTCCATTCTTTCGTTCAGCTGCCTTAATTCTTTGGTTTTTTATTTTGCAGTTAATGGCCCTTCTAATCTTGCGGCATGCATTGAGGGCCTCAGTTTCTGACTCCGACTCTGGGGATGACAGTGACACATCTGCCATTTTCTCTCTTTTCTTGCTTAGAGCAGCTGGCTTTCTACTGCCCTGCTATATTATGGCTTGGGCCATCAGTATCTTGCAGCGTCGACAGCAAAGACAGGAGGCCGCAGCAATGGCAGCAGCCCAAGTTGCTTTTGTTCTTCAATCCGGGCAACATAGGGGTTTACAATTTGCGGTAGCACCAGGACCCAGTGGAACTCCACATCCAGAAACTGCACATCAAGAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

395

Amino Acids

42.69

Weight (kDa)

4.69

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	162 - 207	9.9e-12	RING-variant domain
DUF3675	PF12428	213 - 340	6.9e-32	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960 AT2G02960
fragaria_vesca	FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340 FvH4_4g31340
malus_domestica	MD13G1072100.v1.1 MD16G1072700.v1.1
prunus_persica	Prupe.1G274900_v2.0.a1 Prupe.1G274900_v2.0.a1
pyrus_communis	pycom13g06470 pycom16g06300
rosa_chinensis	RchiOBHm_Chr4g0439841
rosa_laevigata	RLG00000006235
rosa_multiflora	Rmu_sc0027721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380740
rosa_rugosa	Rorug04G0321800 Rorug04G0321800
rosa_samantha	Rh4AG372600 Rh4BG385000 Rh4CG399400 Rh4DG379300
rosa_wichuraiana	Rw4G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1036
AccII	CGCG	1 cut(s)	236
AclWI	GGATC	1 cut(s)	728
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	4 cut(s)	166, 175, 184, 615
AdeI	CACNNNGTG	1 cut(s)	304
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	502, 927
AgsI	TTSAA	3 cut(s)	686, 804, 1094
AjnI	CCWGG	3 cut(s)	495, 637, 1132
AloI	GAACNNNNNNTCC	2 cut(s)	1138, 1170
AluBI	AGCT	3 cut(s)	818, 836, 980
AluI	AGCT	3 cut(s)	818, 836, 980
Alw21I	GWGCWC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	728
AlwNI	CAGNNNCTG	2 cut(s)	914, 1163
AoxI	GGCC	6 cut(s)	329, 419, 873, 903, 1014, 1053
ApeKI	GCWGC	9 cut(s)	338, 343, 546, 836, 977, 1030, 1058, 1067, 1070
ApoI	RAATTY	4 cut(s)	166, 175, 184, 615
AspLEI	GCGC	3 cut(s)	238, 343, 536
AspS9I	GGNCC	7 cut(s)	265, 392, 419, 874, 903, 1014, 1136
AsuC2I	CCSGG	2 cut(s)	418, 1099
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	265, 392, 1136
BanII	GRGCYC	1 cut(s)	820
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	820
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	9 cut(s)	350, 355, 558, 823, 989, 1042, 1070, 1079, 1082
BccI	CCATC	2 cut(s)	673, 1025
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	3 cut(s)	497, 639, 1134
BciVI	GTATCC	1 cut(s)	772
BcnI	CCSGG	2 cut(s)	418, 1099
BfuI	GTATCC	1 cut(s)	772
Bme1390I	CCNGG	5 cut(s)	418, 497, 639, 1099, 1134
Bme18I	GGWCC	3 cut(s)	265, 392, 1136
BmgT120I	GGNCC	7 cut(s)	265, 392, 419, 874, 903, 1014, 1136
BmiI	GGNNCC	3 cut(s)	399, 462, 1138
BmrFI	CCNGG	5 cut(s)	418, 497, 639, 1099, 1134
BmrI	ACTGGG	1 cut(s)	1134
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	1134
Bpu10I	CCTNAGC	2 cut(s)	363, 381
BpuEI	CTTGAG	2 cut(s)	536, 742
BpuMI	CCSGG	2 cut(s)	418, 1099
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 927
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	411, 1140
Bse3DI	GCAATG	3 cut(s)	294, 595, 1068
BseBI	CCWGG	3 cut(s)	497, 639, 1134
BseGI	GGATG	7 cut(s)	140, 415, 457, 505, 736, 937, 1153
BseLI	CCNNNNNNNGG	2 cut(s)	502, 927
BseMI	GCAATG	3 cut(s)	294, 595, 1068
BseMII	CTCAG	3 cut(s)	354, 372, 921
BseNI	ACTGG	2 cut(s)	411, 1140
BseRI	GAGGAG	3 cut(s)	458, 470, 645
BseXI	GCAGC	9 cut(s)	350, 355, 558, 823, 989, 1042, 1070, 1079, 1082
BsgI	GTGCAG	2 cut(s)	633, 1149
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	6 cut(s)	331, 421, 875, 905, 1016, 1055
BsiHKAI	GWGCWC	1 cut(s)	820
BsiSI	CCGG	4 cut(s)	386, 395, 417, 1098
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	502, 927
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	6 cut(s)	331, 421, 875, 905, 1016, 1055
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	1 cut(s)	733
BspANI	GGCC	6 cut(s)	331, 421, 875, 905, 1016, 1055
BspCNI	CTCAG	3 cut(s)	355, 373, 920
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	3 cut(s)	399, 462, 1138
BspPI	GGATC	1 cut(s)	728
BsrDI	GCAATG	3 cut(s)	294, 595, 1068
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	411, 1140
BssAI	RCCGGY	1 cut(s)	385
BssMI	GATC	1 cut(s)	733
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	497, 639, 1134
Bst4CI	ACNGT	2 cut(s)	25, 938
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	5 cut(s)	94, 360, 387, 894, 982
BstDEI	CTNAG	4 cut(s)	363, 381, 907, 971
BstF5I	GGATG	7 cut(s)	140, 415, 457, 505, 736, 937, 1153
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	3 cut(s)	238, 343, 536
BstKTI	GATC	1 cut(s)	736
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	7 cut(s)	355, 492, 902, 1039, 1064, 1067, 1079
BstNI	CCWGG	3 cut(s)	497, 639, 1134
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	5 cut(s)	416, 495, 637, 1097, 1132
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	9 cut(s)	350, 355, 558, 823, 989, 1042, 1070, 1079, 1082
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	6 cut(s)	331, 421, 875, 905, 1016, 1055
BtsCI	GGATG	7 cut(s)	140, 415, 457, 505, 736, 937, 1153
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	645, 943, 1147
Cac8I	GCNNGC	5 cut(s)	94, 360, 387, 894, 982
CaiI	CAGNNNCTG	2 cut(s)	914, 1163
CfoI	GCGC	3 cut(s)	238, 343, 536
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	7 cut(s)	265, 392, 419, 874, 903, 1014, 1136
CseI	GACGC	1 cut(s)	1022
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	1 cut(s)	893
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	363, 381, 907, 971
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
DraIII	CACNNNGTG	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	2 cut(s)	464, 494
Ecl136II	GAGCTC	1 cut(s)	818
Eco24I	GRGCYC	1 cut(s)	820
Eco47I	GGWCC	3 cut(s)	265, 392, 1136
Eco53kI	GAGCTC	1 cut(s)	818
EcoICRI	GAGCTC	1 cut(s)	818
EcoO109I	RGGNCCY	2 cut(s)	903, 1136
EcoRII	CCWGG	3 cut(s)	495, 637, 1132
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	820
FaeI	CATG	1 cut(s)	896
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	892
FblI	GTMKAC	1 cut(s)	1036
FokI	GGATG	7 cut(s)	127, 422, 464, 512, 743, 944, 1140
FriOI	GRGCYC	1 cut(s)	820
GlaI	GCGC	3 cut(s)	237, 342, 535
HaeIII	GGCC	6 cut(s)	331, 421, 875, 905, 1016, 1055
HapII	CCGG	4 cut(s)	386, 395, 417, 1098
HgaI	GACGC	1 cut(s)	1022
HhaI	GCGC	3 cut(s)	238, 343, 536
Hin1II	CATG	1 cut(s)	896
Hin6I	GCGC	3 cut(s)	236, 341, 534
HinP1I	GCGC	3 cut(s)	236, 341, 534
HincII	GTYRAC	2 cut(s)	316, 1037
HindII	GTYRAC	2 cut(s)	316, 1037
HinfI	GANTC	6 cut(s)	10, 153, 469, 524, 917, 923
HpaII	CCGG	4 cut(s)	386, 395, 417, 1098
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	4 cut(s)	316, 662, 1037, 1115
Hpy188I	TCNGA	8 cut(s)	15, 262, 355, 442, 474, 670, 916, 922
Hpy188III	TCNNGA	4 cut(s)	171, 180, 1157, 1172
Hpy8I	GTNNAC	4 cut(s)	316, 662, 1037, 1115
Hpy99I	CGWCG	2 cut(s)	25, 1038
HpyAV	CCTTC	4 cut(s)	335, 360, 432, 887
HpyCH4III	ACNGT	2 cut(s)	25, 938
HpyCH4IV	ACGT	2 cut(s)	312, 766
HpyCH4V	TGCA	8 cut(s)	280, 588, 650, 755, 865, 896, 1030, 1166
HpyF10VI	GCNNNNNNNGC	7 cut(s)	355, 492, 902, 1039, 1064, 1067, 1079
HpyF3I	CTNAG	4 cut(s)	363, 381, 907, 971
HpySE526I	ACGT	2 cut(s)	312, 766
Hsp92II	CATG	1 cut(s)	896
HspAI	GCGC	3 cut(s)	236, 341, 534
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	3 cut(s)	397, 815, 823
Lsp1109I	GCAGC	9 cut(s)	350, 355, 558, 823, 989, 1042, 1070, 1079, 1082
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	2 cut(s)	312, 766
MaeIII	GTNAC	2 cut(s)	293, 938
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	4 cut(s)	208, 417, 792, 1082
MfeI	CAATTG	1 cut(s)	750
MhlI	GDGCHC	1 cut(s)	820
MlyI	GAGTC	4 cut(s)	19, 147, 911, 917
MmeI	TCCRAC	2 cut(s)	168, 945
Mph1103I	ATGCAT	1 cut(s)	898
MroNI	GCCGGC	1 cut(s)	385
MseI	TTAA	4 cut(s)	137, 231, 842, 869
MspA1I	CMGCKG	3 cut(s)	466, 836, 980
MspI	CCGG	4 cut(s)	386, 395, 417, 1098
MspR9I	CCNGG	5 cut(s)	418, 497, 639, 1099, 1134
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	3 cut(s)	497, 639, 1134
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	7 cut(s)	355, 492, 902, 1039, 1064, 1067, 1079
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	2 cut(s)	418, 1099
NdeII	GATC	1 cut(s)	733
NgoMIV	GCCGGC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	896
NlaIV	GGNNCC	3 cut(s)	399, 462, 1138
NmuCI	GTSAC	2 cut(s)	293, 938
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	1 cut(s)	896
PaeI	GCATGC	1 cut(s)	896
PcsI	WCGNNNNNNNCGW	2 cut(s)	178, 309
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	469, 524
PleI	GAGTC	4 cut(s)	18, 147, 911, 917
PpsI	GAGTC	4 cut(s)	18, 147, 911, 917
PpuMI	RGGWCCY	1 cut(s)	1136
Psp124BI	GAGCTC	1 cut(s)	820
Psp5II	RGGWCCY	1 cut(s)	1136
Psp6I	CCWGG	3 cut(s)	495, 637, 1132
PspGI	CCWGG	3 cut(s)	495, 637, 1132
PspN4I	GGNNCC	3 cut(s)	399, 462, 1138
PspPI	GGNCC	7 cut(s)	265, 392, 419, 874, 903, 1014, 1136
PspPPI	RGGWCCY	1 cut(s)	1136
PstNI	CAGNNNCTG	2 cut(s)	914, 1163
PvuII	CAGCTG	2 cut(s)	836, 980
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	820
SalI	GTCGAC	1 cut(s)	1035
SaqAI	TTAA	4 cut(s)	137, 231, 842, 869
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	7 cut(s)	265, 392, 419, 874, 903, 1014, 1136
SchI	GAGTC	4 cut(s)	19, 147, 911, 917
ScrFI	CCNGG	5 cut(s)	418, 497, 639, 1099, 1134
SduI	GDGCHC	1 cut(s)	820
SetI	ASST	9 cut(s)	267, 303, 315, 640, 655, 769, 820, 838, 982
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	3 cut(s)	265, 392, 1136
SmlI	CTYRAG	2 cut(s)	551, 721
SmoI	CTYRAG	2 cut(s)	551, 721
SphI	GCATGC	1 cut(s)	896
SstI	GAGCTC	1 cut(s)	820
StyD4I	CCNGG	5 cut(s)	416, 495, 637, 1097, 1132
TaaI	ACNGT	2 cut(s)	25, 938
TaiI	ACGT	2 cut(s)	315, 769
TaqI	TCGA	4 cut(s)	222, 242, 428, 1036
TauI	GCSGC	5 cut(s)	349, 416, 489, 892, 1058
TfiI	GAWTC	2 cut(s)	469, 524
Tru1I	TTAA	4 cut(s)	137, 231, 842, 869
Tru9I	TTAA	4 cut(s)	137, 231, 842, 869
TscAI	CASTG	3 cut(s)	652, 943, 1147
TseFI	GTSAC	2 cut(s)	293, 938
TseI	GCWGC	9 cut(s)	338, 343, 546, 836, 977, 1030, 1058, 1067, 1070
Tsp45I	GTSAC	2 cut(s)	293, 938
TspDTI	ATGAA	2 cut(s)	36, 687
TspGWI	ACGGA	2 cut(s)	162, 257
TspRI	CASTG	3 cut(s)	652, 943, 1147
VpaK11BI	GGWCC	3 cut(s)	265, 392, 1136
XapI	RAATTY	4 cut(s)	166, 175, 184, 615
XceI	RCATGY	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	1036
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.