Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Forward (+)

16568507 .. 16573408

Gene Structure 4902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGAAAACCCAACCTCAGATTCAAATTAAAAAGACAGGCCCAATATCCCTGTTAAACCCTAAACCCCTAAAACCCTCGTGCCTCTCTCTCTCAAATTCTTCTTCTTCAGTTCTTCTCCGATCACTCACCACCACCCAAACAATGTCCTCCGCCCTCATCGAACGCCCTAGAATCTTCTCGAAGCTTCTATGCCGGCTCCTCCTGACCCAAAACATGGGCGGCGGACCCCGGACCTTCCCCGGCGGCGTCAGCAAGTGGAAATGGAAGCGCACGCACGAGAAACGAGCCAAGGACAAAGAGAAACGCCTCTTGGACCAAGAAAAGCAGCTCTACGAGGCCCGTCTTCGCTCCCAAATCCGGGGCAGCCTCGTCGGAAAACCCGACCCGCTTTCCGACCCGGGTCCGGAAACCAACCACAGCCCCATGGACCCCGACCGGCACATCAAATCCCTAGCCAATCGGTTCATGAAGGAAGGCGCCGAGGACTTGTGGAACGAAAAGGACGGCCCGGTTCACGAGCCGCCACCGCAGCCGCCGGTCGGGTCGGGCCGGCAATCCAGATCGATTCCGGCTGACCTGAGGAAGCTGATACCGAAAGGTCGAAATTTGGCGGGAAATGATAGAAATTTGAGTAGTTTGGGGTGTAGTTATGTTAGCAGTAGAAGCTATTCGGTGCAGAGTAGAGGGAGGTTTAGGAGGAACGATGATTCGAGTGACGATTCGGATTTCGATTCCGATAATGAGGCCATGCAGCCGTTTTGGGAGGGTAGAAATGGGAATGAGAAACCGAAATCGGAGAGAAATGTGAGGAATTTGGGGAGTAGTGCTTCTCTGGGGAAGTATGATAGGAAGGTGATTAAGAGGAGAGTGCCTCTTAATGCATTGGAAGATGAGTGTGATTTTGCGCAGCAGGTGGAATCGATTAGGTATGAGCTGGGTAAGAAAAAGGAGGTTGAAATTGAGAGAGGGGAGAGTGAAGAGGAGGGGTCGATTCTTAGTGAGAAGAGATTTGATGAGTGTGGGATATCTCCATTTACAGTCAAGGCATTGTCTTCTGCTGGGTATGTTCGAATGACTAGAGTTCAGGAGGCTGCAATTTCGGCTTGCCTTGAGGGAAAGGATGGTTTGGTCAAAGCTAAAACCGGCACTGGCAAAACTGCTGCCTTTTTGCTTCCGGCTATTGAAGCAGTTGTGAAGGGTATGGCTGGCAATACCAATCAACGGGTGTCTCCAATTTTTGTTCTTATCCTCTGCCCCACAAGAGAACTTGCAAGTCAGATAGCTGCAGAAACAAATGTTTTGTTGAAGTACCATGAAGGCATAGGCATGCAAACATTAGTTGGAGGCACGAGATTTAAAGAGGACCAGAAACGTCTAGAATCAAATCCATGCCAGATAATAGTTGCCACTCCTGGCAGGTTGCTGGACCACATTGAGAATAGGTCTGGCTTGTCAGTGCGATTGATGGGACTGAAAATGTTAATACTTGATGAAGCTGGCCACTTACTAGACCTAGGATTTCGGAAGGACATAGAGAAAATCGTTGATTGTTTGCCTCGTAAGAGACAGTCCTTGCTCTTTACAGCAACACTCCCAAAAGAGGTTCGCCGCATATCACAGCTTGTTTTGAAAAAAGATCATGCTTTCATTGATACAGTGGGATTGGGCTGTGTGGAAACTCACGCTAAGGTTAAGCAGTCATATCTTGTTGCACCACATGACTTTCATTTTCAAATAGTTCATCATCTTTTGAAGGAGCATATCTGGCAATCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATCCTGATGTTACATTGGTCATTCAGGTGGGTATTCCTTCTGACCGGGAACAATATATACACCGTCTTGGAAGAACAGGACGGGAAGGTAAAGAAGGAGAAGGCATATTGTTGCTTGCACCGTGGGAGGAGTATTTTCTGGAGGAATTAAAAGATTTGCCCCTTGAAAAATTTCCTTCACTGCGATTGGATCCAGGCACTAAACTCAAGATTGAGGATTCAATGACCAAGGTTGACAGTAGTGTCAAGGAAGCCGCTTATCATGCTTGGCTTGGCTACTACAACTCGATCAGGGAAACTGGTAGGGATAAAACTACACTTGTTGAGCAAGCCAACCTCTTTTGTCAGTCAATTGGTTTGCAAACTCCTCCTTCTCTCTTTAGAAAGACAGCATTAAAGATGGGTTTGAAAGATATACCTGGCATAAAAATACGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

804

Amino Acids

90.49

Weight (kDa)

9.42

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	358 - 532	1.5e-08	Type III restriction enzyme, res subunit
DEAD	PF00270	359 - 537	3.5e-43	DEAD/DEAH box helicase
Helicase_C	PF00271	583 - 688	2.1e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1782
AarI	CACCTGC	1 cut(s)	901
AasI	GACNNNNNNGTC	1 cut(s)	2216
Acc16I	TGCGCA	1 cut(s)	906
Acc36I	ACCTGC	2 cut(s)	901, 1407
AccB1I	GGYRCC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	403
AclWI	GGATC	2 cut(s)	2159, 2172
AcoI	YGGCCR	1 cut(s)	1498
AcsI	RAATTY	6 cut(s)	94, 604, 625, 811, 1913, 2144
AcuI	CTGAAG	1 cut(s)	90
AcvI	CACGTG	1 cut(s)	1964
AcyI	GRCGYC	2 cut(s)	246, 477
AfaI	GTAC	2 cut(s)	1310, 1801
AfiI	CCNNNNNNNGG	7 cut(s)	214, 357, 358, 403, 539, 1221, 1600
AjnI	CCWGG	3 cut(s)	1411, 2167, 2392
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 293, 325
AluBI	AGCT	9 cut(s)	184, 328, 586, 666, 934, 1136, 1283, 1496, 1621
AluI	AGCT	9 cut(s)	184, 328, 586, 666, 934, 1136, 1283, 1496, 1621
Alw26I	GTCTC	2 cut(s)	1233, 1558
AlwI	GGATC	2 cut(s)	2159, 2172
Ama87I	CYCGRG	1 cut(s)	397
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	6 cut(s)	37, 336, 505, 547, 744, 1498
ApeKI	GCWGC	8 cut(s)	325, 363, 529, 751, 907, 1091, 1160, 1283
ApoI	RAATTY	6 cut(s)	94, 604, 625, 811, 1913, 2144
Asp700I	GAANNNNTTC	2 cut(s)	667, 2145
AspA2I	CCTAGG	1 cut(s)	1513
AspLEI	GCGC	3 cut(s)	270, 479, 907
AsuC2I	CCSGG	7 cut(s)	229, 240, 359, 398, 399, 509, 2021
AsuHPI	GGTGA	3 cut(s)	118, 865, 1764
AsuII	TTCGAA	1 cut(s)	1069
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	7 cut(s)	224, 231, 313, 401, 427, 1363, 1426
AvrII	CCTAGG	1 cut(s)	1513
AxyI	CCTNAGG	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	1500
BamHI	GGATCC	1 cut(s)	2164
BanI	GGYRCC	1 cut(s)	476
BauI	CACGAG	4 cut(s)	76, 275, 515, 1348
BbrPI	CACGTG	1 cut(s)	1964
BbsI	GAAGAC	2 cut(s)	335, 1044
BbvI	GCAGC	8 cut(s)	337, 375, 541, 763, 919, 1078, 1147, 1270
BccI	CCATC	3 cut(s)	1115, 1459, 2368
BceAI	ACGGC	2 cut(s)	520, 739
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	3 cut(s)	1413, 2169, 2394
BcnI	CCSGG	7 cut(s)	229, 240, 359, 398, 399, 509, 2021
BcoDI	GTCTC	2 cut(s)	1233, 1558
BfaI	CTAG	7 cut(s)	168, 452, 1077, 1376, 1508, 1514, 1875
BfmI	CTRYAG	1 cut(s)	1284
BfoI	RGCGCY	1 cut(s)	480
BfuAI	ACCTGC	2 cut(s)	901, 1407
BlnI	CCTAGG	1 cut(s)	1513
Bme18I	GGWCC	7 cut(s)	224, 231, 313, 401, 427, 1363, 1426
BmeT110I	CYCGRG	1 cut(s)	397
BmiI	GGNNCC	6 cut(s)	197, 226, 402, 429, 478, 2166
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	335, 1044
BplI	GAGNNNNNCTC	2 cut(s)	856, 888
BpmI	CTGGAG	1 cut(s)	2135
Bpu10I	CCTNAGC	1 cut(s)	1686
Bpu14I	TTCGAA	1 cut(s)	1069
BpuEI	CTTGAG	2 cut(s)	1130, 2165
BpuMI	CCSGG	7 cut(s)	229, 240, 359, 398, 399, 509, 2021
Bsa29I	ATCGAT	2 cut(s)	563, 920
BsaAI	YACGTR	1 cut(s)	1964
BsaHI	GRCGYC	2 cut(s)	246, 477
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	7 cut(s)	214, 357, 358, 403, 539, 1221, 1600
Bse118I	RCCGGY	5 cut(s)	192, 435, 535, 549, 1142
Bse1I	ACTGG	3 cut(s)	1153, 1810, 2278
Bse21I	CCTNAGG	1 cut(s)	578
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	1413, 2169, 2394
BseCI	ATCGAT	2 cut(s)	563, 920
BseGI	GGATG	2 cut(s)	1126, 1817
BseLI	CCNNNNNNNGG	7 cut(s)	214, 357, 358, 403, 539, 1221, 1600
BseMII	CTCAG	3 cut(s)	29, 569, 1899
BseNI	ACTGG	3 cut(s)	1153, 1810, 2278
BseRI	GAGGAG	6 cut(s)	188, 877, 995, 1814, 2117, 2331
BseXI	GCAGC	8 cut(s)	337, 375, 541, 763, 919, 1078, 1147, 1270
BseYI	CCCAGC	2 cut(s)	934, 1058
BsgI	GTGCAG	1 cut(s)	695
Bsh1285I	CGRYCG	2 cut(s)	436, 540
BshFI	GGCC	6 cut(s)	39, 338, 507, 549, 746, 1500
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	2 cut(s)	563, 920
BsiEI	CGRYCG	2 cut(s)	436, 540
BsiHKCI	CYCGRG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	1482
BslI	CCNNNNNNNGG	7 cut(s)	214, 357, 358, 403, 539, 1221, 1600
BsmAI	GTCTC	2 cut(s)	1233, 1558
BsmFI	GGGAC	1 cut(s)	1482
BsnI	GGCC	6 cut(s)	39, 338, 507, 549, 746, 1500
BsoBI	CYCGRG	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	1069
Bsp13I	TCCGGA	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	1799
Bsp143I	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
Bsp19I	CCATGG	1 cut(s)	423
BspANI	GGCC	6 cut(s)	39, 338, 507, 549, 746, 1500
BspCNI	CTCAG	3 cut(s)	28, 570, 1900
BspDI	ATCGAT	2 cut(s)	563, 920
BspEI	TCCGGA	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	6 cut(s)	197, 226, 402, 429, 478, 2166
BspMAI	CTGCAG	1 cut(s)	1288
BspMI	ACCTGC	2 cut(s)	901, 1407
BspPI	GGATC	2 cut(s)	2159, 2172
BspT104I	TTCGAA	1 cut(s)	1069
BspT107I	GGYRCC	1 cut(s)	476
BsrFI	RCCGGY	5 cut(s)	192, 435, 535, 549, 1142
BsrGI	TGTACA	1 cut(s)	1799
BsrI	ACTGG	3 cut(s)	1153, 1810, 2278
BssAI	RCCGGY	5 cut(s)	192, 435, 535, 549, 1142
BssMI	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
BssNI	GRCGYC	2 cut(s)	246, 477
BssSI	CACGAG	4 cut(s)	76, 275, 515, 1348
BssT1I	CCWWGG	4 cut(s)	288, 423, 1513, 2202
Bst2BI	CACGAG	4 cut(s)	76, 275, 515, 1348
Bst2UI	CCWGG	3 cut(s)	1413, 2169, 2394
Bst4CI	ACNGT	7 cut(s)	1039, 1569, 1657, 1890, 2039, 2097, 2213
Bst6I	CTCTTC	2 cut(s)	972, 998
BstACI	GRCGYC	2 cut(s)	246, 477
BstAUI	TGTACA	1 cut(s)	1799
BstBAI	YACGTR	1 cut(s)	1964
BstBI	TTCGAA	1 cut(s)	1069
BstC8I	GCNNGC	9 cut(s)	194, 272, 551, 1105, 1207, 1328, 1498, 2091, 2304
BstDEI	CTNAG	5 cut(s)	15, 578, 995, 1686, 1908
BstDSI	CCRYGG	2 cut(s)	423, 2096
BstF5I	GGATG	2 cut(s)	1126, 1817
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	3 cut(s)	270, 479, 907
BstKTI	GATC	5 cut(s)	122, 563, 1639, 2167, 2265
BstMAI	GTCTC	2 cut(s)	1233, 1558
BstMBI	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
BstMCI	CGRYCG	2 cut(s)	436, 540
BstMWI	GCNNNNNNNGC	8 cut(s)	249, 526, 529, 663, 1100, 1184, 1765, 2237
BstNI	CCWGG	3 cut(s)	1413, 2169, 2394
BstNSI	RCATGY	1 cut(s)	1330
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	1284
BstV1I	GCAGC	8 cut(s)	337, 375, 541, 763, 919, 1078, 1147, 1270
BstV2I	GAAGAC	2 cut(s)	335, 1044
BstX2I	RGATCY	1 cut(s)	2164
BstYI	RGATCY	1 cut(s)	2164
Bsu15I	ATCGAT	2 cut(s)	563, 920
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	6 cut(s)	39, 338, 507, 549, 746, 1500
BsuTUI	ATCGAT	2 cut(s)	563, 920
BtgI	CCRYGG	2 cut(s)	423, 2096
BtsCI	GGATG	2 cut(s)	1126, 1817
BtsI	GCAGTG	1 cut(s)	2153
BtsIMutI	CAGTG	4 cut(s)	1146, 1461, 1662, 2153
BveI	ACCTGC	2 cut(s)	901, 1407
Cac8I	GCNNGC	9 cut(s)	194, 272, 551, 1105, 1207, 1328, 1498, 2091, 2304
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	3 cut(s)	270, 479, 907
Cfr10I	RCCGGY	5 cut(s)	192, 435, 535, 549, 1142
Cfr9I	CCCGGG	1 cut(s)	397
ClaI	ATCGAT	2 cut(s)	563, 920
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	1309, 1800
CviQI	GTAC	2 cut(s)	1309, 1800
DdeI	CTNAG	5 cut(s)	15, 578, 995, 1686, 1908
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	5 cut(s)	121, 562, 1638, 2166, 2264
DpnII	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
DraI	TTTAAA	1 cut(s)	1357
DrdI	GACNNNNNNGTC	1 cut(s)	2216
DseDI	GACNNNNNNGTC	1 cut(s)	2216
EaeI	YGGCCR	1 cut(s)	1498
Eam1104I	CTCTTC	2 cut(s)	972, 998
EarI	CTCTTC	2 cut(s)	972, 998
EciI	GGCGGA	2 cut(s)	139, 237
Eco130I	CCWWGG	4 cut(s)	288, 423, 1513, 2202
Eco32I	GATATC	1 cut(s)	1026
Eco47I	GGWCC	7 cut(s)	224, 231, 313, 401, 427, 1363, 1426
Eco57I	CTGAAG	1 cut(s)	90
Eco72I	CACGTG	1 cut(s)	1964
Eco81I	CCTNAGG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	1913
EcoRII	CCWGG	3 cut(s)	1411, 2167, 2392
EcoRV	GATATC	1 cut(s)	1026
EcoT14I	CCWWGG	4 cut(s)	288, 423, 1513, 2202
EcoT22I	ATGCAT	1 cut(s)	883
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	4 cut(s)	288, 423, 1513, 2202
FaqI	GGGAC	1 cut(s)	1482
FauI	CCCGC	2 cut(s)	393, 604
FokI	GGATG	2 cut(s)	1133, 1804
FspBI	CTAG	7 cut(s)	168, 452, 1077, 1376, 1508, 1514, 1875
FspI	TGCGCA	1 cut(s)	906
GlaI	GCGC	3 cut(s)	269, 478, 906
GsaI	CCCAGC	2 cut(s)	938, 1062
GsuI	CTGGAG	1 cut(s)	2135
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	6 cut(s)	39, 338, 507, 549, 746, 1500
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	3 cut(s)	270, 479, 907
Hin1I	GRCGYC	2 cut(s)	246, 477
Hin6I	GCGC	3 cut(s)	268, 477, 905
HinP1I	GCGC	3 cut(s)	268, 477, 905
HincII	GTYRAC	1 cut(s)	2209
HindII	GTYRAC	1 cut(s)	2209
HindIII	AAGCTT	1 cut(s)	182
HphI	GGTGA	3 cut(s)	118, 865, 1764
Hpy166II	GTNNAC	2 cut(s)	514, 2209
Hpy8I	GTNNAC	2 cut(s)	514, 2209
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4III	ACNGT	7 cut(s)	1039, 1569, 1657, 1890, 2039, 2097, 2213
HpyCH4IV	ACGT	2 cut(s)	1372, 1963
HpyF10VI	GCNNNNNNNGC	8 cut(s)	249, 526, 529, 663, 1100, 1184, 1765, 2237
HpyF3I	CTNAG	5 cut(s)	15, 578, 995, 1686, 1908
HpySE526I	ACGT	2 cut(s)	1372, 1963
Hsp92I	GRCGYC	2 cut(s)	246, 477
HspAI	GCGC	3 cut(s)	268, 477, 905
KasI	GGCGCC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	403
KroI	GCCGGC	2 cut(s)	192, 549
KroNI	GCCGGC	2 cut(s)	194, 551
Kzo9I	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
LmnI	GCTCC	3 cut(s)	201, 353, 1756
Lsp1109I	GCAGC	8 cut(s)	337, 375, 541, 763, 919, 1078, 1147, 1270
MaeI	CTAG	7 cut(s)	168, 452, 1077, 1376, 1508, 1514, 1875
MaeII	ACGT	2 cut(s)	1372, 1963
MaeIII	GTNAC	4 cut(s)	713, 1813, 1942, 1984
MalI	GATC	5 cut(s)	121, 562, 1638, 2166, 2264
MboI	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
MfeI	CAATTG	2 cut(s)	1931, 2325
MflI	RGATCY	1 cut(s)	2164
MlsI	TGGCCA	1 cut(s)	1500
MluNI	TGGCCA	1 cut(s)	1500
Mly113I	GGCGCC	1 cut(s)	477
MmeI	TCCRAC	3 cut(s)	352, 417, 1321
Mox20I	TGGCCA	1 cut(s)	1500
Mph1103I	ATGCAT	1 cut(s)	883
MroI	TCCGGA	1 cut(s)	403
MroNI	GCCGGC	2 cut(s)	192, 549
MroXI	GAANNNNTTC	2 cut(s)	667, 2145
MscI	TGGCCA	1 cut(s)	1500
MseI	TTAA	9 cut(s)	27, 53, 858, 876, 1356, 1481, 1692, 2123, 2369
MslI	CAYNNNNRTG	2 cut(s)	1325, 2000
Msp20I	TGGCCA	1 cut(s)	1500
MunI	CAATTG	2 cut(s)	1931, 2325
MvaI	CCWGG	3 cut(s)	1413, 2169, 2394
MwoI	GCNNNNNNNGC	8 cut(s)	249, 526, 529, 663, 1100, 1184, 1765, 2237
NaeI	GCCGGC	2 cut(s)	194, 551
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	7 cut(s)	229, 240, 359, 398, 399, 509, 2021
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
NgoMIV	GCCGGC	2 cut(s)	192, 549
NlaIV	GGNNCC	6 cut(s)	197, 226, 402, 429, 478, 2166
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	713
NsbI	TGCGCA	1 cut(s)	906
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	1 cut(s)	1330
NspV	TTCGAA	1 cut(s)	1069
PaeI	GCATGC	1 cut(s)	1330
PagI	TCATGA	1 cut(s)	465
PaqCI	CACCTGC	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	2 cut(s)	194, 551
PdmI	GAANNNNTTC	2 cut(s)	667, 2145
PflMI	CCANNNNNTGG	1 cut(s)	214
PluTI	GGCGCC	1 cut(s)	480
PmaCI	CACGTG	1 cut(s)	1964
PmlI	CACGTG	1 cut(s)	1964
Ppu21I	YACGTR	1 cut(s)	1964
PshAI	GACNNNNGTC	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	1782
Psp6I	CCWGG	3 cut(s)	1411, 2167, 2392
PspCI	CACGTG	1 cut(s)	1964
PspFI	CCCAGC	2 cut(s)	934, 1058
PspGI	CCWGG	3 cut(s)	1411, 2167, 2392
PspN4I	GGNNCC	6 cut(s)	197, 226, 402, 429, 478, 2166
PsrI	GAACNNNNNNTAC	2 cut(s)	2016, 2048
PstI	CTGCAG	1 cut(s)	1288
PsuI	RGATCY	1 cut(s)	2164
RsaI	GTAC	2 cut(s)	1310, 1801
RsaNI	GTAC	2 cut(s)	1309, 1800
RseI	CAYNNNNRTG	2 cut(s)	1325, 2000
SaqAI	TTAA	9 cut(s)	27, 53, 858, 876, 1356, 1481, 1692, 2123, 2369
Sau3AI	GATC	5 cut(s)	119, 560, 1636, 2164, 2262
SfcI	CTRYAG	1 cut(s)	1284
SfoI	GGCGCC	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	1069
SinI	GGWCC	7 cut(s)	224, 231, 313, 401, 427, 1363, 1426
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	1325, 2000
SmlI	CTYRAG	2 cut(s)	1109, 2180
SmoI	CTYRAG	2 cut(s)	1109, 2180
SphI	GCATGC	1 cut(s)	1330
SspDI	GGCGCC	1 cut(s)	476
SspMI	CTAG	7 cut(s)	168, 452, 1077, 1376, 1508, 1514, 1875
StyI	CCWWGG	4 cut(s)	288, 423, 1513, 2202
TaaI	ACNGT	7 cut(s)	1039, 1569, 1657, 1890, 2039, 2097, 2213
TaiI	ACGT	2 cut(s)	1375, 1966
TatI	WGTACW	1 cut(s)	1799
TauI	GCSGC	6 cut(s)	222, 246, 523, 535, 1611, 2231
Tru1I	TTAA	9 cut(s)	27, 53, 858, 876, 1356, 1481, 1692, 2123, 2369
Tru9I	TTAA	9 cut(s)	27, 53, 858, 876, 1356, 1481, 1692, 2123, 2369
TscAI	CASTG	4 cut(s)	1153, 1461, 1662, 2160
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	8 cut(s)	325, 363, 529, 751, 907, 1091, 1160, 1283
Tsp45I	GTSAC	1 cut(s)	713
TspGWI	ACGGA	1 cut(s)	1829
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	4 cut(s)	1153, 1461, 1662, 2160
Van91I	CCANNNNNTGG	1 cut(s)	214
VpaK11BI	GGWCC	7 cut(s)	224, 231, 313, 401, 427, 1363, 1426
XapI	RAATTY	6 cut(s)	94, 604, 625, 811, 1913, 2144
XbaI	TCTAGA	2 cut(s)	1375, 1874
XceI	RCATGY	1 cut(s)	1330
XmaI	CCCGGG	1 cut(s)	397
XmaJI	CCTAGG	1 cut(s)	1513
XmnI	GAANNNNTTC	2 cut(s)	667, 2145
XspI	CTAG	7 cut(s)	168, 452, 1077, 1376, 1508, 1514, 1875
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.