Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Forward (+)

3503777 .. 3507807

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0048400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGAGGCAGCGCGGGGGTTGGCTTCTTTGGACAACCTTGGTGATACTTGGTCTCCACTGTCTCTCGGTTGATGCTGGAAACTACAACAACAACACAAGATTGGGACCGCTGAACAGGACAAGTAATATCCCCAAAACACAAGATCGGGACGATGCGGTGAAGATCACATATCCTCCTAAACAGGTTGTGTTGGATAATGGCCTTGTGCAACTCACATTTTCTAATCCTGGTGGACAAATTACTGGAATCAAATATCATGTAATTGATAACTTACTCAAAAACAAGACCACGCAAACAGCGTACTGGGATGTGATGTGGAGGGGTCAGCTTCACGGATTTGACGGAAAAGAATTTAAAGTCATTACGGAGAGGGAAGACCAAGTTGAAGTTTCTTTCATCAGTACGTACAATCCTTCCTTCTCTAATGACTCGATGATCCCCTTGACTGTCAACAAAAGGTACATAATGCAGCGTGGTCGTTCGGGGTTCTATGCATACGTCATCTTCCAGCGAGATGAAGGGTGGCCGGAGCTGGCCATAAATGACGTTCGACTAACTTTCAAGCTTAACCAAGATCAATTTAACTACATGGCGGTGTCGGATACTAGAAGAAGGTTCATGCCAACAGCTGACGACCGAAACCTAGGTCAGCAACTTGCCTATCCTGAAGCTAAGCTTTTAAACAATGCAACAAGCAATCCTCTCTTTCATGGCGAAGTGGATGACAAGTACCAGTACTCAAGTGATGACAAAAATGGCAAAGTCCATGGCTGGATTAGTACCAAGTCATCTGTGGGATTTTGGTTGATCACACCAAGTACTGAGTTTCGTGCTGGTGGACCTCCGAAGCAGGACCTCACCTCCCACGTCGGGCCGACGACAATGTGTGTGTTCTCTAGTAGTCATTACGCTACAGAACAACTTTGTTTGAAATTCAAACAAGGTGAAGCATGGAAAAAGGTTTATGGACCTGTGTATGTGTATCTTAATCTAGCTGGTCCAACCAGGGATCCCACTACTACACTTTGGCACGACGCTAAGCAACAGATGCATGAAGAGGTGAGAAGCTGGCCTTACAATTTTACTCGATGCCCAGATTTTCCTGTTTCGGAGCAACGAGGATCAGTTTTTGGAAATTTACAAGTAAATGATAGGTACATTAACAGCACCAGCCTTGTTCCGGCAAGCTCGGCTTATGTGGGATTGGCCGCACCTGGAGAAGTGGGATCATGGCAAACAGAAAGCAAGGGATACCAGTTTTGGACTCGAGCGGATGCAAAAGGCGACTTTGTCATCAAACATGTTCGACCTGGGAACTATAATTTGTATGCATGGGTTCCCGGGATTCTTGGAGATTACAAATATGAGGCCGAGATTAGTATTAAACCAGGAAGTCGATTCGAGTTGGATAAGCTTACTTATTCGCCTCCAAGAATTGGTCCTACATTATGGGAAATCGGCATCCCTGATCGAAGTGCTGCTGAGTTTTACATACCGGATCCATATCCAACTCTCATGAACAAACTTGATAACAATAATCACTCGGATGCCTCGGACAAGTTCAGGCAATATGGGATCTGGGGACGTTATGGAGAGTTATACCCTGACCATGATCTAGTCTACACTGTTGGTGTTAGCGATTATCGTCATGATTGGTTTTATGCTCATGTGACTAGGAATACAGGAAACGTCTTGGTCGGAACCACATGGCAGATACAATTTAAGCTTACTAATATGACAGCTCCTGGAGATTATAAGCTCCGATTGGCATTGGCCTCCGCCAACTATGCAGAGTTGGAGGTTCGATTTAACAATGAAAGCAAGGCACCTCTTTTCTCTACAGGGCGGATAGGAGAGGACAATGCTATAGCAAGACATGGAATTCATGGTTTATATTGGTTGTTCGATGTTAATGTACCAAGGTCTCAACTGCATGAAGGAAACAACACACTCTATCTTACTCAGACAAGAGGCGGAAATATGTTCGTAGGAGTCATGTATGACTACATCAGACTAGAAGGACCTCCATTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

678

Amino Acids

77.3

Weight (kDa)

7.68

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	48 - 240	4.9e-61	Rhamnogalacturonate lyase family
fn3_3	PF14686	396 - 466	3.8e-26	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	482 - 672	1.3e-50	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1755
AccB1I	GGYRCC	1 cut(s)	1825
AccB7I	CCANNNNNTGG	1 cut(s)	1436
AccBSI	CCGCTC	1 cut(s)	1271
AccI	GTMKAC	1 cut(s)	1620
AccII	CGCG	1 cut(s)	12
AciI	CCGC	9 cut(s)	12, 107, 155, 593, 1209, 1271, 1779, 1846, 1974
AclWI	GGATC	8 cut(s)	430, 1004, 1017, 1129, 1234, 1493, 1506, 1583
AcoI	YGGCCR	3 cut(s)	524, 534, 1206
AcsI	RAATTY	4 cut(s)	350, 932, 1135, 1881
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	3 cut(s)	870, 1180, 1436
AflIII	ACRYGT	1 cut(s)	1300
AgsI	TTSAA	4 cut(s)	386, 562, 931, 937
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	6 cut(s)	226, 1004, 1213, 1309, 1387, 1744
Alw26I	GTCTC	3 cut(s)	56, 65, 1929
AlwI	GGATC	8 cut(s)	430, 1004, 1017, 1129, 1234, 1493, 1506, 1583
AlwNI	CAGNNNCTG	1 cut(s)	1745
Ama87I	CYCGRG	2 cut(s)	1266, 1340
AoxI	GGCC	8 cut(s)	199, 524, 534, 872, 1070, 1206, 1368, 1773
ApeKI	GCWGC	3 cut(s)	7, 469, 1478
ApoI	RAATTY	4 cut(s)	350, 932, 1135, 1881
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
AspA2I	CCTAGG	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	8 cut(s)	104, 839, 853, 872, 968, 998, 1439, 2021
AsuC2I	CCSGG	2 cut(s)	1341, 1342
AsuHPI	GGTGA	5 cut(s)	52, 169, 850, 956, 1072
AvaI	CYCGRG	2 cut(s)	1266, 1340
AvaII	GGWCC	7 cut(s)	104, 839, 853, 968, 998, 1439, 2021
AvrII	CCTAGG	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	536
BamHI	GGATCC	2 cut(s)	1009, 1498
BanI	GGYRCC	1 cut(s)	1825
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	19, 481, 1465
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	6 cut(s)	228, 1006, 1215, 1311, 1389, 1746
BciVI	GTATCC	2 cut(s)	595, 1244
BclI	TGATCA	1 cut(s)	807
BcnI	CCSGG	2 cut(s)	1341, 1342
BcoDI	GTCTC	3 cut(s)	56, 65, 1929
BfaI	CTAG	7 cut(s)	606, 644, 897, 992, 1616, 1674, 2015
BfmI	CTRYAG	3 cut(s)	912, 1839, 1866
BfuI	GTATCC	2 cut(s)	595, 1244
BisI	GCNGC	4 cut(s)	8, 470, 1209, 1479
BlnI	CCTAGG	1 cut(s)	643
BlpI	GCTNAGC	2 cut(s)	672, 1038
BlsI	GCNGC	4 cut(s)	9, 471, 1210, 1480
BmcAI	AGTACT	2 cut(s)	737, 820
Bme1390I	CCNGG	8 cut(s)	228, 1006, 1215, 1311, 1341, 1342, 1389, 1746
Bme18I	GGWCC	7 cut(s)	104, 839, 853, 968, 998, 1439, 2021
BmeT110I	CYCGRG	2 cut(s)	1266, 1340
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	8 cut(s)	104, 839, 853, 872, 968, 998, 1439, 2021
BmiI	GGNNCC	6 cut(s)	105, 1011, 1338, 1500, 1702, 1827
BmrFI	CCNGG	8 cut(s)	228, 1006, 1215, 1311, 1341, 1342, 1389, 1746
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	7 cut(s)	61, 142, 1038, 1079, 1264, 1470, 1537
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	2 cut(s)	1236, 1767
Bpu1102I	GCTNAGC	2 cut(s)	672, 1038
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	2 cut(s)	1341, 1342
BsaAI	YACGTR	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	1503
BsaI	GGTCTC	2 cut(s)	56, 1929
BsaJI	CCNNGG	8 cut(s)	36, 643, 766, 1005, 1310, 1340, 1551, 1919
BsaWI	WCCGGW	1 cut(s)	1495
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 157, 187, 845, 875
Bsc4I	CCNNNNNNNGG	3 cut(s)	870, 1180, 1436
Bse1I	ACTGG	4 cut(s)	247, 308, 733, 1255
Bse3DI	GCAATG	1 cut(s)	2027
Bse8I	GATNNNNATC	1 cut(s)	1503
BseBI	CCWGG	6 cut(s)	228, 1006, 1215, 1311, 1389, 1746
BseDI	CCNNGG	8 cut(s)	36, 643, 766, 1005, 1310, 1340, 1551, 1919
BseGI	GGATG	5 cut(s)	313, 727, 1279, 1461, 1552
BseJI	GATNNNNATC	1 cut(s)	1503
BseLI	CCNNNNNNNGG	3 cut(s)	870, 1180, 1436
BseMI	GCAATG	1 cut(s)	2027
BseMII	CTCAG	3 cut(s)	813, 1473, 1976
BseNI	ACTGG	4 cut(s)	247, 308, 733, 1255
BseXI	GCAGC	3 cut(s)	19, 481, 1465
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	8 cut(s)	201, 526, 536, 874, 1072, 1208, 1370, 1775
BshNI	GGYRCC	1 cut(s)	1825
BsiEI	CGRYCG	1 cut(s)	637
BsiHKCI	CYCGRG	2 cut(s)	1266, 1340
BsiSI	CCGG	4 cut(s)	527, 1181, 1341, 1496
BslFI	GGGAC	3 cut(s)	117, 161, 1596
BslI	CCNNNNNNNGG	3 cut(s)	870, 1180, 1436
BsmAI	GTCTC	3 cut(s)	56, 65, 1929
BsmFI	GGGAC	3 cut(s)	117, 161, 1596
BsnI	GGCC	8 cut(s)	201, 526, 536, 874, 1072, 1208, 1370, 1775
Bso31I	GGTCTC	2 cut(s)	56, 1929
BsoBI	CYCGRG	2 cut(s)	1266, 1340
Bsp1720I	GCTNAGC	2 cut(s)	672, 1038
Bsp19I	CCATGG	1 cut(s)	766
BspACI	CCGC	9 cut(s)	12, 107, 155, 593, 1209, 1271, 1779, 1846, 1974
BspANI	GGCC	8 cut(s)	201, 526, 536, 874, 1072, 1208, 1370, 1775
BspCNI	CTCAG	3 cut(s)	814, 1474, 1975
BspFNI	CGCG	1 cut(s)	12
BspHI	TCATGA	2 cut(s)	1515, 1648
BspLI	GGNNCC	6 cut(s)	105, 1011, 1338, 1500, 1702, 1827
BspPI	GGATC	8 cut(s)	430, 1004, 1017, 1129, 1234, 1493, 1506, 1583
BspT107I	GGYRCC	1 cut(s)	1825
BspTNI	GGTCTC	2 cut(s)	56, 1929
BsrBI	CCGCTC	1 cut(s)	1271
BsrDI	GCAATG	1 cut(s)	2027
BsrI	ACTGG	4 cut(s)	247, 308, 733, 1255
BssECI	CCNNGG	8 cut(s)	36, 643, 766, 1005, 1310, 1340, 1551, 1919
BssT1I	CCWWGG	4 cut(s)	36, 643, 766, 1919
Bst2UI	CCWGG	6 cut(s)	228, 1006, 1215, 1311, 1389, 1746
Bst4CI	ACNGT	3 cut(s)	59, 448, 1627
Bst6I	CTCTTC	1 cut(s)	1050
BstAPI	GCANNNNNTGC	1 cut(s)	1048
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	534, 1070, 1186
BstDEI	CTNAG	5 cut(s)	672, 822, 1038, 1482, 1962
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	5 cut(s)	313, 727, 1279, 1461, 1552
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstMAI	GTCTC	3 cut(s)	56, 65, 1929
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	3 cut(s)	1048, 1190, 1787
BstNI	CCWGG	6 cut(s)	228, 1006, 1215, 1311, 1389, 1746
BstNSI	RCATGY	1 cut(s)	1304
BstSCI	CCNGG	8 cut(s)	226, 1004, 1213, 1309, 1339, 1340, 1387, 1744
BstSFI	CTRYAG	3 cut(s)	912, 1839, 1866
BstSNI	TACGTA	1 cut(s)	405
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	19, 481, 1465
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	3 cut(s)	1009, 1498, 1575
BstYI	RGATCY	3 cut(s)	1009, 1498, 1575
BsuI	GTATCC	2 cut(s)	595, 1244
BsuRI	GGCC	8 cut(s)	201, 526, 536, 874, 1072, 1208, 1370, 1775
BtgI	CCRYGG	1 cut(s)	766
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	5 cut(s)	313, 727, 1279, 1461, 1552
BtsIMutI	CAGTG	2 cut(s)	55, 1623
Cac8I	GCNNGC	3 cut(s)	534, 1070, 1186
CaiI	CAGNNNCTG	1 cut(s)	1745
CciI	TCATGA	2 cut(s)	1515, 1648
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	8 cut(s)	104, 839, 853, 872, 968, 998, 1439, 2021
Cfr9I	CCCGGG	1 cut(s)	1340
CseI	GACGC	1 cut(s)	1043
DdeI	CTNAG	5 cut(s)	672, 822, 1038, 1482, 1962
DraI	TTTAAA	2 cut(s)	355, 681
EaeI	YGGCCR	3 cut(s)	524, 534, 1206
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
EciI	GGCGGA	3 cut(s)	1768, 1861, 1989
Eco105I	TACGTA	1 cut(s)	405
Eco130I	CCWWGG	4 cut(s)	36, 643, 766, 1919
Eco31I	GGTCTC	2 cut(s)	56, 1929
Eco47I	GGWCC	7 cut(s)	104, 839, 853, 968, 998, 1439, 2021
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	2 cut(s)	1266, 1340
EcoO109I	RGGNCCY	2 cut(s)	853, 2021
EcoRI	GAATTC	1 cut(s)	1881
EcoRII	CCWGG	6 cut(s)	226, 1004, 1213, 1309, 1387, 1744
EcoT14I	CCWWGG	4 cut(s)	36, 643, 766, 1919
EcoT22I	ATGCAT	3 cut(s)	496, 1053, 1333
ErhI	CCWWGG	4 cut(s)	36, 643, 766, 1919
FalI	AAGNNNNNCTT	6 cut(s)	660, 692, 1057, 1089, 1177, 1209
FaqI	GGGAC	3 cut(s)	117, 161, 1596
FauI	CCCGC	1 cut(s)	5
FbaI	TGATCA	1 cut(s)	807
FblI	GTMKAC	1 cut(s)	1620
Fnu4HI	GCNGC	4 cut(s)	8, 470, 1209, 1479
FokI	GGATG	5 cut(s)	320, 734, 1286, 1448, 1559
Fsp4HI	GCNGC	4 cut(s)	8, 470, 1209, 1479
FspBI	CTAG	7 cut(s)	606, 644, 897, 992, 1616, 1674, 2015
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	4 cut(s)	8, 470, 1209, 1479
GsuI	CTGGAG	2 cut(s)	1236, 1767
HaeIII	GGCC	8 cut(s)	201, 526, 536, 874, 1072, 1208, 1370, 1775
HapII	CCGG	4 cut(s)	527, 1181, 1341, 1496
HgaI	GACGC	1 cut(s)	1043
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	4 cut(s)	563, 674, 1412, 1724
HinfI	GANTC	6 cut(s)	246, 428, 1264, 1345, 1398, 1992
HpaII	CCGG	4 cut(s)	527, 1181, 1341, 1496
HphI	GGTGA	5 cut(s)	52, 169, 850, 956, 1072
Hpy166II	GTNNAC	4 cut(s)	233, 451, 839, 1621
Hpy188I	TCNGA	9 cut(s)	601, 846, 1111, 1546, 1555, 1700, 1763, 1965, 2012
Hpy188III	TCNNGA	4 cut(s)	146, 665, 1516, 1649
Hpy8I	GTNNAC	4 cut(s)	233, 451, 839, 1621
Hpy99I	CGWCG	3 cut(s)	872, 880, 1037
HpyAV	CCTTC	6 cut(s)	423, 427, 512, 606, 1931, 2012
HpyCH4III	ACNGT	3 cut(s)	59, 448, 1627
HpyCH4IV	ACGT	6 cut(s)	404, 498, 546, 867, 1585, 1689
HpyCH4V	TGCA	9 cut(s)	208, 469, 494, 689, 1051, 1277, 1331, 1790, 1933
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1048, 1190, 1787
HpyF3I	CTNAG	5 cut(s)	672, 822, 1038, 1482, 1962
HpySE526I	ACGT	6 cut(s)	404, 498, 546, 867, 1585, 1689
HspAI	GCGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	807
LmnI	GCTCC	4 cut(s)	529, 1111, 1747, 1764
Lsp1109I	GCAGC	3 cut(s)	19, 481, 1465
LweI	GCATC	7 cut(s)	61, 142, 1038, 1079, 1264, 1470, 1537
MaeI	CTAG	7 cut(s)	606, 644, 897, 992, 1616, 1674, 2015
MaeII	ACGT	6 cut(s)	404, 498, 546, 867, 1585, 1689
MaeIII	GTNAC	1 cut(s)	1669
MbiI	CCGCTC	1 cut(s)	1271
MboII	GAAGA	5 cut(s)	172, 386, 496, 621, 1067
MflI	RGATCY	3 cut(s)	1009, 1498, 1575
MlsI	TGGCCA	1 cut(s)	536
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	3 cut(s)	422, 1258, 2001
MmeI	TCCRAC	7 cut(s)	171, 579, 1025, 1386, 1532, 1678, 1776
Mox20I	TGGCCA	1 cut(s)	536
Mph1103I	ATGCAT	3 cut(s)	496, 1053, 1333
MscI	TGGCCA	1 cut(s)	536
MslI	CAYNNNNRTG	3 cut(s)	593, 1545, 2032
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	2 cut(s)	109, 629
MspI	CCGG	4 cut(s)	527, 1181, 1341, 1496
MspR9I	CCNGG	8 cut(s)	228, 1006, 1215, 1311, 1341, 1342, 1389, 1746
MvaI	CCWGG	6 cut(s)	228, 1006, 1215, 1311, 1389, 1746
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	1048, 1190, 1787
NciI	CCSGG	2 cut(s)	1341, 1342
NcoI	CCATGG	1 cut(s)	766
NlaIV	GGNNCC	6 cut(s)	105, 1011, 1338, 1500, 1702, 1827
NmeAIII	GCCGAG	2 cut(s)	1169, 1396
NmuCI	GTSAC	1 cut(s)	1669
NsiI	ATGCAT	3 cut(s)	496, 1053, 1333
NspI	RCATGY	1 cut(s)	1304
PaeR7I	CTCGAG	1 cut(s)	1266
PagI	TCATGA	2 cut(s)	1515, 1648
PciI	ACATGT	1 cut(s)	1300
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	246, 1345, 1398
PflFI	GACNNNGTC	1 cut(s)	1289
PflMI	CCANNNNNTGG	1 cut(s)	1436
PfoI	TCCNGGA	1 cut(s)	1744
PkrI	GCNGC	4 cut(s)	9, 471, 1210, 1480
PleI	GAGTC	3 cut(s)	422, 1258, 2000
PpsI	GAGTC	3 cut(s)	422, 1258, 2000
Ppu21I	YACGTR	1 cut(s)	405
PpuMI	RGGWCCY	2 cut(s)	853, 2021
PscI	ACATGT	1 cut(s)	1300
PsiI	TTATAA	1 cut(s)	1755
Psp5II	RGGWCCY	2 cut(s)	853, 2021
Psp6I	CCWGG	6 cut(s)	226, 1004, 1213, 1309, 1387, 1744
PspGI	CCWGG	6 cut(s)	226, 1004, 1213, 1309, 1387, 1744
PspN4I	GGNNCC	6 cut(s)	105, 1011, 1338, 1500, 1702, 1827
PspPI	GGNCC	8 cut(s)	104, 839, 853, 872, 968, 998, 1439, 2021
PspPPI	RGGWCCY	2 cut(s)	853, 2021
PspXI	VCTCGAGB	1 cut(s)	1266
PstNI	CAGNNNCTG	1 cut(s)	1745
PsuI	RGATCY	3 cut(s)	1009, 1498, 1575
PsyI	GACNNNGTC	1 cut(s)	1289
PvuII	CAGCTG	1 cut(s)	629
RseI	CAYNNNNRTG	3 cut(s)	593, 1545, 2032
SatI	GCNGC	4 cut(s)	8, 470, 1209, 1479
Sau96I	GGNCC	8 cut(s)	104, 839, 853, 872, 968, 998, 1439, 2021
ScaI	AGTACT	2 cut(s)	737, 820
SchI	GAGTC	3 cut(s)	422, 1258, 2001
ScrFI	CCNGG	8 cut(s)	228, 1006, 1215, 1311, 1341, 1342, 1389, 1746
SfaNI	GCATC	7 cut(s)	61, 142, 1038, 1079, 1264, 1470, 1537
SfcI	CTRYAG	3 cut(s)	912, 1839, 1866
Sfr274I	CTCGAG	1 cut(s)	1266
SinI	GGWCC	7 cut(s)	104, 839, 853, 968, 998, 1439, 2021
SlaI	CTCGAG	1 cut(s)	1266
SmaI	CCCGGG	1 cut(s)	1342
SmiMI	CAYNNNNRTG	3 cut(s)	593, 1545, 2032
SmlI	CTYRAG	2 cut(s)	739, 1266
SmoI	CTYRAG	2 cut(s)	739, 1266
SnaBI	TACGTA	1 cut(s)	405
SsiI	CCGC	9 cut(s)	12, 107, 155, 593, 1209, 1271, 1779, 1846, 1974
SspMI	CTAG	7 cut(s)	606, 644, 897, 992, 1616, 1674, 2015
StyD4I	CCNGG	8 cut(s)	226, 1004, 1213, 1309, 1339, 1340, 1387, 1744
StyI	CCWWGG	4 cut(s)	36, 643, 766, 1919
TaaI	ACNGT	3 cut(s)	59, 448, 1627
TaiI	ACGT	6 cut(s)	407, 501, 549, 870, 1588, 1692
TaqII	GACCGA	1 cut(s)	651
TatI	WGTACW	2 cut(s)	735, 818
TauI	GCSGC	1 cut(s)	1211
TfiI	GAWTC	3 cut(s)	246, 1345, 1398
TscAI	CASTG	2 cut(s)	62, 1630
TseFI	GTSAC	1 cut(s)	1669
TseI	GCWGC	3 cut(s)	7, 469, 1478
Tsp45I	GTSAC	1 cut(s)	1669
TspDTI	ATGAA	9 cut(s)	385, 531, 607, 698, 1068, 1532, 1830, 1874, 1950
TspGWI	ACGGA	3 cut(s)	348, 357, 380
TspMI	CCCGGG	1 cut(s)	1340
TspRI	CASTG	2 cut(s)	62, 1630
Tth111I	GACNNNGTC	1 cut(s)	1289
Van91I	CCANNNNNTGG	1 cut(s)	1436
VpaK11BI	GGWCC	7 cut(s)	104, 839, 853, 968, 998, 1439, 2021
XapI	RAATTY	4 cut(s)	350, 932, 1135, 1881
XceI	RCATGY	1 cut(s)	1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XhoI	CTCGAG	1 cut(s)	1266
XmaI	CCCGGG	1 cut(s)	1340
XmaJI	CCTAGG	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	1620
XspI	CTAG	7 cut(s)	606, 644, 897, 992, 1616, 1674, 2015
ZrmI	AGTACT	2 cut(s)	737, 820
Zsp2I	ATGCAT	3 cut(s)	496, 1053, 1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.