Contains the following InterPro domains RNA helicase, DEAD-box type, Q motif (InterPro IPR014014), DNA RNA helicase, DEAD DEAH box type, N-terminal (InterPro IPR011545), DEAD-like helicase, N-terminal (InterPro IPR014001), DNA RNA helicase, C-terminal (InterPro IPR001650), Helicase, superfamily 1 2, ATP-binding domain (InterPro IPR014021)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63250 AT2G07750 AT5G08620 |
| fragaria_vesca | FvH4_5g01920 |
| malus_domestica | MD06G1077400.v1.1 |
| prunus_persica | Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 |
| pyrus_communis | pycom06g07520 |
| rosa_chinensis | RchiOBHm_Chr7g0198601 |
| rosa_laevigata | RLG00000003858 |
| rosa_multiflora | Rmu_sc0004229.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00257630 |
| rosa_rugosa | Rorug07G0048400 |
| rosa_samantha | Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400 |
| rosa_wichuraiana | Rw7G015080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 815, 1905 |
| Acc65I | GGTACC | 1 cut(s) | 770 |
| AccB1I | GGYRCC | 1 cut(s) | 770 |
| AccI | GTMKAC | 1 cut(s) | 2131 |
| AccII | CGCG | 3 cut(s) | 1474, 1582, 2489 |
| AciI | CCGC | 4 cut(s) | 1329, 1707, 2487, 2489 |
| AclI | AACGTT | 1 cut(s) | 1980 |
| AclWI | GGATC | 5 cut(s) | 333, 361, 1451, 1557, 1767 |
| AcoI | YGGCCR | 1 cut(s) | 2418 |
| AcsI | RAATTY | 3 cut(s) | 354, 533, 761 |
| AcuI | CTGAAG | 2 cut(s) | 891, 1462 |
| AfaI | GTAC | 5 cut(s) | 772, 1471, 1863, 1952, 2357 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 398, 1263 |
| AflII | CTTAAG | 1 cut(s) | 1160 |
| AflIII | ACRYGT | 2 cut(s) | 611, 2021 |
| AgeI | ACCGGT | 2 cut(s) | 1928, 2396 |
| AjnI | CCWGG | 1 cut(s) | 250 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 305, 337 |
| Alw21I | GWGCWC | 2 cut(s) | 794, 1884 |
| Alw26I | GTCTC | 7 cut(s) | 10, 63, 67, 120, 1681, 1741, 2397 |
| AlwI | GGATC | 5 cut(s) | 333, 361, 1451, 1557, 1767 |
| AoxI | GGCC | 2 cut(s) | 1590, 2418 |
| ApeKI | GCWGC | 2 cut(s) | 1406, 2351 |
| ApoI | RAATTY | 3 cut(s) | 354, 533, 761 |
| AseI | ATTAAT | 1 cut(s) | 1032 |
| AsiGI | ACCGGT | 2 cut(s) | 1928, 2396 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1308, 2268 |
| Asp718I | GGTACC | 1 cut(s) | 770 |
| AspLEI | GCGC | 4 cut(s) | 180, 1168, 1476, 2218 |
| AspS9I | GGNCC | 7 cut(s) | 195, 236, 360, 434, 521, 1591, 1726 |
| AsuC2I | CCSGG | 4 cut(s) | 166, 1264, 1536, 1964 |
| AsuHPI | GGTGA | 3 cut(s) | 413, 538, 1825 |
| AsuII | TTCGAA | 1 cut(s) | 2479 |
| AvaII | GGWCC | 6 cut(s) | 195, 236, 360, 434, 521, 1726 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2010, 2043 |
| BanI | GGYRCC | 1 cut(s) | 770 |
| BanII | GRGCYC | 3 cut(s) | 446, 794, 1788 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1854, 1886 |
| BauI | CACGAG | 2 cut(s) | 287, 2085 |
| BbsI | GAAGAC | 1 cut(s) | 1546 |
| Bbv12I | GWGCWC | 2 cut(s) | 794, 1884 |
| BbvCI | CCTCAGC | 1 cut(s) | 2007 |
| BbvI | GCAGC | 2 cut(s) | 1393, 2363 |
| BccI | CCATC | 4 cut(s) | 512, 913, 1582, 2491 |
| BceAI | ACGGC | 1 cut(s) | 426 |
| BciT130I | CCWGG | 1 cut(s) | 252 |
| BclI | TGATCA | 3 cut(s) | 538, 1486, 2311 |
| BcnI | CCSGG | 4 cut(s) | 166, 1264, 1536, 1964 |
| BcoDI | GTCTC | 7 cut(s) | 10, 63, 67, 120, 1681, 1741, 2397 |
| BfaI | CTAG | 7 cut(s) | 33, 144, 1197, 1229, 1499, 1631, 1998 |
| BfmI | CTRYAG | 1 cut(s) | 1407 |
| BfoI | RGCGCY | 1 cut(s) | 1169 |
| BfrI | CTTAAG | 1 cut(s) | 1160 |
| BglII | AGATCT | 2 cut(s) | 1048, 2281 |
| BisI | GCNGC | 2 cut(s) | 1407, 2352 |
| BlsI | GCNGC | 2 cut(s) | 1408, 2353 |
| Bme1390I | CCNGG | 5 cut(s) | 166, 252, 1264, 1536, 1964 |
| Bme18I | GGWCC | 6 cut(s) | 195, 236, 360, 434, 521, 1726 |
| BmgT120I | GGNCC | 7 cut(s) | 195, 236, 360, 434, 521, 1591, 1726 |
| BmiI | GGNNCC | 2 cut(s) | 206, 772 |
| BmrFI | CCNGG | 5 cut(s) | 166, 252, 1264, 1536, 1964 |
| BmsI | GCATC | 4 cut(s) | 189, 712, 1198, 1231 |
| BpiI | GAAGAC | 1 cut(s) | 1546 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1035, 1067, 1678, 1710 |
| BpmI | CTGGAG | 2 cut(s) | 273, 2262 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2007 |
| Bpu14I | TTCGAA | 1 cut(s) | 2479 |
| BpuMI | CCSGG | 4 cut(s) | 166, 1264, 1536, 1964 |
| BsaJI | CCNNGG | 5 cut(s) | 250, 465, 774, 2219, 2487 |
| BsaWI | WCCGGW | 5 cut(s) | 61, 398, 523, 1928, 2396 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 702, 732, 1995, 2025 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 398, 1263 |
| Bse118I | RCCGGY | 3 cut(s) | 121, 1928, 2396 |
| Bse1I | ACTGG | 1 cut(s) | 2179 |
| Bse3DI | GCAATG | 2 cut(s) | 278, 901 |
| BseBI | CCWGG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 5 cut(s) | 250, 465, 774, 2219, 2487 |
| BseGI | GGATG | 3 cut(s) | 388, 924, 1213 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 398, 1263 |
| BseMI | GCAATG | 2 cut(s) | 278, 901 |
| BseMII | CTCAG | 4 cut(s) | 1066, 1212, 1497, 2021 |
| BseNI | ACTGG | 1 cut(s) | 2179 |
| BseRI | GAGGAG | 2 cut(s) | 607, 1100 |
| BseXI | GCAGC | 2 cut(s) | 1393, 2363 |
| BsgI | GTGCAG | 2 cut(s) | 513, 1223 |
| Bsh1236I | CGCG | 3 cut(s) | 1474, 1582, 2489 |
| BshFI | GGCC | 2 cut(s) | 1592, 2420 |
| BshNI | GGYRCC | 1 cut(s) | 770 |
| BshTI | ACCGGT | 2 cut(s) | 1928, 2396 |
| BsiHKAI | GWGCWC | 2 cut(s) | 794, 1884 |
| BslFI | GGGAC | 1 cut(s) | 1279 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 398, 1263 |
| BsmAI | GTCTC | 7 cut(s) | 10, 63, 67, 120, 1681, 1741, 2397 |
| BsmBI | CGTCTC | 2 cut(s) | 63, 67 |
| BsmFI | GGGAC | 1 cut(s) | 1279 |
| BsnI | GGCC | 2 cut(s) | 1592, 2420 |
| Bsp119I | TTCGAA | 1 cut(s) | 2479 |
| Bsp1286I | GDGCHC | 4 cut(s) | 446, 794, 1788, 1884 |
| Bsp1407I | TGTACA | 1 cut(s) | 1950 |
| Bsp19I | CCATGG | 1 cut(s) | 2219 |
| BspACI | CCGC | 4 cut(s) | 1329, 1707, 2487, 2489 |
| BspANI | GGCC | 2 cut(s) | 1592, 2420 |
| BspCNI | CTCAG | 4 cut(s) | 1065, 1213, 1498, 2020 |
| BspFNI | CGCG | 3 cut(s) | 1474, 1582, 2489 |
| BspHI | TCATGA | 2 cut(s) | 1102, 1804 |
| BspLI | GGNNCC | 2 cut(s) | 206, 772 |
| BspMAI | CTGCAG | 1 cut(s) | 1411 |
| BspPI | GGATC | 5 cut(s) | 333, 361, 1451, 1557, 1767 |
| BspQI | GCTCTTC | 2 cut(s) | 782, 1002 |
| BspT104I | TTCGAA | 1 cut(s) | 2479 |
| BspT107I | GGYRCC | 1 cut(s) | 770 |
| BspTI | CTTAAG | 1 cut(s) | 1160 |
| BsrDI | GCAATG | 2 cut(s) | 278, 901 |
| BsrFI | RCCGGY | 3 cut(s) | 121, 1928, 2396 |
| BsrGI | TGTACA | 1 cut(s) | 1950 |
| BsrI | ACTGG | 1 cut(s) | 2179 |
| BssAI | RCCGGY | 3 cut(s) | 121, 1928, 2396 |
| BssECI | CCNNGG | 5 cut(s) | 250, 465, 774, 2219, 2487 |
| BssNAI | GTATAC | 1 cut(s) | 2132 |
| BssSI | CACGAG | 2 cut(s) | 287, 2085 |
| BssT1I | CCWWGG | 3 cut(s) | 465, 774, 2219 |
| Bst1107I | GTATAC | 1 cut(s) | 2132 |
| Bst2BI | CACGAG | 2 cut(s) | 287, 2085 |
| Bst2UI | CCWGG | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 5 cut(s) | 81, 1118, 1235, 1309, 2151 |
| Bst6I | CTCTTC | 6 cut(s) | 161, 782, 867, 1002, 1701, 2173 |
| BstAFI | CTTAAG | 1 cut(s) | 1160 |
| BstAUI | TGTACA | 1 cut(s) | 1950 |
| BstBI | TTCGAA | 1 cut(s) | 2479 |
| BstC8I | GCNNGC | 1 cut(s) | 1396 |
| BstDEI | CTNAG | 8 cut(s) | 170, 1052, 1221, 1506, 1636, 1858, 2007, 2325 |
| BstDSI | CCRYGG | 2 cut(s) | 2219, 2487 |
| BstF5I | GGATG | 3 cut(s) | 388, 924, 1213 |
| BstFNI | CGCG | 3 cut(s) | 1474, 1582, 2489 |
| BstH2I | RGCGCY | 1 cut(s) | 1169 |
| BstHHI | GCGC | 4 cut(s) | 180, 1168, 1476, 2218 |
| BstMAI | GTCTC | 7 cut(s) | 10, 63, 67, 120, 1681, 1741, 2397 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 175, 1165, 1172, 1335, 2360, 2426 |
| BstNI | CCWGG | 1 cut(s) | 252 |
| BstNSI | RCATGY | 3 cut(s) | 615, 1897, 2025 |
| BstSCI | CCNGG | 5 cut(s) | 164, 250, 1262, 1534, 1962 |
| BstSFI | CTRYAG | 1 cut(s) | 1407 |
| BstUI | CGCG | 3 cut(s) | 1474, 1582, 2489 |
| BstV1I | GCAGC | 2 cut(s) | 1393, 2363 |
| BstV2I | GAAGAC | 1 cut(s) | 1546 |
| BstX2I | RGATCY | 3 cut(s) | 366, 1048, 2281 |
| BstYI | RGATCY | 3 cut(s) | 366, 1048, 2281 |
| BstZ17I | GTATAC | 1 cut(s) | 2132 |
| BsuRI | GGCC | 2 cut(s) | 1592, 2420 |
| BtgI | CCRYGG | 2 cut(s) | 2219, 2487 |
| BtgZI | GCGATG | 2 cut(s) | 20, 1563 |
| BtsCI | GGATG | 3 cut(s) | 388, 924, 1213 |
| BtsI | GCAGTG | 1 cut(s) | 949 |
| BtsIMutI | CAGTG | 3 cut(s) | 949, 1123, 1943 |
| Cac8I | GCNNGC | 1 cut(s) | 1396 |
| CciI | TCATGA | 2 cut(s) | 1102, 1804 |
| CfoI | GCGC | 4 cut(s) | 180, 1168, 1476, 2218 |
| Cfr10I | RCCGGY | 3 cut(s) | 121, 1928, 2396 |
| Cfr13I | GGNCC | 7 cut(s) | 195, 236, 360, 434, 521, 1591, 1726 |
| Cfr42I | CCGCGG | 1 cut(s) | 2490 |
| CpoI | CGGWCCG | 1 cut(s) | 360 |
| CseI | GACGC | 3 cut(s) | 936, 1164, 1165 |
| Csp6I | GTAC | 5 cut(s) | 771, 1470, 1862, 1951, 2356 |
| CspAI | ACCGGT | 2 cut(s) | 1928, 2396 |
| CspI | CGGWCCG | 1 cut(s) | 360 |
| CviQI | GTAC | 5 cut(s) | 771, 1470, 1862, 1951, 2356 |
| DdeI | CTNAG | 8 cut(s) | 170, 1052, 1221, 1506, 1636, 1858, 2007, 2325 |
| DraI | TTTAAA | 1 cut(s) | 1752 |
| EaeI | YGGCCR | 1 cut(s) | 2418 |
| Eam1104I | CTCTTC | 6 cut(s) | 161, 782, 867, 1002, 1701, 2173 |
| EarI | CTCTTC | 6 cut(s) | 161, 782, 867, 1002, 1701, 2173 |
| Ecl136II | GAGCTC | 1 cut(s) | 792 |
| Eco130I | CCWWGG | 3 cut(s) | 465, 774, 2219 |
| Eco24I | GRGCYC | 3 cut(s) | 446, 794, 1788 |
| Eco32I | GATATC | 2 cut(s) | 30, 967 |
| Eco47I | GGWCC | 6 cut(s) | 195, 236, 360, 434, 521, 1726 |
| Eco53kI | GAGCTC | 1 cut(s) | 792 |
| Eco57I | CTGAAG | 2 cut(s) | 891, 1462 |
| EcoICRI | GAGCTC | 1 cut(s) | 792 |
| EcoO109I | RGGNCCY | 1 cut(s) | 195 |
| EcoRI | GAATTC | 1 cut(s) | 354 |
| EcoRII | CCWGG | 1 cut(s) | 250 |
| EcoRV | GATATC | 2 cut(s) | 30, 967 |
| EcoT14I | CCWWGG | 3 cut(s) | 465, 774, 2219 |
| EcoT22I | ATGCAT | 2 cut(s) | 1246, 2365 |
| EcoT38I | GRGCYC | 3 cut(s) | 446, 794, 1788 |
| ErhI | CCWWGG | 3 cut(s) | 465, 774, 2219 |
| Esp3I | CGTCTC | 2 cut(s) | 63, 67 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 91, 123, 1556, 1588, 2190, 2222 |
| FaqI | GGGAC | 1 cut(s) | 1279 |
| FbaI | TGATCA | 3 cut(s) | 538, 1486, 2311 |
| FblI | GTMKAC | 1 cut(s) | 2131 |
| Fnu4HI | GCNGC | 2 cut(s) | 1407, 2352 |
| FokI | GGATG | 3 cut(s) | 375, 931, 1220 |
| FriOI | GRGCYC | 3 cut(s) | 446, 794, 1788 |
| Fsp4HI | GCNGC | 2 cut(s) | 1407, 2352 |
| FspBI | CTAG | 7 cut(s) | 33, 144, 1197, 1229, 1499, 1631, 1998 |
| GlaI | GCGC | 4 cut(s) | 179, 1167, 1475, 2217 |
| GluI | GCNGC | 2 cut(s) | 1407, 2352 |
| GsuI | CTGGAG | 2 cut(s) | 273, 2262 |
| HaeII | RGCGCY | 1 cut(s) | 1169 |
| HaeIII | GGCC | 2 cut(s) | 1592, 2420 |
| HgaI | GACGC | 3 cut(s) | 936, 1164, 1165 |
| HhaI | GCGC | 4 cut(s) | 180, 1168, 1476, 2218 |
| Hin6I | GCGC | 4 cut(s) | 178, 1166, 1474, 2216 |
| HinP1I | GCGC | 4 cut(s) | 178, 1166, 1474, 2216 |
| HincII | GTYRAC | 1 cut(s) | 1612 |
| HindII | GTYRAC | 1 cut(s) | 1612 |
| HphI | GGTGA | 3 cut(s) | 413, 538, 1825 |
| Hpy166II | GTNNAC | 5 cut(s) | 629, 1342, 1612, 1953, 2132 |
| Hpy8I | GTNNAC | 5 cut(s) | 629, 1342, 1612, 1953, 2132 |
| Hpy99I | CGWCG | 4 cut(s) | 132, 799, 952, 1734 |
| HpyAV | CCTTC | 4 cut(s) | 701, 834, 884, 2177 |
| HpyCH4III | ACNGT | 5 cut(s) | 81, 1118, 1235, 1309, 2151 |
| HpyCH4IV | ACGT | 4 cut(s) | 280, 717, 1980, 2414 |
| HpyCH4V | TGCA | 9 cut(s) | 286, 494, 1121, 1204, 1244, 1298, 1394, 1409, 2363 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 175, 1165, 1172, 1335, 2360, 2426 |
| HpyF3I | CTNAG | 8 cut(s) | 170, 1052, 1221, 1506, 1636, 1858, 2007, 2325 |
| HpySE526I | ACGT | 4 cut(s) | 280, 717, 1980, 2414 |
| HspAI | GCGC | 4 cut(s) | 178, 1166, 1474, 2216 |
| KpnI | GGTACC | 1 cut(s) | 774 |
| Ksp22I | TGATCA | 3 cut(s) | 538, 1486, 2311 |
| KspI | CCGCGG | 1 cut(s) | 2490 |
| LguI | GCTCTTC | 2 cut(s) | 782, 1002 |
| LmnI | GCTCC | 5 cut(s) | 1357, 1840, 1965, 2016, 2281 |
| Lsp1109I | GCAGC | 2 cut(s) | 1393, 2363 |
| LweI | GCATC | 4 cut(s) | 189, 712, 1198, 1231 |
| MaeI | CTAG | 7 cut(s) | 33, 144, 1197, 1229, 1499, 1631, 1998 |
| MaeII | ACGT | 4 cut(s) | 280, 717, 1980, 2414 |
| MaeIII | GTNAC | 6 cut(s) | 40, 997, 1936, 2065, 2107, 2138 |
| MfeI | CAATTG | 2 cut(s) | 567, 1299 |
| MflI | RGATCY | 3 cut(s) | 366, 1048, 2281 |
| MhlI | GDGCHC | 4 cut(s) | 446, 794, 1788, 1884 |
| MlyI | GAGTC | 7 cut(s) | 436, 754, 1100, 1145, 1450, 1536, 1743 |
| MmeI | TCCRAC | 2 cut(s) | 787, 896 |
| Mph1103I | ATGCAT | 2 cut(s) | 1246, 2365 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1308, 2268 |
| MspA1I | CMGCKG | 2 cut(s) | 1329, 2489 |
| MspCI | CTTAAG | 1 cut(s) | 1160 |
| MspR9I | CCNGG | 5 cut(s) | 166, 252, 1264, 1536, 1964 |
| MunI | CAATTG | 2 cut(s) | 567, 1299 |
| MvaI | CCWGG | 1 cut(s) | 252 |
| MvnI | CGCG | 3 cut(s) | 1474, 1582, 2489 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 175, 1165, 1172, 1335, 2360, 2426 |
| NciI | CCSGG | 4 cut(s) | 166, 1264, 1536, 1964 |
| NcoI | CCATGG | 1 cut(s) | 2219 |
| NlaIV | GGNNCC | 2 cut(s) | 206, 772 |
| NmeAIII | GCCGAG | 1 cut(s) | 2446 |
| NmuCI | GTSAC | 4 cut(s) | 40, 997, 2065, 2138 |
| NsiI | ATGCAT | 2 cut(s) | 1246, 2365 |
| NspI | RCATGY | 3 cut(s) | 615, 1897, 2025 |
| NspV | TTCGAA | 1 cut(s) | 2479 |
| PagI | TCATGA | 2 cut(s) | 1102, 1804 |
| PciI | ACATGT | 2 cut(s) | 611, 2021 |
| PciSI | GCTCTTC | 2 cut(s) | 782, 1002 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1308, 2268 |
| PfoI | TCCNGGA | 2 cut(s) | 1534, 1962 |
| PinAI | ACCGGT | 2 cut(s) | 1928, 2396 |
| PkrI | GCNGC | 2 cut(s) | 1408, 2353 |
| PleI | GAGTC | 7 cut(s) | 435, 753, 1100, 1144, 1450, 1536, 1742 |
| PpsI | GAGTC | 7 cut(s) | 435, 753, 1100, 1144, 1450, 1536, 1742 |
| PpuMI | RGGWCCY | 1 cut(s) | 195 |
| PscI | ACATGT | 2 cut(s) | 611, 2021 |
| PshBI | ATTAAT | 1 cut(s) | 1032 |
| PsiI | TTATAA | 2 cut(s) | 815, 1905 |
| Psp124BI | GAGCTC | 1 cut(s) | 794 |
| Psp1406I | AACGTT | 1 cut(s) | 1980 |
| Psp5II | RGGWCCY | 1 cut(s) | 195 |
| Psp6I | CCWGG | 1 cut(s) | 250 |
| PspGI | CCWGG | 1 cut(s) | 250 |
| PspN4I | GGNNCC | 2 cut(s) | 206, 772 |
| PspPI | GGNCC | 7 cut(s) | 195, 236, 360, 434, 521, 1591, 1726 |
| PspPPI | RGGWCCY | 1 cut(s) | 195 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2139, 2171 |
| PstI | CTGCAG | 1 cut(s) | 1411 |
| PsuI | RGATCY | 3 cut(s) | 366, 1048, 2281 |
| RsaI | GTAC | 5 cut(s) | 772, 1471, 1863, 1952, 2357 |
| RsaNI | GTAC | 5 cut(s) | 771, 1470, 1862, 1951, 2356 |
| Rsr2I | CGGWCCG | 1 cut(s) | 360 |
| RsrII | CGGWCCG | 1 cut(s) | 360 |
| SacI | GAGCTC | 1 cut(s) | 794 |
| SacII | CCGCGG | 1 cut(s) | 2490 |
| SapI | GCTCTTC | 2 cut(s) | 782, 1002 |
| SatI | GCNGC | 2 cut(s) | 1407, 2352 |
| Sau96I | GGNCC | 7 cut(s) | 195, 236, 360, 434, 521, 1591, 1726 |
| SchI | GAGTC | 7 cut(s) | 436, 754, 1100, 1145, 1450, 1536, 1743 |
| ScrFI | CCNGG | 5 cut(s) | 166, 252, 1264, 1536, 1964 |
| SduI | GDGCHC | 4 cut(s) | 446, 794, 1788, 1884 |
| SfaNI | GCATC | 4 cut(s) | 189, 712, 1198, 1231 |
| SfcI | CTRYAG | 1 cut(s) | 1407 |
| Sfr303I | CCGCGG | 1 cut(s) | 2490 |
| SfuI | TTCGAA | 1 cut(s) | 2479 |
| SgrBI | CCGCGG | 1 cut(s) | 2490 |
| SinI | GGWCC | 6 cut(s) | 195, 236, 360, 434, 521, 1726 |
| SmlI | CTYRAG | 1 cut(s) | 1160 |
| SmoI | CTYRAG | 1 cut(s) | 1160 |
| SsiI | CCGC | 4 cut(s) | 1329, 1707, 2487, 2489 |
| SspI | AATATT | 1 cut(s) | 213 |
| SspMI | CTAG | 7 cut(s) | 33, 144, 1197, 1229, 1499, 1631, 1998 |
| SstI | GAGCTC | 1 cut(s) | 794 |
| StyD4I | CCNGG | 5 cut(s) | 164, 250, 1262, 1534, 1962 |
| StyI | CCWWGG | 3 cut(s) | 465, 774, 2219 |
| TaaI | ACNGT | 5 cut(s) | 81, 1118, 1235, 1309, 2151 |
| TaiI | ACGT | 4 cut(s) | 283, 720, 1983, 2417 |
| TaqI | TCGA | 9 cut(s) | 352, 548, 665, 794, 1109, 1732, 1773, 2389, 2479 |
| TaqII | GACCGA | 1 cut(s) | 377 |
| TatI | WGTACW | 1 cut(s) | 1950 |
| TscAI | CASTG | 3 cut(s) | 949, 1123, 1950 |
| TseFI | GTSAC | 4 cut(s) | 40, 997, 2065, 2138 |
| TseI | GCWGC | 2 cut(s) | 1406, 2351 |
| Tsp45I | GTSAC | 4 cut(s) | 40, 997, 2065, 2138 |
| TspDTI | ATGAA | 7 cut(s) | 497, 720, 900, 1337, 1982, 1985, 2108 |
| TspGWI | ACGGA | 2 cut(s) | 59, 1718 |
| TspRI | CASTG | 3 cut(s) | 949, 1123, 1950 |
| Vha464I | CTTAAG | 1 cut(s) | 1160 |
| VpaK11BI | GGWCC | 6 cut(s) | 195, 236, 360, 434, 521, 1726 |
| VspI | ATTAAT | 1 cut(s) | 1032 |
| XapI | RAATTY | 3 cut(s) | 354, 533, 761 |
| XbaI | TCTAGA | 1 cut(s) | 32 |
| XceI | RCATGY | 3 cut(s) | 615, 1897, 2025 |
| XmiI | GTMKAC | 1 cut(s) | 2131 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1308, 2268 |
| XspI | CTAG | 7 cut(s) | 33, 144, 1197, 1229, 1499, 1631, 1998 |
| Zsp2I | ATGCAT | 2 cut(s) | 1246, 2365 |