Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Forward (+)

15727485 .. 15732780

Gene Structure 5296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGTCCTCCGCCCTCATCGAACGCCCTAGAATCTTCTCGAAGCTTCTATGCCGGCTCATCCTGACCCAAAACATGGGCGGCGGACCCCGGACCTTCCCCGGCGGCGTCAGCAAGTGGAAATGGAAGCGCACGCACGAGAAACGAGCCAAGGACAAAGAGAAACGCCTCTTGGACCAAGAAAAGCAGCTCTACGAGGCCCGCCTCCGCTCCCAAATCCGGGGCAGCCTCGTCGGAAAACCCGACCCGCTTTCCGACCCGGGTCCGGAAACCAACCACAGCCCCATGGACCCCGACCGGCACATCAAATCCCTAGCCGATCGGTTCATGAAGGAAGGCGCCGAGGACTTGTGGAACGAAAAGGACGGCCCGGTTCACGAGCCGCCCCCGCAGCCGCCGGTCGGGTCGGACCGGCTGTCCAGATCGATTCCGGCTGACCTGAGGAAGCTGATACCGAAAGGTCGAAATTTGGCGGGAAATGATAGAAATTTGAGTAGTTTGGGGTGTAGTTATGTTAGCAGTAGAAGCTATTCGGTGCAGAGTAGAGGGAGGTTTAGGAGGAACGATGATTCGAGTGACGATTCGGATTTCGATTCCGATAATGAGGCCATGCAGCCGTTTTGGGAGGGTAGAAATGGGAATGAGAAACCGAAATTGGAGAGAAATGTGAGGAATTTGGGGAGTAGTGCTTCTCTGGGGAAGTATGATAGGAAGGTGATTAAGAGGAGAGTGCCTCTTAATGCATTGGAAGATGAGTGTGATTTTGCGCAGCAGGTGGAATCGATTAGGTATGAGCTGAGTAAGAAAAAGGAGGTTGAAATTGAAAGAGGGGACAGTGAAGAGGAGGGGTCGATTCTTAGTGAGAAGAGATTTGATGAGTGTGGGATATCTCCATTTACAGTCAAGGCATTGTCTTCTGCTGGGTATGTTCGAATGACTAGAGTTCAGGAGGCTGCAATTTCGGCTTGCCTTGAGGGAAAGGATGTTTTGGTCAAAGCTAAAACCGGCACTGGCAAAACTGCTGCCTTTTTGCTTCCGGCTATTGAAGCAGTTGTGAAGGGTATGGCTGGCAATACCAATCAACGGGTGTCTCCAATTTTTGTTCTTATCCTCTGCCCCACAAGAGAACTTGCAAGTCAGATAGCTGCAGAAACAAATGTTTTGTTGAAGTACCATGAAGGCATAGGCATGCAAGCATTAGTTGGAGGCACGAGATTTAAAGAGGACCAGAAACGTCTAGAATCAAATCCATGCCAGATAATAGTTGCAACTCCTGGCAGGTTGCTGGACCACATTGAGAATAGGTCTGGCTTGTCAGTGCGATTGATGGGACTGAAAATGTTAATACTTGATGAAGCTGGCCACTTACTAGACCTAGGATTTCGGAAGGACATAGAGAAAATCGTTGATTGTTTGCCTCGTAAGAGACAGTCCTTGCTCTTTACTGCAACACTCCCAAAAGAGGTTCGCCGCATATCACAGCTTGTTTTGAAAAAAGATCATGCTTTCATTGATACAGTGGGATTGGGCTGTGTGGAAACTCATGCTAAGGTTAAGCAGTCATATCTTGTTGCACCACATGACTTGCATTTTCAAATAGTTCACCATCTTTTGAAGGAGCATATCTGGCAATCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATCCTGATGTTACATTGGTCATTCAGGTGGGTATTCCTTCTGACCGGGAACAATATATACACCGTCTTGGAAGAACAGGACGGGAAGGTAAAGAAGGAGAAGGCATATTGTTGCTTGCACCATGGGAGGAGTATTTTCTGGAGGAATTAAAAGATTTGCCCCTTGAAAAATTTCCTTCACTGCGATTGGATCCAGGCACTAAACTCAAGATTGAGGATTCAATGACCAAGGTTGACAGTAGTGTCAAGGAATCCGCCTATCATGCTTGGCTTGGCTACTACAACTCGATCAGGGAAACTGTAGCATACAATTGGAACAAGAATAAGCAACCTGCTGATTGCGGTGGCAGGGATATGAAGACAAGAAGTGAAGGACCTTCATTCTCGTTTCAAGTCGTAAAACAGAGACGACCAACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

751

Amino Acids

84.95

Weight (kDa)

9.19

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	311 - 485	2.5e-08	Type III restriction enzyme, res subunit
DEAD	PF00270	312 - 490	9e-45	DEAD/DEAH box helicase
Helicase_C	PF00271	536 - 641	1.9e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1641
AarI	CACCTGC	1 cut(s)	760
AasI	GACNNNNNNGTC	1 cut(s)	2075
Acc16I	TGCGCA	1 cut(s)	765
Acc36I	ACCTGC	3 cut(s)	760, 1266, 2173
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	262
AclWI	GGATC	2 cut(s)	2018, 2031
AcoI	YGGCCR	1 cut(s)	1357
AcsI	RAATTY	5 cut(s)	463, 484, 670, 1772, 2003
AcvI	CACGTG	1 cut(s)	1823
AcyI	GRCGYC	2 cut(s)	105, 336
AfaI	GTAC	2 cut(s)	1169, 1660
AfiI	CCNNNNNNNGG	7 cut(s)	73, 216, 217, 262, 398, 1080, 1459
AhdI	GACNNNNNGTC	1 cut(s)	412
AjnI	CCWGG	2 cut(s)	1270, 2026
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 635, 667
AluBI	AGCT	9 cut(s)	43, 187, 445, 525, 793, 995, 1142, 1355, 1480
AluI	AGCT	9 cut(s)	43, 187, 445, 525, 793, 995, 1142, 1355, 1480
Alw26I	GTCTC	3 cut(s)	1092, 1417, 2233
AlwI	GGATC	2 cut(s)	2018, 2031
Ama87I	CYCGRG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	4 cut(s)	195, 364, 603, 1357
ApeKI	GCWGC	8 cut(s)	184, 222, 388, 610, 766, 950, 1019, 1142
ApoI	RAATTY	5 cut(s)	463, 484, 670, 1772, 2003
Asp700I	GAANNNNTTC	2 cut(s)	526, 2004
AspA2I	CCTAGG	1 cut(s)	1372
AspLEI	GCGC	3 cut(s)	129, 338, 766
AsuC2I	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1880
AsuHPI	GGTGA	3 cut(s)	724, 1592, 1623
AsuII	TTCGAA	1 cut(s)	928
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	9 cut(s)	83, 90, 172, 260, 286, 406, 1222, 1285, 2207
AvrII	CCTAGG	1 cut(s)	1372
AxyI	CCTNAGG	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	1359
BamHI	GGATCC	1 cut(s)	2023
BanI	GGYRCC	1 cut(s)	335
BauI	CACGAG	3 cut(s)	134, 374, 1207
BbrPI	CACGTG	1 cut(s)	1823
BbsI	GAAGAC	2 cut(s)	903, 2198
BbvI	GCAGC	8 cut(s)	196, 234, 400, 622, 778, 937, 1006, 1129
BccI	CCATC	2 cut(s)	1318, 1611
BceAI	ACGGC	2 cut(s)	379, 598
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	1272, 2028
BcnI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1880
BcoDI	GTCTC	3 cut(s)	1092, 1417, 2233
BfaI	CTAG	7 cut(s)	27, 311, 936, 1235, 1367, 1373, 1734
BfmI	CTRYAG	2 cut(s)	1143, 2133
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	3 cut(s)	760, 1266, 2173
BlnI	CCTAGG	1 cut(s)	1372
Bme1390I	CCNGG	9 cut(s)	88, 99, 218, 257, 258, 368, 1272, 1880, 2028
Bme18I	GGWCC	9 cut(s)	83, 90, 172, 260, 286, 406, 1222, 1285, 2207
BmeRI	GACNNNNNGTC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	5 cut(s)	85, 261, 288, 337, 2025
BmrFI	CCNGG	9 cut(s)	88, 99, 218, 257, 258, 368, 1272, 1880, 2028
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	2 cut(s)	903, 2198
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpmI	CTGGAG	1 cut(s)	1994
Bpu10I	CCTNAGC	1 cut(s)	1545
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	2 cut(s)	989, 2024
BpuMI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1880
Bsa29I	ATCGAT	2 cut(s)	422, 779
BsaAI	YACGTR	1 cut(s)	1823
BsaHI	GRCGYC	2 cut(s)	105, 336
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 216, 217, 262, 398, 1080, 1459
Bse118I	RCCGGY	5 cut(s)	51, 294, 394, 408, 1001
Bse1I	ACTGG	3 cut(s)	1012, 1669, 2254
Bse21I	CCTNAGG	1 cut(s)	437
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	1272, 2028
BseCI	ATCGAT	2 cut(s)	422, 779
BseGI	GGATG	3 cut(s)	57, 985, 1676
BseLI	CCNNNNNNNGG	7 cut(s)	73, 216, 217, 262, 398, 1080, 1459
BseMII	CTCAG	3 cut(s)	428, 785, 1758
BseNI	ACTGG	3 cut(s)	1012, 1669, 2254
BseRI	GAGGAG	4 cut(s)	736, 854, 1673, 1976
BseXI	GCAGC	8 cut(s)	196, 234, 400, 622, 778, 937, 1006, 1129
BseYI	CCCAGC	1 cut(s)	917
BsgI	GTGCAG	1 cut(s)	554
Bsh1285I	CGRYCG	3 cut(s)	295, 319, 399
BshFI	GGCC	4 cut(s)	197, 366, 605, 1359
BshNI	GGYRCC	1 cut(s)	335
BshVI	ATCGAT	2 cut(s)	422, 779
BsiEI	CGRYCG	3 cut(s)	295, 319, 399
BsiHKCI	CYCGRG	1 cut(s)	256
BslFI	GGGAC	2 cut(s)	842, 1341
BslI	CCNNNNNNNGG	7 cut(s)	73, 216, 217, 262, 398, 1080, 1459
BsmAI	GTCTC	3 cut(s)	1092, 1417, 2233
BsmBI	CGTCTC	1 cut(s)	2233
BsmFI	GGGAC	2 cut(s)	842, 1341
BsnI	GGCC	4 cut(s)	197, 366, 605, 1359
BsoBI	CYCGRG	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	928
Bsp13I	TCCGGA	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	1658
Bsp143I	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
Bsp19I	CCATGG	2 cut(s)	282, 1955
BspANI	GGCC	4 cut(s)	197, 366, 605, 1359
BspCNI	CTCAG	3 cut(s)	429, 786, 1759
BspDI	ATCGAT	2 cut(s)	422, 779
BspEI	TCCGGA	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	5 cut(s)	85, 261, 288, 337, 2025
BspMAI	CTGCAG	1 cut(s)	1147
BspMI	ACCTGC	3 cut(s)	760, 1266, 2173
BspPI	GGATC	2 cut(s)	2018, 2031
BspT104I	TTCGAA	1 cut(s)	928
BspT107I	GGYRCC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	5 cut(s)	51, 294, 394, 408, 1001
BsrGI	TGTACA	1 cut(s)	1658
BsrI	ACTGG	3 cut(s)	1012, 1669, 2254
BssAI	RCCGGY	5 cut(s)	51, 294, 394, 408, 1001
BssMI	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
BssNI	GRCGYC	2 cut(s)	105, 336
BssSI	CACGAG	3 cut(s)	134, 374, 1207
BssT1I	CCWWGG	5 cut(s)	147, 282, 1372, 1955, 2061
Bst2BI	CACGAG	3 cut(s)	134, 374, 1207
Bst2UI	CCWGG	2 cut(s)	1272, 2028
Bst4CI	ACNGT	8 cut(s)	833, 898, 1428, 1516, 1749, 1898, 2072, 2134
Bst6I	CTCTTC	2 cut(s)	831, 857
BstACI	GRCGYC	2 cut(s)	105, 336
BstAUI	TGTACA	1 cut(s)	1658
BstBAI	YACGTR	1 cut(s)	1823
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	9 cut(s)	53, 131, 199, 964, 1066, 1187, 1191, 1357, 1950
BstDEI	CTNAG	5 cut(s)	437, 794, 854, 1545, 1767
BstDSI	CCRYGG	2 cut(s)	282, 1955
BstF5I	GGATG	3 cut(s)	57, 985, 1676
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	129, 338, 766
BstKTI	GATC	5 cut(s)	319, 422, 1498, 2026, 2124
BstMAI	GTCTC	3 cut(s)	1092, 1417, 2233
BstMBI	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
BstMCI	CGRYCG	3 cut(s)	295, 319, 399
BstMWI	GCNNNNNNNGC	8 cut(s)	108, 385, 388, 522, 959, 1043, 1624, 2096
BstNI	CCWGG	2 cut(s)	1272, 2028
BstNSI	RCATGY	1 cut(s)	1189
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSCI	CCNGG	9 cut(s)	86, 97, 216, 255, 256, 366, 1270, 1878, 2026
BstSFI	CTRYAG	2 cut(s)	1143, 2133
BstV1I	GCAGC	8 cut(s)	196, 234, 400, 622, 778, 937, 1006, 1129
BstV2I	GAAGAC	2 cut(s)	903, 2198
BstX2I	RGATCY	1 cut(s)	2023
BstYI	RGATCY	1 cut(s)	2023
Bsu15I	ATCGAT	2 cut(s)	422, 779
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	4 cut(s)	197, 366, 605, 1359
BsuTUI	ATCGAT	2 cut(s)	422, 779
BtgI	CCRYGG	2 cut(s)	282, 1955
BtsCI	GGATG	3 cut(s)	57, 985, 1676
BtsI	GCAGTG	1 cut(s)	2012
BtsIMutI	CAGTG	5 cut(s)	838, 1005, 1320, 1521, 2012
BveI	ACCTGC	3 cut(s)	760, 1266, 2173
Cac8I	GCNNGC	9 cut(s)	53, 131, 199, 964, 1066, 1187, 1191, 1357, 1950
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	3 cut(s)	129, 338, 766
Cfr10I	RCCGGY	5 cut(s)	51, 294, 394, 408, 1001
Cfr9I	CCCGGG	1 cut(s)	256
ClaI	ATCGAT	2 cut(s)	422, 779
CpoI	CGGWCCG	1 cut(s)	406
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	1168, 1659
CspCI	CAANNNNNGTGG	2 cut(s)	1563, 1598
CspI	CGGWCCG	1 cut(s)	406
CviQI	GTAC	2 cut(s)	1168, 1659
DdeI	CTNAG	5 cut(s)	437, 794, 854, 1545, 1767
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	5 cut(s)	318, 421, 1497, 2025, 2123
DpnII	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
DraI	TTTAAA	1 cut(s)	1216
DrdI	GACNNNNNNGTC	1 cut(s)	2075
DriI	GACNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	2075
EaeI	YGGCCR	1 cut(s)	1357
Eam1104I	CTCTTC	2 cut(s)	831, 857
Eam1105I	GACNNNNNGTC	1 cut(s)	412
EarI	CTCTTC	2 cut(s)	831, 857
EciI	GGCGGA	2 cut(s)	96, 2077
Eco130I	CCWWGG	5 cut(s)	147, 282, 1372, 1955, 2061
Eco32I	GATATC	1 cut(s)	885
Eco47I	GGWCC	9 cut(s)	83, 90, 172, 260, 286, 406, 1222, 1285, 2207
Eco72I	CACGTG	1 cut(s)	1823
Eco81I	CCTNAGG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	2207
EcoRI	GAATTC	1 cut(s)	1772
EcoRII	CCWGG	2 cut(s)	1270, 2026
EcoRV	GATATC	1 cut(s)	885
EcoT14I	CCWWGG	5 cut(s)	147, 282, 1372, 1955, 2061
EcoT22I	ATGCAT	1 cut(s)	742
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	5 cut(s)	147, 282, 1372, 1955, 2061
Esp3I	CGTCTC	1 cut(s)	2233
FaqI	GGGAC	2 cut(s)	842, 1341
FauI	CCCGC	4 cut(s)	206, 252, 393, 463
FokI	GGATG	3 cut(s)	44, 992, 1663
FspBI	CTAG	7 cut(s)	27, 311, 936, 1235, 1367, 1373, 1734
FspI	TGCGCA	1 cut(s)	765
GlaI	GCGC	3 cut(s)	128, 337, 765
GsaI	CCCAGC	1 cut(s)	921
GsuI	CTGGAG	1 cut(s)	1994
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	4 cut(s)	197, 366, 605, 1359
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	3 cut(s)	129, 338, 766
Hin1I	GRCGYC	2 cut(s)	105, 336
Hin6I	GCGC	3 cut(s)	127, 336, 764
HinP1I	GCGC	3 cut(s)	127, 336, 764
HincII	GTYRAC	1 cut(s)	2068
HindII	GTYRAC	1 cut(s)	2068
HindIII	AAGCTT	1 cut(s)	41
HphI	GGTGA	3 cut(s)	724, 1592, 1623
Hpy166II	GTNNAC	3 cut(s)	373, 1600, 2068
Hpy8I	GTNNAC	3 cut(s)	373, 1600, 2068
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	8 cut(s)	833, 898, 1428, 1516, 1749, 1898, 2072, 2134
HpyCH4IV	ACGT	2 cut(s)	1231, 1822
HpyF10VI	GCNNNNNNNGC	8 cut(s)	108, 385, 388, 522, 959, 1043, 1624, 2096
HpyF3I	CTNAG	5 cut(s)	437, 794, 854, 1545, 1767
HpySE526I	ACGT	2 cut(s)	1231, 1822
Hsp92I	GRCGYC	2 cut(s)	105, 336
HspAI	GCGC	3 cut(s)	127, 336, 764
KasI	GGCGCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
LmnI	GCTCC	2 cut(s)	212, 1615
Lsp1109I	GCAGC	8 cut(s)	196, 234, 400, 622, 778, 937, 1006, 1129
MaeI	CTAG	7 cut(s)	27, 311, 936, 1235, 1367, 1373, 1734
MaeII	ACGT	2 cut(s)	1231, 1822
MaeIII	GTNAC	4 cut(s)	572, 1672, 1801, 1843
MalI	GATC	5 cut(s)	318, 421, 1497, 2025, 2123
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
MboII	GAAGA	8 cut(s)	25, 758, 848, 874, 903, 1685, 1917, 2203
MfeI	CAATTG	2 cut(s)	1790, 2143
MflI	RGATCY	1 cut(s)	2023
MlsI	TGGCCA	1 cut(s)	1359
MluNI	TGGCCA	1 cut(s)	1359
Mly113I	GGCGCC	1 cut(s)	336
MmeI	TCCRAC	4 cut(s)	211, 276, 384, 1180
Mox20I	TGGCCA	1 cut(s)	1359
Mph1103I	ATGCAT	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	2 cut(s)	526, 2004
MscI	TGGCCA	1 cut(s)	1359
MseI	TTAA	6 cut(s)	717, 735, 1215, 1340, 1551, 1982
MslI	CAYNNNNRTG	2 cut(s)	1184, 1859
Msp20I	TGGCCA	1 cut(s)	1359
MspR9I	CCNGG	9 cut(s)	88, 99, 218, 257, 258, 368, 1272, 1880, 2028
MunI	CAATTG	2 cut(s)	1790, 2143
MvaI	CCWGG	2 cut(s)	1272, 2028
MwoI	GCNNNNNNNGC	8 cut(s)	108, 385, 388, 522, 959, 1043, 1624, 2096
NaeI	GCCGGC	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1880
NcoI	CCATGG	2 cut(s)	282, 1955
NdeII	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
NgoMIV	GCCGGC	1 cut(s)	51
NlaIV	GGNNCC	5 cut(s)	85, 261, 288, 337, 2025
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	572
NsbI	TGCGCA	1 cut(s)	765
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	1189
NspV	TTCGAA	1 cut(s)	928
PaeI	GCATGC	1 cut(s)	1189
PagI	TCATGA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	2 cut(s)	526, 2004
PflMI	CCANNNNNTGG	1 cut(s)	73
Ple19I	CGATCG	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	1823
PmlI	CACGTG	1 cut(s)	1823
Ppu21I	YACGTR	1 cut(s)	1823
PpuMI	RGGWCCY	1 cut(s)	2207
PshAI	GACNNNNGTC	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	1641
Psp5II	RGGWCCY	1 cut(s)	2207
Psp6I	CCWGG	2 cut(s)	1270, 2026
PspCI	CACGTG	1 cut(s)	1823
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	2 cut(s)	1270, 2026
PspN4I	GGNNCC	5 cut(s)	85, 261, 288, 337, 2025
PspPPI	RGGWCCY	1 cut(s)	2207
PsrI	GAACNNNNNNTAC	2 cut(s)	1875, 1907
PstI	CTGCAG	1 cut(s)	1147
PsuI	RGATCY	1 cut(s)	2023
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	1169, 1660
RsaNI	GTAC	2 cut(s)	1168, 1659
RseI	CAYNNNNRTG	2 cut(s)	1184, 1859
Rsr2I	CGGWCCG	1 cut(s)	406
RsrII	CGGWCCG	1 cut(s)	406
SaqAI	TTAA	6 cut(s)	717, 735, 1215, 1340, 1551, 1982
Sau3AI	GATC	5 cut(s)	316, 419, 1495, 2023, 2121
ScrFI	CCNGG	9 cut(s)	88, 99, 218, 257, 258, 368, 1272, 1880, 2028
SfcI	CTRYAG	2 cut(s)	1143, 2133
SfoI	GGCGCC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	928
SinI	GGWCC	9 cut(s)	83, 90, 172, 260, 286, 406, 1222, 1285, 2207
SmaI	CCCGGG	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	1184, 1859
SmlI	CTYRAG	2 cut(s)	968, 2039
SmoI	CTYRAG	2 cut(s)	968, 2039
SphI	GCATGC	1 cut(s)	1189
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	7 cut(s)	27, 311, 936, 1235, 1367, 1373, 1734
StyD4I	CCNGG	9 cut(s)	86, 97, 216, 255, 256, 366, 1270, 1878, 2026
StyI	CCWWGG	5 cut(s)	147, 282, 1372, 1955, 2061
TaaI	ACNGT	8 cut(s)	833, 898, 1428, 1516, 1749, 1898, 2072, 2134
TaiI	ACGT	2 cut(s)	1234, 1825
TatI	WGTACW	1 cut(s)	1658
TauI	GCSGC	5 cut(s)	81, 105, 382, 394, 1470
Tru1I	TTAA	6 cut(s)	717, 735, 1215, 1340, 1551, 1982
Tru9I	TTAA	6 cut(s)	717, 735, 1215, 1340, 1551, 1982
TscAI	CASTG	5 cut(s)	838, 1012, 1320, 1521, 2019
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	8 cut(s)	184, 222, 388, 610, 766, 950, 1019, 1142
Tsp45I	GTSAC	1 cut(s)	572
TspGWI	ACGGA	1 cut(s)	1688
TspMI	CCCGGG	1 cut(s)	256
TspRI	CASTG	5 cut(s)	838, 1012, 1320, 1521, 2019
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	9 cut(s)	83, 90, 172, 260, 286, 406, 1222, 1285, 2207
XapI	RAATTY	5 cut(s)	463, 484, 670, 1772, 2003
XbaI	TCTAGA	2 cut(s)	1234, 1733
XceI	RCATGY	1 cut(s)	1189
XmaI	CCCGGG	1 cut(s)	256
XmaJI	CCTAGG	1 cut(s)	1372
XmnI	GAANNNNTTC	2 cut(s)	526, 2004
XspI	CTAG	7 cut(s)	27, 311, 936, 1235, 1367, 1373, 1734
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.