Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Forward (+)

15994957 .. 15999290

Gene Structure 4334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG174400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGTCCTCCGCCCTCATCGAACGCCCTAGAATCTTCTCGAAGCTTCTATGCCGGCTCCTCCTGACCCAAAACATGGGCGGCGGACCCCGGACCTTCCCCGGCGGCGTCAGCAAGTGGAAATGGAAGCGCACGCACGAGAAACGAGCCAAGGACAAAGAGAAACGCCTCCTGGACCAAGAAAAGCAGCTCTACGAGGCCCGCCTCCGCTCCCAAATCCGGGGCAGCCTCGTCGGAAAACCCGACCCGCTTTCCGACCCGGGTCCGGAAACCAACCACAGCCCCATGGACCCCGACCGGCACATCAAATCCCTAGCCGATCGGTTCATGAAGGAAGGCGCCGAGGACTTGTGGAACGAAAAGGACGGCCCGGTTCACGAGCCGCCACCGGTCGGGTCGGACCGGCAATCCAGATCGATTCCGGCTGACCTGAGGAAGCTGATACCGAAAGGTCGAAATTTGGCGGGAAATGATAGAAATTTGAGTAGTTTGGGGTGTAGTTATGTTAGCAGTAGAAGCTATTCGGTGCAGAGTAGAGGGAGGTTTAGGAGGAACGATGATTCGAGTGACGATTCGGATTTCGATTCCGATAATGAGGCCATGCAGCCATTTTGGGAGGGTAGAAATGGGAATGAGAAACCGAAATTGGAGAGAAATGTGAGGAATTTGGGGAGTAGTGCTTCTCTGGGGAAGTATGATAGGAAGGTGGTTAAGAGGAGAGTGCCTCTTAATGCATTGGAAGATGAGTGTGATTTTGCGCAGCAGGTGGAATCGATTAGGTATGAGCTGAGTAAGAAAAAGGAGGTTGAAATTGAGAGAGGGGAGAGTGAAGAGGAGGGGTCGATTCTTAGTGAGAAGAGATTTGATGAGTGTGGGATATCTCCATTTACAGTCAAGGCATTGTCTTCTGCTGGGTATGTTCGAATGACTAGAGTTCAGGAGGCTGCAATTTCGGCTTGCCTTGAGGGAAAGGATGTTTTGGTCAAAGCTAAAACCGGCACTGGCAAAACTGCTGCCTTTTTGCTTCCGGCTATTGAAGCAGTTGTGAAGGGTATGGCTGGCAATACCAATCAACAGGTGTCTCCAATTTTTGTTCTTATCCTCTGCCCCACAAGAGAACTTGCAAGTCAGATAGCTGCAGAAACAAATGTTTTGTTGAAGTACCATGAAGGCATAGGCATGCAAACATTAGTTGGAGGCACGAGATTTAAAGAGGACCAGAAACGTCTAGAATCAAATCCATGCCAGATAATAGTTGCCACTCCTGGCAGGTTGCTGGACCACATTGAGAATAGGTCTGGCTTGTCAGTGCGATTGATGGGACTGAAAATGTTAATACTTGATGAAGCTGGCCACTTACTAGACCTAGGATTTCGGAAGGACATAGAGAAAATCGTTGATTGTTTGCCTCGTAAGAGACAGTCCTTGCTCTTTACAGCAACACTCCCAAAAGAGGTTCGCCGCATATCACAGCTTGTTTTGAAAAAAGATCATGCTTTCATTGATACAGTGGGATTGGGCTGTGTGGAAACTCACGCTAAGGTTAAGCAGTCATATCTTGTTGCACCACATGACTTGCATTTTCAAATAGTTCATCATCTTTTGAAGGAGCATATCTGGCAATCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATCCTGATGTTACATTGGTCATTCAGGTGGGTATTCCTTCTGACCGGGAACAATATATACACCGTCTTGGAAGAACAGGACGGGAAGGTAAAGAAGGAGAAGGCATATTGTTGCTTGCACCGTGGGAGGAGTATTTTCTGGAGGAATTAAAAGATTTGCCCCTTGAAAAATTTCCTTCACTGCGATTGGATCCAGGCACTAAACTCAAGATTGAGGATTCAATGACCAAGGTTGACAGTAGTGTCAAGGAAGCCGCCTATCATGCTTGGCTTGGCTACTACAACTCGATCAGGGAAACTGGTAGGGATAAAACTACACTTGTTGAGCAAGCCAACCTCTTTTGTCAGTCAATTGGTTTGCAAACTCCTCCTTCTCTCTTTAGAAAGACAGCATTAAAGATGGGTTTGAAAGATATACCTGGCATAAAAATACGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

754

Amino Acids

85.2

Weight (kDa)

9.18

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	308 - 482	2e-08	Type III restriction enzyme, res subunit
DEAD	PF00270	309 - 487	1.1e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	533 - 638	1.9e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1632
AarI	CACCTGC	1 cut(s)	751
AasI	GACNNNNNNGTC	1 cut(s)	2066
Acc16I	TGCGCA	1 cut(s)	756
Acc36I	ACCTGC	2 cut(s)	751, 1257
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	262
AclWI	GGATC	2 cut(s)	2009, 2022
AcoI	YGGCCR	1 cut(s)	1348
AcsI	RAATTY	5 cut(s)	454, 475, 661, 1763, 1994
AcvI	CACGTG	1 cut(s)	1814
AcyI	GRCGYC	2 cut(s)	105, 336
AfaI	GTAC	2 cut(s)	1160, 1651
AfiI	CCNNNNNNNGG	6 cut(s)	73, 216, 217, 262, 389, 1450
AgeI	ACCGGT	1 cut(s)	385
AjnI	CCWGG	4 cut(s)	168, 1261, 2017, 2242
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	9 cut(s)	43, 187, 436, 516, 784, 986, 1133, 1346, 1471
AluI	AGCT	9 cut(s)	43, 187, 436, 516, 784, 986, 1133, 1346, 1471
Alw26I	GTCTC	2 cut(s)	1083, 1408
AlwI	GGATC	2 cut(s)	2009, 2022
Ama87I	CYCGRG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	4 cut(s)	195, 364, 594, 1348
ApeKI	GCWGC	7 cut(s)	184, 222, 601, 757, 941, 1010, 1133
ApoI	RAATTY	5 cut(s)	454, 475, 661, 1763, 1994
AsiGI	ACCGGT	1 cut(s)	385
Asp700I	GAANNNNTTC	2 cut(s)	517, 1995
AspA2I	CCTAGG	1 cut(s)	1363
AspLEI	GCGC	3 cut(s)	129, 338, 757
AsuC2I	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1871
AsuHPI	GGTGA	1 cut(s)	1614
AsuII	TTCGAA	1 cut(s)	919
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	8 cut(s)	83, 90, 172, 260, 286, 397, 1213, 1276
AvrII	CCTAGG	1 cut(s)	1363
AxyI	CCTNAGG	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	1350
BamHI	GGATCC	1 cut(s)	2014
BanI	GGYRCC	1 cut(s)	335
BauI	CACGAG	3 cut(s)	134, 374, 1198
BbrPI	CACGTG	1 cut(s)	1814
BbsI	GAAGAC	1 cut(s)	894
BbvI	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
BccI	CCATC	2 cut(s)	1309, 2218
BceAI	ACGGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	4 cut(s)	170, 1263, 2019, 2244
BcnI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1871
BcoDI	GTCTC	2 cut(s)	1083, 1408
BfaI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
BfmI	CTRYAG	1 cut(s)	1134
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	2 cut(s)	751, 1257
BlnI	CCTAGG	1 cut(s)	1363
Bme18I	GGWCC	8 cut(s)	83, 90, 172, 260, 286, 397, 1213, 1276
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 2016
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	894
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpmI	CTGGAG	1 cut(s)	1985
Bpu10I	CCTNAGC	1 cut(s)	1536
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	2 cut(s)	980, 2015
BpuMI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1871
Bsa29I	ATCGAT	2 cut(s)	413, 770
BsaAI	YACGTR	1 cut(s)	1814
BsaHI	GRCGYC	2 cut(s)	105, 336
BsaWI	WCCGGW	2 cut(s)	262, 385
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 216, 217, 262, 389, 1450
Bse118I	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
Bse1I	ACTGG	3 cut(s)	1003, 1660, 2128
Bse21I	CCTNAGG	1 cut(s)	428
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	4 cut(s)	170, 1263, 2019, 2244
BseCI	ATCGAT	2 cut(s)	413, 770
BseGI	GGATG	2 cut(s)	976, 1667
BseLI	CCNNNNNNNGG	6 cut(s)	73, 216, 217, 262, 389, 1450
BseMII	CTCAG	3 cut(s)	419, 776, 1749
BseNI	ACTGG	3 cut(s)	1003, 1660, 2128
BseRI	GAGGAG	6 cut(s)	47, 727, 845, 1664, 1967, 2181
BseXI	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
BseYI	CCCAGC	1 cut(s)	908
BsgI	GTGCAG	1 cut(s)	545
Bsh1285I	CGRYCG	3 cut(s)	295, 319, 390
BshFI	GGCC	4 cut(s)	197, 366, 596, 1350
BshNI	GGYRCC	1 cut(s)	335
BshTI	ACCGGT	1 cut(s)	385
BshVI	ATCGAT	2 cut(s)	413, 770
BsiEI	CGRYCG	3 cut(s)	295, 319, 390
BsiHKCI	CYCGRG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	1332
BslI	CCNNNNNNNGG	6 cut(s)	73, 216, 217, 262, 389, 1450
BsmAI	GTCTC	2 cut(s)	1083, 1408
BsmFI	GGGAC	1 cut(s)	1332
BsnI	GGCC	4 cut(s)	197, 366, 596, 1350
BsoBI	CYCGRG	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	919
Bsp13I	TCCGGA	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	1649
Bsp143I	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	4 cut(s)	197, 366, 596, 1350
BspCNI	CTCAG	3 cut(s)	420, 777, 1750
BspDI	ATCGAT	2 cut(s)	413, 770
BspEI	TCCGGA	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 2016
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	2 cut(s)	751, 1257
BspPI	GGATC	2 cut(s)	2009, 2022
BspT104I	TTCGAA	1 cut(s)	919
BspT107I	GGYRCC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
BsrGI	TGTACA	1 cut(s)	1649
BsrI	ACTGG	3 cut(s)	1003, 1660, 2128
BssAI	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
BssMI	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
BssNI	GRCGYC	2 cut(s)	105, 336
BssSI	CACGAG	3 cut(s)	134, 374, 1198
BssT1I	CCWWGG	4 cut(s)	147, 282, 1363, 2052
Bst2BI	CACGAG	3 cut(s)	134, 374, 1198
Bst2UI	CCWGG	4 cut(s)	170, 1263, 2019, 2244
Bst4CI	ACNGT	7 cut(s)	889, 1419, 1507, 1740, 1889, 1947, 2063
Bst6I	CTCTTC	2 cut(s)	822, 848
BstACI	GRCGYC	2 cut(s)	105, 336
BstAUI	TGTACA	1 cut(s)	1649
BstBAI	YACGTR	1 cut(s)	1814
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	9 cut(s)	53, 131, 199, 955, 1057, 1178, 1348, 1941, 2154
BstDEI	CTNAG	5 cut(s)	428, 785, 845, 1536, 1758
BstDSI	CCRYGG	2 cut(s)	282, 1946
BstF5I	GGATG	2 cut(s)	976, 1667
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	129, 338, 757
BstKTI	GATC	5 cut(s)	319, 413, 1489, 2017, 2115
BstMAI	GTCTC	2 cut(s)	1083, 1408
BstMBI	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
BstMCI	CGRYCG	3 cut(s)	295, 319, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 513, 950, 1034, 1615, 2087
BstNI	CCWGG	4 cut(s)	170, 1263, 2019, 2244
BstNSI	RCATGY	1 cut(s)	1180
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	1134
BstV1I	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	2014
BstYI	RGATCY	1 cut(s)	2014
Bsu15I	ATCGAT	2 cut(s)	413, 770
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	4 cut(s)	197, 366, 596, 1350
BsuTUI	ATCGAT	2 cut(s)	413, 770
BtgI	CCRYGG	2 cut(s)	282, 1946
BtsCI	GGATG	2 cut(s)	976, 1667
BtsI	GCAGTG	1 cut(s)	2003
BtsIMutI	CAGTG	4 cut(s)	996, 1311, 1512, 2003
BveI	ACCTGC	2 cut(s)	751, 1257
Cac8I	GCNNGC	9 cut(s)	53, 131, 199, 955, 1057, 1178, 1348, 1941, 2154
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	3 cut(s)	129, 338, 757
Cfr10I	RCCGGY	5 cut(s)	51, 294, 385, 399, 992
Cfr9I	CCCGGG	1 cut(s)	256
ClaI	ATCGAT	2 cut(s)	413, 770
CpoI	CGGWCCG	1 cut(s)	397
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	1159, 1650
CspAI	ACCGGT	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	1554, 1589
CspI	CGGWCCG	1 cut(s)	397
CviQI	GTAC	2 cut(s)	1159, 1650
DdeI	CTNAG	5 cut(s)	428, 785, 845, 1536, 1758
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	5 cut(s)	318, 412, 1488, 2016, 2114
DpnII	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
DraI	TTTAAA	1 cut(s)	1207
DrdI	GACNNNNNNGTC	1 cut(s)	2066
DseDI	GACNNNNNNGTC	1 cut(s)	2066
EaeI	YGGCCR	1 cut(s)	1348
Eam1104I	CTCTTC	2 cut(s)	822, 848
EarI	CTCTTC	2 cut(s)	822, 848
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	4 cut(s)	147, 282, 1363, 2052
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	8 cut(s)	83, 90, 172, 260, 286, 397, 1213, 1276
Eco72I	CACGTG	1 cut(s)	1814
Eco81I	CCTNAGG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	1763
EcoRII	CCWGG	4 cut(s)	168, 1261, 2017, 2242
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	4 cut(s)	147, 282, 1363, 2052
EcoT22I	ATGCAT	1 cut(s)	733
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	4 cut(s)	147, 282, 1363, 2052
FaqI	GGGAC	1 cut(s)	1332
FauI	CCCGC	3 cut(s)	206, 252, 454
FokI	GGATG	2 cut(s)	983, 1654
FspBI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
FspI	TGCGCA	1 cut(s)	756
GlaI	GCGC	3 cut(s)	128, 337, 756
GsaI	CCCAGC	1 cut(s)	912
GsuI	CTGGAG	1 cut(s)	1985
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	4 cut(s)	197, 366, 596, 1350
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	3 cut(s)	129, 338, 757
Hin1I	GRCGYC	2 cut(s)	105, 336
Hin6I	GCGC	3 cut(s)	127, 336, 755
HinP1I	GCGC	3 cut(s)	127, 336, 755
HincII	GTYRAC	1 cut(s)	2059
HindII	GTYRAC	1 cut(s)	2059
HindIII	AAGCTT	1 cut(s)	41
HphI	GGTGA	1 cut(s)	1614
Hpy166II	GTNNAC	2 cut(s)	373, 2059
Hpy8I	GTNNAC	2 cut(s)	373, 2059
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	7 cut(s)	889, 1419, 1507, 1740, 1889, 1947, 2063
HpyCH4IV	ACGT	2 cut(s)	1222, 1813
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 513, 950, 1034, 1615, 2087
HpyF3I	CTNAG	5 cut(s)	428, 785, 845, 1536, 1758
HpySE526I	ACGT	2 cut(s)	1222, 1813
Hsp92I	GRCGYC	2 cut(s)	105, 336
HspAI	GCGC	3 cut(s)	127, 336, 755
KasI	GGCGCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
LmnI	GCTCC	3 cut(s)	60, 212, 1606
Lsp1109I	GCAGC	7 cut(s)	196, 234, 613, 769, 928, 997, 1120
MaeI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
MaeII	ACGT	2 cut(s)	1222, 1813
MaeIII	GTNAC	4 cut(s)	563, 1663, 1792, 1834
MalI	GATC	5 cut(s)	318, 412, 1488, 2016, 2114
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
MboII	GAAGA	7 cut(s)	25, 749, 839, 865, 894, 1676, 1908
MfeI	CAATTG	2 cut(s)	1781, 2175
MflI	RGATCY	1 cut(s)	2014
MlsI	TGGCCA	1 cut(s)	1350
MluNI	TGGCCA	1 cut(s)	1350
Mly113I	GGCGCC	1 cut(s)	336
MmeI	TCCRAC	4 cut(s)	211, 276, 375, 1171
Mox20I	TGGCCA	1 cut(s)	1350
Mph1103I	ATGCAT	1 cut(s)	733
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	2 cut(s)	517, 1995
MscI	TGGCCA	1 cut(s)	1350
MseI	TTAA	7 cut(s)	708, 726, 1206, 1331, 1542, 1973, 2219
MslI	CAYNNNNRTG	2 cut(s)	1175, 1850
Msp20I	TGGCCA	1 cut(s)	1350
MunI	CAATTG	2 cut(s)	1781, 2175
MvaI	CCWGG	4 cut(s)	170, 1263, 2019, 2244
MwoI	GCNNNNNNNGC	6 cut(s)	108, 513, 950, 1034, 1615, 2087
NaeI	GCCGGC	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	7 cut(s)	88, 99, 218, 257, 258, 368, 1871
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
NgoMIV	GCCGGC	1 cut(s)	51
NlaIV	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 2016
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	563
NsbI	TGCGCA	1 cut(s)	756
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	1180
NspV	TTCGAA	1 cut(s)	919
PaeI	GCATGC	1 cut(s)	1180
PagI	TCATGA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	2 cut(s)	517, 1995
PflMI	CCANNNNNTGG	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	385
Ple19I	CGATCG	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	1814
PmlI	CACGTG	1 cut(s)	1814
Ppu21I	YACGTR	1 cut(s)	1814
PshAI	GACNNNNGTC	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	1632
Psp6I	CCWGG	4 cut(s)	168, 1261, 2017, 2242
PspCI	CACGTG	1 cut(s)	1814
PspFI	CCCAGC	1 cut(s)	908
PspGI	CCWGG	4 cut(s)	168, 1261, 2017, 2242
PspN4I	GGNNCC	6 cut(s)	56, 85, 261, 288, 337, 2016
PsrI	GAACNNNNNNTAC	2 cut(s)	1866, 1898
PstI	CTGCAG	1 cut(s)	1138
PsuI	RGATCY	1 cut(s)	2014
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	1160, 1651
RsaNI	GTAC	2 cut(s)	1159, 1650
RseI	CAYNNNNRTG	2 cut(s)	1175, 1850
Rsr2I	CGGWCCG	1 cut(s)	397
RsrII	CGGWCCG	1 cut(s)	397
SaqAI	TTAA	7 cut(s)	708, 726, 1206, 1331, 1542, 1973, 2219
Sau3AI	GATC	5 cut(s)	316, 410, 1486, 2014, 2112
SfcI	CTRYAG	1 cut(s)	1134
SfoI	GGCGCC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	919
SinI	GGWCC	8 cut(s)	83, 90, 172, 260, 286, 397, 1213, 1276
SmaI	CCCGGG	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	1175, 1850
SmlI	CTYRAG	2 cut(s)	959, 2030
SmoI	CTYRAG	2 cut(s)	959, 2030
SphI	GCATGC	1 cut(s)	1180
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
StyI	CCWWGG	4 cut(s)	147, 282, 1363, 2052
TaaI	ACNGT	7 cut(s)	889, 1419, 1507, 1740, 1889, 1947, 2063
TaiI	ACGT	2 cut(s)	1225, 1816
TatI	WGTACW	1 cut(s)	1649
TauI	GCSGC	5 cut(s)	81, 105, 382, 1461, 2081
Tru1I	TTAA	7 cut(s)	708, 726, 1206, 1331, 1542, 1973, 2219
Tru9I	TTAA	7 cut(s)	708, 726, 1206, 1331, 1542, 1973, 2219
TscAI	CASTG	4 cut(s)	1003, 1311, 1512, 2010
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	7 cut(s)	184, 222, 601, 757, 941, 1010, 1133
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	9 cut(s)	313, 341, 1179, 1356, 1486, 1580, 1712, 1718, 1835
TspGWI	ACGGA	1 cut(s)	1679
TspMI	CCCGGG	1 cut(s)	256
TspRI	CASTG	4 cut(s)	1003, 1311, 1512, 2010
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	8 cut(s)	83, 90, 172, 260, 286, 397, 1213, 1276
XapI	RAATTY	5 cut(s)	454, 475, 661, 1763, 1994
XbaI	TCTAGA	2 cut(s)	1225, 1724
XceI	RCATGY	1 cut(s)	1180
XmaI	CCCGGG	1 cut(s)	256
XmaJI	CCTAGG	1 cut(s)	1363
XmnI	GAANNNNTTC	2 cut(s)	517, 1995
XspI	CTAG	7 cut(s)	27, 311, 927, 1226, 1358, 1364, 1725
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.