Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Forward (+)

15011079 .. 15015827

Gene Structure 4749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1872 bp

ATGTCCTCCGCCCTCATCGAACGCCCTAGAATCTTCTCGAAGCTTCTATGCCGGCTCCTCCTGACCCAAAACATGGGCGGCGGACCCCGGACCTTCCCCGGCGGCGTCAGCAAGTGGAAATGGAAGCGCACGCACGAGAAACGAGCCAAGGACAAAGAGAAACGCCTCCTGGGCCAAGAAAAGCAGCTCTACGAGGCCCGCCTCCGCTCCCAAATCCGGGGCAGCCTCGTCGGAAAACCCGACCCGCTTTCCGACCCGGGTCCGGAAACCAACCACAGCCCCATGGACCCCGACCGGCACATCAAATCCCTAGCCGATCGGTTCATGAAGGAAGGCGCCGAGGACTTGTGGAACGAAAAGGACGGCCCGGTTCACGAGCCGCCACCGGTCGGGTCGGACCGGCAATCCAGATCGATTCCGGCTGACCTGAGGAAGCTGATACCGAAAGGTCGAAATTTGGCGGGAAATGATAGAAATTTGAGTAGTTTGGGGTGTAGTTATGTTAGCAGTAGAAGCTATTCGGTGCCGAGTAGAGGGAGGTTTAGGAGGAACGATGATTCGAGTGACGATTCGGATTTCGATTCCGATAATGAGGCCATGCAGCCGTTTTGGGAGGGTAGAAATGGGAATGAGAAACCGAAATCGGAGAGAAATGTGAGGAATTTGGGGAGTAGTGCTTCTCTGGGGAAGTATGATAGGAAGGTGATTAAGAGGAGAGTGCCTCTTAATGCATTGGAAGATGAGTGTGATTTTGCGCAGCAGGTGGAATCGATTAGGTATGAGCTGGGTAAGAAAAAGGAGGTTGAAATTGAGAGAGGGGAGAGTGAAGAGGAGGGGTCGATTCTTAGTGAGAAGAGATTTGATGAGTGTGGGATATCCCCATTAACAGTCAAGGCATTGTCTTCTGCCGGGTATGTTCGAATGACTAGAGTTCAGGAGGCTGCAATTTTGGCTTGCCTTGAGGGAAAGGATGTTTTGGTCAAAGCTAAAACCGGCACTGGCAAAACTGCTGCCTTTTTGCTTCCGGCTATTGAAGCAGTTGTGAAGGGTATGGCTGGCAATACCAATCAACGGGTGTCTCCAATTTTTGTTCTTATCCTCTGCCCCACAAGAGAACTTGCAAGTCAGATAGCTGCAGAAACAAAAGTTTTGTTGAAGTACCATGAAGGCATAGGCATGCAAACATTAGTTGGAGGCACGAGATTTAAAGAGGACCAGAAACGTCTAGAATCAAATCCATGCCAGATAACAGTTGCCACTCCTGGCAGGTTGCTGGACCACATTGAGAATAGGTCTGGCTTGTCAGTGCGATTGATGGGACTGAAAATGTTAATACTTGATGAAGCTGGCCACTTACTAGACCTAGGATTTCGGAAGGACATAGAGAAAATCGTTGATTGTTTGCCTCGTAAGAGACAGTCCTTGCTCTTTACAGCAACACTCCCAAAAGAGGTTCGCCGCATATCACAGCTTGTTTTGAAAAAAGATCATGCTTTCATTGATACAGTGGGATTGGGCTGTGTGGAAACTCACGCTAAGGTTAAGCAGTCATATCTTGTTGCACCACATGACTTGCATTTTCAAATAGTTCACCATCTTTTGAAGGAGCATATCTGGCAATCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACGTCTGATGTATCAGCACGTGGAATGAACTATCCTGATGTTACATTGGTCATTCAGGTATTCGCAAGCCCGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

623

Amino Acids

70.19

Weight (kDa)

9.38

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	308 - 482	2.6e-08	Type III restriction enzyme, res subunit
DEAD	PF00270	309 - 487	3.1e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	533 - 618	2.2e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1632
AarI	CACCTGC	1 cut(s)	751
Acc16I	TGCGCA	1 cut(s)	756
Acc36I	ACCTGC	2 cut(s)	751, 1257
AccB1I	GGYRCC	2 cut(s)	335, 523
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	1348
AcsI	RAATTY	4 cut(s)	454, 475, 661, 1763
AcvI	CACGTG	1 cut(s)	1814
AcyI	GRCGYC	2 cut(s)	105, 336
AfaI	GTAC	2 cut(s)	1160, 1651
AfiI	CCNNNNNNNGG	8 cut(s)	73, 216, 217, 262, 389, 533, 1071, 1450
AgeI	ACCGGT	1 cut(s)	385
AgsI	TTSAA	7 cut(s)	806, 1034, 1156, 1480, 1583, 1603, 1768
AjnI	CCWGG	2 cut(s)	168, 1261
AluBI	AGCT	9 cut(s)	43, 187, 436, 516, 784, 986, 1133, 1346, 1471
AluI	AGCT	9 cut(s)	43, 187, 436, 516, 784, 986, 1133, 1346, 1471
Alw26I	GTCTC	2 cut(s)	1083, 1408
Ama87I	CYCGRG	2 cut(s)	256, 1864
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	5 cut(s)	172, 195, 364, 594, 1348
ApeKI	GCWGC	7 cut(s)	184, 222, 601, 757, 941, 1010, 1133
ApoI	RAATTY	4 cut(s)	454, 475, 661, 1763
AsiGI	ACCGGT	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	517
AspA2I	CCTAGG	1 cut(s)	1363
AspLEI	GCGC	3 cut(s)	129, 338, 757
AsuC2I	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 910
AsuHPI	GGTGA	3 cut(s)	715, 1583, 1614
AsuII	TTCGAA	1 cut(s)	919
AvaI	CYCGRG	2 cut(s)	256, 1864
AvaII	GGWCC	7 cut(s)	83, 90, 260, 286, 397, 1213, 1276
AvrII	CCTAGG	1 cut(s)	1363
AxyI	CCTNAGG	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	1350
BanI	GGYRCC	2 cut(s)	335, 523
BauI	CACGAG	3 cut(s)	134, 374, 1198
BbrPI	CACGTG	1 cut(s)	1814
BbsI	GAAGAC	1 cut(s)	894
BbvI	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
BccI	CCATC	2 cut(s)	1309, 1602
BceAI	ACGGC	2 cut(s)	379, 589
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	170, 1263
BcnI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 910
BcoDI	GTCTC	2 cut(s)	1083, 1408
BfaI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
BfmI	CTRYAG	1 cut(s)	1134
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	2 cut(s)	751, 1257
BglI	GCCNNNNNGGC	1 cut(s)	171
BlnI	CCTAGG	1 cut(s)	1363
Bme1390I	CCNGG	9 cut(s)	88, 99, 170, 218, 257, 258, 368, 910, 1263
Bme18I	GGWCC	7 cut(s)	83, 90, 260, 286, 397, 1213, 1276
BmeT110I	CYCGRG	2 cut(s)	256, 1864
BmiI	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 525
BmrFI	CCNGG	9 cut(s)	88, 99, 170, 218, 257, 258, 368, 910, 1263
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	894
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
Bpu10I	CCTNAGC	1 cut(s)	1536
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	1 cut(s)	980
BpuMI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 910
Bsa29I	ATCGAT	2 cut(s)	413, 770
BsaAI	YACGTR	1 cut(s)	1814
BsaHI	GRCGYC	2 cut(s)	105, 336
BsaJI	CCNNGG	9 cut(s)	86, 97, 147, 169, 217, 256, 282, 339, 1363
BsaWI	WCCGGW	2 cut(s)	262, 385
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 216, 217, 262, 389, 533, 1071, 1450
Bse118I	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
Bse1I	ACTGG	2 cut(s)	1003, 1660
Bse21I	CCTNAGG	1 cut(s)	428
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	170, 1263
BseCI	ATCGAT	2 cut(s)	413, 770
BseDI	CCNNGG	9 cut(s)	86, 97, 147, 169, 217, 256, 282, 339, 1363
BseGI	GGATG	2 cut(s)	976, 1667
BseLI	CCNNNNNNNGG	8 cut(s)	73, 216, 217, 262, 389, 533, 1071, 1450
BseMII	CTCAG	2 cut(s)	419, 1749
BseNI	ACTGG	2 cut(s)	1003, 1660
BseRI	GAGGAG	4 cut(s)	47, 727, 845, 1664
BseXI	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
BseYI	CCCAGC	1 cut(s)	784
Bsh1285I	CGRYCG	3 cut(s)	295, 319, 390
BshFI	GGCC	5 cut(s)	174, 197, 366, 596, 1350
BshNI	GGYRCC	2 cut(s)	335, 523
BshTI	ACCGGT	1 cut(s)	385
BshVI	ATCGAT	2 cut(s)	413, 770
BsiEI	CGRYCG	3 cut(s)	295, 319, 390
BsiHKCI	CYCGRG	2 cut(s)	256, 1864
BslFI	GGGAC	1 cut(s)	1332
BslI	CCNNNNNNNGG	8 cut(s)	73, 216, 217, 262, 389, 533, 1071, 1450
BsmAI	GTCTC	2 cut(s)	1083, 1408
BsmFI	GGGAC	1 cut(s)	1332
BsnI	GGCC	5 cut(s)	174, 197, 366, 596, 1350
BsoBI	CYCGRG	2 cut(s)	256, 1864
Bsp119I	TTCGAA	1 cut(s)	919
Bsp13I	TCCGGA	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	1649
Bsp143I	GATC	3 cut(s)	316, 410, 1486
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	5 cut(s)	174, 197, 366, 596, 1350
BspCNI	CTCAG	2 cut(s)	420, 1750
BspDI	ATCGAT	2 cut(s)	413, 770
BspEI	TCCGGA	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 525
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	2 cut(s)	751, 1257
BspT104I	TTCGAA	1 cut(s)	919
BspT107I	GGYRCC	2 cut(s)	335, 523
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
BsrGI	TGTACA	1 cut(s)	1649
BsrI	ACTGG	2 cut(s)	1003, 1660
BssAI	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
BssECI	CCNNGG	9 cut(s)	86, 97, 147, 169, 217, 256, 282, 339, 1363
BssMI	GATC	3 cut(s)	316, 410, 1486
BssNI	GRCGYC	2 cut(s)	105, 336
BssSI	CACGAG	3 cut(s)	134, 374, 1198
BssT1I	CCWWGG	3 cut(s)	147, 282, 1363
Bst2BI	CACGAG	3 cut(s)	134, 374, 1198
Bst2UI	CCWGG	2 cut(s)	170, 1263
Bst4CI	ACNGT	5 cut(s)	889, 1252, 1419, 1507, 1740
Bst6I	CTCTTC	2 cut(s)	822, 848
BstACI	GRCGYC	2 cut(s)	105, 336
BstAUI	TGTACA	1 cut(s)	1649
BstBAI	YACGTR	1 cut(s)	1814
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	8 cut(s)	53, 131, 199, 955, 1057, 1178, 1348, 1861
BstDEI	CTNAG	4 cut(s)	428, 845, 1536, 1758
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	976, 1667
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	129, 338, 757
BstKTI	GATC	3 cut(s)	319, 413, 1489
BstMAI	GTCTC	2 cut(s)	1083, 1408
BstMBI	GATC	3 cut(s)	316, 410, 1486
BstMCI	CGRYCG	3 cut(s)	295, 319, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 171, 513, 950, 1034, 1615
BstNI	CCWGG	2 cut(s)	170, 1263
BstNSI	RCATGY	1 cut(s)	1180
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSCI	CCNGG	9 cut(s)	86, 97, 168, 216, 255, 256, 366, 908, 1261
BstSFI	CTRYAG	1 cut(s)	1134
BstV1I	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
BstV2I	GAAGAC	1 cut(s)	894
Bsu15I	ATCGAT	2 cut(s)	413, 770
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	5 cut(s)	174, 197, 366, 596, 1350
BsuTUI	ATCGAT	2 cut(s)	413, 770
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	976, 1667
BtsIMutI	CAGTG	3 cut(s)	996, 1311, 1512
BveI	ACCTGC	2 cut(s)	751, 1257
Cac8I	GCNNGC	8 cut(s)	53, 131, 199, 955, 1057, 1178, 1348, 1861
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	3 cut(s)	129, 338, 757
Cfr10I	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
Cfr9I	CCCGGG	1 cut(s)	256
ClaI	ATCGAT	2 cut(s)	413, 770
CpoI	CGGWCCG	1 cut(s)	397
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	1159, 1650
CspAI	ACCGGT	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	1554, 1589
CspI	CGGWCCG	1 cut(s)	397
CviAII	CATG	9 cut(s)	73, 283, 325, 598, 1163, 1177, 1239, 1490, 1568
CviQI	GTAC	2 cut(s)	1159, 1650
DdeI	CTNAG	4 cut(s)	428, 845, 1536, 1758
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	3 cut(s)	318, 412, 1488
DpnII	GATC	3 cut(s)	316, 410, 1486
DraI	TTTAAA	1 cut(s)	1207
EaeI	YGGCCR	1 cut(s)	1348
Eam1104I	CTCTTC	2 cut(s)	822, 848
EarI	CTCTTC	2 cut(s)	822, 848
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	3 cut(s)	147, 282, 1363
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	7 cut(s)	83, 90, 260, 286, 397, 1213, 1276
Eco72I	CACGTG	1 cut(s)	1814
Eco81I	CCTNAGG	1 cut(s)	428
Eco88I	CYCGRG	2 cut(s)	256, 1864
EcoRI	GAATTC	1 cut(s)	1763
EcoRII	CCWGG	2 cut(s)	168, 1261
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	3 cut(s)	147, 282, 1363
EcoT22I	ATGCAT	1 cut(s)	733
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	3 cut(s)	147, 282, 1363
FaeI	CATG	9 cut(s)	76, 286, 328, 601, 1166, 1180, 1242, 1493, 1571
FaqI	GGGAC	1 cut(s)	1332
FatI	CATG	9 cut(s)	72, 282, 324, 597, 1162, 1176, 1238, 1489, 1567
FauI	CCCGC	3 cut(s)	206, 252, 454
FokI	GGATG	2 cut(s)	983, 1654
FspBI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
FspI	TGCGCA	1 cut(s)	756
GlaI	GCGC	3 cut(s)	128, 337, 756
GsaI	CCCAGC	1 cut(s)	788
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	174, 197, 366, 596, 1350
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	3 cut(s)	129, 338, 757
Hin1I	GRCGYC	2 cut(s)	105, 336
Hin1II	CATG	9 cut(s)	76, 286, 328, 601, 1166, 1180, 1242, 1493, 1571
Hin6I	GCGC	3 cut(s)	127, 336, 755
HinP1I	GCGC	3 cut(s)	127, 336, 755
HindIII	AAGCTT	1 cut(s)	41
HphI	GGTGA	3 cut(s)	715, 1583, 1614
Hpy166II	GTNNAC	2 cut(s)	373, 1591
Hpy8I	GTNNAC	2 cut(s)	373, 1591
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	9 cut(s)	103, 322, 326, 694, 1039, 1160, 1369, 1597, 1691
HpyCH4III	ACNGT	5 cut(s)	889, 1252, 1419, 1507, 1740
HpyCH4IV	ACGT	3 cut(s)	1222, 1796, 1813
HpyCH4V	TGCA	8 cut(s)	601, 731, 944, 1121, 1136, 1180, 1562, 1576
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 171, 513, 950, 1034, 1615
HpyF3I	CTNAG	4 cut(s)	428, 845, 1536, 1758
HpySE526I	ACGT	3 cut(s)	1222, 1796, 1813
Hsp92I	GRCGYC	2 cut(s)	105, 336
Hsp92II	CATG	9 cut(s)	76, 286, 328, 601, 1166, 1180, 1242, 1493, 1571
HspAI	GCGC	3 cut(s)	127, 336, 755
KasI	GGCGCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	316, 410, 1486
LmnI	GCTCC	3 cut(s)	60, 212, 1606
Lsp1109I	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
MaeI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
MaeII	ACGT	3 cut(s)	1222, 1796, 1813
MaeIII	GTNAC	4 cut(s)	563, 1663, 1792, 1834
MalI	GATC	3 cut(s)	318, 412, 1488
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	3 cut(s)	316, 410, 1486
MboII	GAAGA	6 cut(s)	25, 749, 839, 865, 894, 1676
MfeI	CAATTG	1 cut(s)	1781
MlsI	TGGCCA	1 cut(s)	1350
MluCI	AATT	8 cut(s)	454, 475, 661, 807, 945, 1083, 1763, 1781
MluNI	TGGCCA	1 cut(s)	1350
Mly113I	GGCGCC	1 cut(s)	336
MmeI	TCCRAC	4 cut(s)	211, 276, 375, 1171
Mox20I	TGGCCA	1 cut(s)	1350
Mph1103I	ATGCAT	1 cut(s)	733
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	1350
MseI	TTAA	6 cut(s)	708, 726, 884, 1206, 1331, 1542
MslI	CAYNNNNRTG	1 cut(s)	1175
Msp20I	TGGCCA	1 cut(s)	1350
MspR9I	CCNGG	9 cut(s)	88, 99, 170, 218, 257, 258, 368, 910, 1263
MunI	CAATTG	1 cut(s)	1781
MvaI	CCWGG	2 cut(s)	170, 1263
MwoI	GCNNNNNNNGC	6 cut(s)	108, 171, 513, 950, 1034, 1615
NaeI	GCCGGC	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 910
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	316, 410, 1486
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	9 cut(s)	76, 286, 328, 601, 1166, 1180, 1242, 1493, 1571
NlaIV	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 525
NmeAIII	GCCGAG	2 cut(s)	364, 552
NmuCI	GTSAC	1 cut(s)	563
NsbI	TGCGCA	1 cut(s)	756
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	1180
NspV	TTCGAA	1 cut(s)	919
PaeI	GCATGC	1 cut(s)	1180
PagI	TCATGA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	385
Ple19I	CGATCG	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	1814
PmlI	CACGTG	1 cut(s)	1814
Ppu21I	YACGTR	1 cut(s)	1814
PshAI	GACNNNNGTC	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	1632
Psp6I	CCWGG	2 cut(s)	168, 1261
PspCI	CACGTG	1 cut(s)	1814
PspFI	CCCAGC	1 cut(s)	784
PspGI	CCWGG	2 cut(s)	168, 1261
PspN4I	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 525
PstI	CTGCAG	1 cut(s)	1138
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	1160, 1651
RsaNI	GTAC	2 cut(s)	1159, 1650
RseI	CAYNNNNRTG	1 cut(s)	1175
Rsr2I	CGGWCCG	1 cut(s)	397
RsrII	CGGWCCG	1 cut(s)	397
SaqAI	TTAA	6 cut(s)	708, 726, 884, 1206, 1331, 1542
Sau3AI	GATC	3 cut(s)	316, 410, 1486
ScrFI	CCNGG	9 cut(s)	88, 99, 170, 218, 257, 258, 368, 910, 1263
SfcI	CTRYAG	1 cut(s)	1134
SfoI	GGCGCC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	919
SinI	GGWCC	7 cut(s)	83, 90, 260, 286, 397, 1213, 1276
SmaI	CCCGGG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	1175
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
SphI	GCATGC	1 cut(s)	1180
Sse9I	AATT	8 cut(s)	454, 475, 661, 807, 945, 1083, 1763, 1781
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
StyD4I	CCNGG	9 cut(s)	86, 97, 168, 216, 255, 256, 366, 908, 1261
StyI	CCWWGG	3 cut(s)	147, 282, 1363
TaaI	ACNGT	5 cut(s)	889, 1252, 1419, 1507, 1740
TaiI	ACGT	3 cut(s)	1225, 1799, 1816
TasI	AATT	8 cut(s)	454, 475, 661, 807, 945, 1083, 1763, 1781
TatI	WGTACW	1 cut(s)	1649
TauI	GCSGC	4 cut(s)	81, 105, 382, 1461
Tru1I	TTAA	6 cut(s)	708, 726, 884, 1206, 1331, 1542
Tru9I	TTAA	6 cut(s)	708, 726, 884, 1206, 1331, 1542
TscAI	CASTG	3 cut(s)	1003, 1311, 1512
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	7 cut(s)	184, 222, 601, 757, 941, 1010, 1133
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	8 cut(s)	313, 341, 1179, 1356, 1486, 1712, 1718, 1835
TspGWI	ACGGA	1 cut(s)	1679
TspMI	CCCGGG	1 cut(s)	256
TspRI	CASTG	3 cut(s)	1003, 1311, 1512
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	7 cut(s)	83, 90, 260, 286, 397, 1213, 1276
XapI	RAATTY	4 cut(s)	454, 475, 661, 1763
XbaI	TCTAGA	2 cut(s)	1225, 1724
XceI	RCATGY	1 cut(s)	1180
XmaI	CCCGGG	1 cut(s)	256
XmaJI	CCTAGG	1 cut(s)	1363
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.