Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Reverse (-)

1201530 .. 1205022

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGTCCTCCGCCCTCCTCGAACGCCCCAGAATCTTCCCGAAGCTTCTATACCGGCTCCTCCTCACCCAAAACATGGGCGGCGGGCCCCGCACCTTCCCCGGCGGCGTCACCAAGTGGAAATGGAAGCGCATGCACGAGAAGCGCGCCAAGGACAAAGAGAGGCGCCTCCTCGACCAAGAGAAGCAGCTCTACGAGGCCCGCCTCCGCTCCCAAATCCGGGCCGAGCTCGTCGCCAAACCCGACCCGTTTCCCGACCCGGCTCACCACCGCCCCATGGACCCCGACCGCCACGTCAAATCCCTCGCCGATCGCTTCATGAAGCACGGCGCCGAGGATCTCTGGAACGAGAACGACGGCCCACTCCACGCGCCCCACGCGCCGCCTCCTCAGCAGCAGCAGCCGGTACGAGCGGGGTCAATTCCGGTTGACCTGAGGAGGCTGATACCGAAAGGTCGAAACTTGGCGGGAAATGAGAGGAGTTTGAGTAGCTATGTTAGCACTAGGAGCTATTCTGTGCATAGGTTTAGGAGGAACGATGATTCGAGTGATGATTCGGATTTCGATTCCGATAATGAGGCAATGCAGCCGTTTTGGGAGGGGAGGAATGGGAGCGAGGGTGCGAAATCGGAGAGGAGTTTGAGGAAATTTGGGAGTAGTGCTTCGTTGGGGAAGTATGATAGGAAGGTGATTAAGAGGAGAGTGCCTCTTAATGCAGTGGAAGAGGTGTGTGATGATTTCGTGCAGCAGGTGGAGTCGATTAGGTATGAGTTGAGTAGGAAAAAGGATGCCGAGAATGAAAGAGAGGAGAGTGTAGAGGAGGGGTCGGTTTTGAGTGAGAAGAGGTTTGATGAGTGTGGAATATCTCCGTTTACAGTGAAGGCGTTGTCTTCTGCTGGGTATGTTCGGATGACTAGAGTTCAGGAGGCTGCTCTTTCGGCTTGCCTTGAGGGAAAAGATGTTTTGGTCAAAGCTAAAACTGGCACGGGCAAAACTGCTGCCTTTTTGCTTCCTGCTATTGAAGCAGTTGTGAAGGGTATGGCTGGCAATACCAATCAACGGGTGTCTCCAATCTTTGTTCTTATCCTTTGCCCCACTAGAGAACTTGCAAGTCAGATAGCTGCAGAAACAAATGTCTTGTTGAAGTACCATGAGGGCATAGGCATGCAAACGTTAGTTGGGGGCACAAGATTCAAAGAGGACCAGAAACGTCTAGAATCAAATCCATGCCAGATAATAGTTGCAACTCCTGGTAGGTTGCTGGACCACATCGAGAATAGGTCTGGCTTGTCAGTGCGATTGATGGGACTGAAAATGTTAATACTTGATGAAGCTGGCCACTTACTAGACCTAGGATTTCGGAAGGACATAGAGAAAATTGTCGATTGTTTGCCTCGTAAGAGGCAGTCCTTGCTCTTTACTGCAACACTGCCAAAAGAGGTTCGCCGCATATCACAGCTTGTTTTGAAAAAAGATCATGCTTTCATTGACACAGTGGGATTGGGCAGTGTGGAAACTCATGCTAAGGTTAAGCAGTCATATCTTGTTGCACCACATGACTTGCATTTTCAGATAGTTCACCATCTGTTGAAGGAGCATATCTGGCAATCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACATTCTTCTCCGCGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAGCTGTATCGAACTCGTGTCTCTGAGGAATTTAAGGAATCAAAGCAAATGATTCTTGTTACCTCTGATGTATCAGCTCGTGGAATGAACTATCCTGATGTTACATTGGTCATTCAGGTGGGTATTCCAGCTGACCGGGAACAATATATACACCGTCTCGGAAGAACAGGACGGGAAGGCAAAGAAGGAGAAGGCATATTGTTGCTTGCGCCATGGGAGGAGTATTTTCTGGATGCATTAAAAGATTTGCCCCTTGAAAAATTTCCTTCAGTGCGATTGGATCCAGGCACTAAACTCAAGATTGAGGACTCAATGACCAAGGTAGACAGTAGTGTTAAGGAAGCCGCCTATCATGCTTGGCTTGGCTACTACAACTCGATCAGGGAAACTGGTAGGGATAAAACTACACTTGTTGAGCAAGCCAACCTCTTTTGTCAGTCAATTGGTTTGCAAAATCCTCCTTCTCTCTTTAGAAAGACAGCATTGAAGATGGGTTTGAAAGATATTCCTGGCATAAAAATACGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

750

Amino Acids

84.95

Weight (kDa)

9.37

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	303 - 477	3.5e-08	Type III restriction enzyme, res subunit
DEAD	PF00270	304 - 482	4.4e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	528 - 633	4e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1617
AarI	CACCTGC	1 cut(s)	736
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	736
AccB1I	GGYRCC	2 cut(s)	162, 326
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	2 cut(s)	207, 410
AccI	GTMKAC	1 cut(s)	2043
AccII	CGCG	4 cut(s)	144, 368, 377, 1677
AclI	AACGTT	1 cut(s)	1169
AclWI	GGATC	3 cut(s)	342, 1994, 2007
AcoI	YGGCCR	1 cut(s)	1333
AcsI	RAATTY	3 cut(s)	644, 1748, 1979
AcuI	CTGAAG	1 cut(s)	1971
AcyI	GRCGYC	3 cut(s)	105, 163, 327
AdeI	CACNNNGTG	1 cut(s)	114
AfaI	GTAC	3 cut(s)	405, 1145, 1636
AfiI	CCNNNNNNNGG	5 cut(s)	73, 216, 217, 274, 1056
AgsI	TTSAA	8 cut(s)	1019, 1141, 1192, 1465, 1588, 1976, 2206, 2218
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	3 cut(s)	1246, 2002, 2227
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	1068, 1744, 1880
AlwI	GGATC	3 cut(s)	342, 1994, 2007
AoxI	GGCC	5 cut(s)	83, 195, 219, 355, 1333
ApaI	GGGCCC	1 cut(s)	87
ApeKI	GCWGC	9 cut(s)	184, 391, 394, 397, 583, 742, 926, 995, 1118
ApoI	RAATTY	3 cut(s)	644, 1748, 1979
Asp700I	GAANNNNTTC	1 cut(s)	1980
AspA2I	CCTAGG	1 cut(s)	1348
AspLEI	GCGC	8 cut(s)	129, 144, 146, 165, 329, 370, 379, 1930
AspS9I	GGNCC	8 cut(s)	83, 84, 196, 219, 277, 356, 1198, 1261
AsuC2I	CCSGG	4 cut(s)	99, 218, 257, 1856
AsuHPI	GGTGA	6 cut(s)	55, 100, 254, 697, 1568, 1599
AvaII	GGWCC	3 cut(s)	277, 1198, 1261
AvrII	CCTAGG	1 cut(s)	1348
AxyI	CCTNAGG	1 cut(s)	431
BaeGI	GKGCMC	2 cut(s)	87, 1184
BalI	TGGCCA	1 cut(s)	1335
BamHI	GGATCC	1 cut(s)	1999
BanI	GGYRCC	2 cut(s)	162, 326
BanII	GRGCYC	2 cut(s)	87, 228
BarI	GAAGNNNNNNTAC	4 cut(s)	32, 64, 173, 205
BauI	CACGAG	3 cut(s)	134, 1734, 1797
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	228
BbvCI	CCTCAGC	2 cut(s)	387, 1719
BbvI	GCAGC	9 cut(s)	196, 403, 406, 409, 595, 754, 913, 982, 1105
BccI	CCATC	3 cut(s)	1294, 1587, 2203
BceAI	ACGGC	3 cut(s)	340, 370, 571
BciT130I	CCWGG	3 cut(s)	1248, 2004, 2229
BcnI	CCSGG	4 cut(s)	99, 218, 257, 1856
BcoDI	GTCTC	3 cut(s)	1068, 1744, 1880
BfaI	CTAG	7 cut(s)	501, 912, 1095, 1211, 1343, 1349, 1710
BfmI	CTRYAG	1 cut(s)	1119
BfoI	RGCGCY	2 cut(s)	166, 330
BfuAI	ACCTGC	1 cut(s)	736
BlnI	CCTAGG	1 cut(s)	1348
Bme1390I	CCNGG	7 cut(s)	99, 218, 257, 1248, 1856, 2004, 2229
Bme18I	GGWCC	3 cut(s)	277, 1198, 1261
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	8 cut(s)	83, 84, 196, 219, 277, 356, 1198, 1261
BmiI	GGNNCC	7 cut(s)	56, 85, 86, 164, 279, 328, 2001
BmrFI	CCNGG	7 cut(s)	99, 218, 257, 1248, 1856, 2004, 2229
BmsI	GCATC	2 cut(s)	775, 1942
BpiI	GAAGAC	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
Bpu10I	CCTNAGC	3 cut(s)	387, 1521, 1719
BpuEI	CTTGAG	2 cut(s)	965, 2000
BpuMI	CCSGG	4 cut(s)	99, 218, 257, 1856
BsaHI	GRCGYC	3 cut(s)	105, 163, 327
BsaJI	CCNNGG	7 cut(s)	97, 147, 273, 330, 1348, 1931, 2037
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	4 cut(s)	469, 499, 601, 631
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 216, 217, 274, 1056
Bse118I	RCCGGY	2 cut(s)	51, 400
Bse1I	ACTGG	3 cut(s)	982, 1645, 2113
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	1248, 2004, 2229
BseDI	CCNNGG	7 cut(s)	97, 147, 273, 330, 1348, 1931, 2037
BseGI	GGATG	4 cut(s)	790, 912, 1652, 1957
BseLI	CCNNNNNNNGG	5 cut(s)	73, 216, 217, 274, 1056
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	4 cut(s)	401, 422, 1733, 1734
BseNI	ACTGG	3 cut(s)	982, 1645, 2113
BsePI	GCGCGC	1 cut(s)	142
BseSI	GKGCMC	2 cut(s)	87, 1184
BseXI	GCAGC	9 cut(s)	196, 403, 406, 409, 595, 754, 913, 982, 1105
BseYI	CCCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	4 cut(s)	144, 368, 377, 1677
Bsh1285I	CGRYCG	2 cut(s)	286, 310
BshFI	GGCC	5 cut(s)	85, 197, 221, 357, 1335
BshNI	GGYRCC	2 cut(s)	162, 326
BsiEI	CGRYCG	2 cut(s)	286, 310
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	7 cut(s)	52, 99, 217, 257, 401, 422, 1855
BslFI	GGGAC	1 cut(s)	1317
BslI	CCNNNNNNNGG	5 cut(s)	73, 216, 217, 274, 1056
BsmAI	GTCTC	3 cut(s)	1068, 1744, 1880
BsmBI	CGTCTC	1 cut(s)	1880
BsmFI	GGGAC	1 cut(s)	1317
BsnI	GGCC	5 cut(s)	85, 197, 221, 357, 1335
Bsp120I	GGGCCC	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	87, 228, 1184
Bsp1407I	TGTACA	1 cut(s)	1634
Bsp143I	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
Bsp19I	CCATGG	2 cut(s)	273, 1931
BspANI	GGCC	5 cut(s)	85, 197, 221, 357, 1335
BspCNI	CTCAG	4 cut(s)	400, 423, 1732, 1735
BspFNI	CGCG	4 cut(s)	144, 368, 377, 1677
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	7 cut(s)	56, 85, 86, 164, 279, 328, 2001
BspMAI	CTGCAG	1 cut(s)	1123
BspMI	ACCTGC	1 cut(s)	736
BspPI	GGATC	3 cut(s)	342, 1994, 2007
BspT107I	GGYRCC	2 cut(s)	162, 326
BsrBI	CCGCTC	2 cut(s)	207, 410
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	2 cut(s)	51, 400
BsrGI	TGTACA	1 cut(s)	1634
BsrI	ACTGG	3 cut(s)	982, 1645, 2113
BssAI	RCCGGY	2 cut(s)	51, 400
BssECI	CCNNGG	7 cut(s)	97, 147, 273, 330, 1348, 1931, 2037
BssHII	GCGCGC	1 cut(s)	142
BssMI	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
BssNI	GRCGYC	3 cut(s)	105, 163, 327
BssSI	CACGAG	3 cut(s)	134, 1734, 1797
BssT1I	CCWWGG	5 cut(s)	147, 273, 1348, 1931, 2037
Bst2BI	CACGAG	3 cut(s)	134, 1734, 1797
Bst2UI	CCWGG	3 cut(s)	1248, 2004, 2229
Bst4CI	ACNGT	4 cut(s)	874, 1492, 1874, 2048
Bst6I	CTCTTC	2 cut(s)	714, 833
BstACI	GRCGYC	3 cut(s)	105, 163, 327
BstAPI	GCANNNNNTGC	1 cut(s)	1408
BstAUI	TGTACA	1 cut(s)	1634
BstDEI	CTNAG	5 cut(s)	387, 431, 1521, 1719, 1743
BstDSI	CCRYGG	2 cut(s)	273, 1931
BstF5I	GGATG	4 cut(s)	790, 912, 1652, 1957
BstFNI	CGCG	4 cut(s)	144, 368, 377, 1677
BstH2I	RGCGCY	2 cut(s)	166, 330
BstHHI	GCGC	8 cut(s)	129, 144, 146, 165, 329, 370, 379, 1930
BstKTI	GATC	5 cut(s)	310, 337, 1474, 2002, 2100
BstMAI	GTCTC	3 cut(s)	1068, 1744, 1880
BstMBI	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
BstMCI	CGRYCG	2 cut(s)	286, 310
BstNI	CCWGG	3 cut(s)	1248, 2004, 2229
BstNSI	RCATGY	2 cut(s)	133, 1165
BstSCI	CCNGG	7 cut(s)	97, 216, 255, 1246, 1854, 2002, 2227
BstSFI	CTRYAG	1 cut(s)	1119
BstSLI	GKGCMC	2 cut(s)	87, 1184
BstUI	CGCG	4 cut(s)	144, 368, 377, 1677
BstV1I	GCAGC	9 cut(s)	196, 403, 406, 409, 595, 754, 913, 982, 1105
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	334, 1999
BstYI	RGATCY	2 cut(s)	334, 1999
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	5 cut(s)	85, 197, 221, 357, 1335
BtgI	CCRYGG	2 cut(s)	273, 1931
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	790, 912, 1652, 1957
BtsI	GCAGTG	3 cut(s)	720, 1424, 1510
BtsIMutI	CAGTG	7 cut(s)	720, 879, 1296, 1424, 1497, 1510, 1995
BveI	ACCTGC	1 cut(s)	736
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	8 cut(s)	129, 144, 146, 165, 329, 370, 379, 1930
Cfr10I	RCCGGY	2 cut(s)	51, 400
Cfr13I	GGNCC	8 cut(s)	83, 84, 196, 219, 277, 356, 1198, 1261
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	404, 1144, 1635
CspCI	CAANNNNNGTGG	2 cut(s)	1539, 1574
CviQI	GTAC	3 cut(s)	404, 1144, 1635
DdeI	CTNAG	5 cut(s)	387, 431, 1521, 1719, 1743
DinI	GGCGCC	2 cut(s)	164, 328
DpnI	GATC	5 cut(s)	309, 336, 1473, 2001, 2099
DpnII	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
DraIII	CACNNNGTG	1 cut(s)	114
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	1333
Eam1104I	CTCTTC	2 cut(s)	714, 833
EarI	CTCTTC	2 cut(s)	714, 833
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	5 cut(s)	147, 273, 1348, 1931, 2037
Eco24I	GRGCYC	2 cut(s)	87, 228
Eco47I	GGWCC	3 cut(s)	277, 1198, 1261
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	1971
Eco81I	CCTNAGG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	3 cut(s)	1246, 2002, 2227
EcoT14I	CCWWGG	5 cut(s)	147, 273, 1348, 1931, 2037
EcoT22I	ATGCAT	1 cut(s)	1957
EcoT38I	GRGCYC	2 cut(s)	87, 228
EgeI	GGCGCC	2 cut(s)	164, 328
EheI	GGCGCC	2 cut(s)	164, 328
ErhI	CCWWGG	5 cut(s)	147, 273, 1348, 1931, 2037
Esp3I	CGTCTC	1 cut(s)	1880
FaqI	GGGAC	1 cut(s)	1317
FauI	CCCGC	5 cut(s)	74, 95, 206, 403, 457
FblI	GTMKAC	1 cut(s)	2043
FokI	GGATG	4 cut(s)	797, 919, 1639, 1964
FriOI	GRGCYC	2 cut(s)	87, 228
FspBI	CTAG	7 cut(s)	501, 912, 1095, 1211, 1343, 1349, 1710
GlaI	GCGC	8 cut(s)	128, 143, 145, 164, 328, 369, 378, 1929
GsaI	CCCAGC	1 cut(s)	897
HaeII	RGCGCY	2 cut(s)	166, 330
HaeIII	GGCC	5 cut(s)	85, 197, 221, 357, 1335
HapII	CCGG	7 cut(s)	52, 99, 217, 257, 401, 422, 1855
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	8 cut(s)	129, 144, 146, 165, 329, 370, 379, 1930
Hin1I	GRCGYC	3 cut(s)	105, 163, 327
Hin6I	GCGC	8 cut(s)	127, 142, 144, 163, 327, 368, 377, 1928
HinP1I	GCGC	8 cut(s)	127, 142, 144, 163, 327, 368, 377, 1928
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	41
HpaII	CCGG	7 cut(s)	52, 99, 217, 257, 401, 422, 1855
HphI	GGTGA	6 cut(s)	55, 100, 254, 697, 1568, 1599
Hpy166II	GTNNAC	4 cut(s)	427, 870, 1576, 2044
Hpy8I	GTNNAC	4 cut(s)	427, 870, 1576, 2044
Hpy99I	CGWCG	2 cut(s)	233, 356
HpyCH4III	ACNGT	4 cut(s)	874, 1492, 1874, 2048
HpyCH4IV	ACGT	3 cut(s)	291, 1169, 1207
HpyF3I	CTNAG	5 cut(s)	387, 431, 1521, 1719, 1743
HpySE526I	ACGT	3 cut(s)	291, 1169, 1207
Hsp92I	GRCGYC	3 cut(s)	105, 163, 327
HspAI	GCGC	8 cut(s)	127, 142, 144, 163, 327, 368, 377, 1928
KasI	GGCGCC	2 cut(s)	162, 326
Kzo9I	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
LmnI	GCTCC	5 cut(s)	60, 212, 504, 609, 1591
Lsp1109I	GCAGC	9 cut(s)	196, 403, 406, 409, 595, 754, 913, 982, 1105
LweI	GCATC	2 cut(s)	775, 1942
MaeI	CTAG	7 cut(s)	501, 912, 1095, 1211, 1343, 1349, 1710
MaeII	ACGT	3 cut(s)	291, 1169, 1207
MaeIII	GTNAC	4 cut(s)	106, 1648, 1777, 1819
MalI	GATC	5 cut(s)	309, 336, 1473, 2001, 2099
MbiI	CCGCTC	2 cut(s)	207, 410
MboI	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
MboII	GAAGA	7 cut(s)	25, 731, 850, 879, 1661, 1893, 2218
MfeI	CAATTG	1 cut(s)	2160
MflI	RGATCY	2 cut(s)	334, 1999
MhlI	GDGCHC	3 cut(s)	87, 228, 1184
MlsI	TGGCCA	1 cut(s)	1335
MluCI	AATT	6 cut(s)	417, 644, 1374, 1748, 1979, 2160
MluNI	TGGCCA	1 cut(s)	1335
Mly113I	GGCGCC	2 cut(s)	163, 327
MlyI	GAGTC	2 cut(s)	761, 2021
Mox20I	TGGCCA	1 cut(s)	1335
Mph1103I	ATGCAT	1 cut(s)	1957
MroXI	GAANNNNTTC	1 cut(s)	1980
MscI	TGGCCA	1 cut(s)	1335
MseI	TTAA	7 cut(s)	690, 708, 1316, 1527, 1752, 1958, 2055
MslI	CAYNNNNRTG	2 cut(s)	1160, 1835
Msp20I	TGGCCA	1 cut(s)	1335
MspA1I	CMGCKG	2 cut(s)	1723, 1850
MspI	CCGG	7 cut(s)	52, 99, 217, 257, 401, 422, 1855
MspR9I	CCNGG	7 cut(s)	99, 218, 257, 1248, 1856, 2004, 2229
MunI	CAATTG	1 cut(s)	2160
MvaI	CCWGG	3 cut(s)	1248, 2004, 2229
MvnI	CGCG	4 cut(s)	144, 368, 377, 1677
NarI	GGCGCC	2 cut(s)	163, 327
NciI	CCSGG	4 cut(s)	99, 218, 257, 1856
NcoI	CCATGG	2 cut(s)	273, 1931
NdeII	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
NlaIV	GGNNCC	7 cut(s)	56, 85, 86, 164, 279, 328, 2001
NmeAIII	GCCGAG	3 cut(s)	247, 355, 814
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	1957
NspI	RCATGY	2 cut(s)	133, 1165
PaeI	GCATGC	2 cut(s)	133, 1165
PagI	TCATGA	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	736
PauI	GCGCGC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	1980
PfeI	GAWTC	8 cut(s)	30, 539, 551, 563, 1188, 1214, 1757, 1771
PflMI	CCANNNNNTGG	1 cut(s)	73
Ple19I	CGATCG	1 cut(s)	310
PleI	GAGTC	2 cut(s)	760, 2021
PluTI	GGCGCC	2 cut(s)	166, 330
PpsI	GAGTC	2 cut(s)	760, 2021
PsiI	TTATAA	1 cut(s)	1617
Psp124BI	GAGCTC	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	1169
Psp6I	CCWGG	3 cut(s)	1246, 2002, 2227
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	3 cut(s)	1246, 2002, 2227
PspN4I	GGNNCC	7 cut(s)	56, 85, 86, 164, 279, 328, 2001
PspOMI	GGGCCC	1 cut(s)	83
PspPI	GGNCC	8 cut(s)	83, 84, 196, 219, 277, 356, 1198, 1261
PsrI	GAACNNNNNNTAC	2 cut(s)	1851, 1883
PstI	CTGCAG	1 cut(s)	1123
PsuI	RGATCY	2 cut(s)	334, 1999
PteI	GCGCGC	1 cut(s)	142
PvuI	CGATCG	1 cut(s)	310
PvuII	CAGCTG	2 cut(s)	1723, 1850
RsaI	GTAC	3 cut(s)	405, 1145, 1636
RsaNI	GTAC	3 cut(s)	404, 1144, 1635
RseI	CAYNNNNRTG	2 cut(s)	1160, 1835
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	7 cut(s)	690, 708, 1316, 1527, 1752, 1958, 2055
Sau3AI	GATC	5 cut(s)	307, 334, 1471, 1999, 2097
Sau96I	GGNCC	8 cut(s)	83, 84, 196, 219, 277, 356, 1198, 1261
SchI	GAGTC	2 cut(s)	761, 2021
ScrFI	CCNGG	7 cut(s)	99, 218, 257, 1248, 1856, 2004, 2229
SduI	GDGCHC	3 cut(s)	87, 228, 1184
SfaNI	GCATC	2 cut(s)	775, 1942
SfcI	CTRYAG	1 cut(s)	1119
SfoI	GGCGCC	2 cut(s)	164, 328
SinI	GGWCC	3 cut(s)	277, 1198, 1261
SmiMI	CAYNNNNRTG	2 cut(s)	1160, 1835
SmlI	CTYRAG	2 cut(s)	944, 2015
SmoI	CTYRAG	2 cut(s)	944, 2015
SphI	GCATGC	2 cut(s)	133, 1165
Sse9I	AATT	6 cut(s)	417, 644, 1374, 1748, 1979, 2160
SspDI	GGCGCC	2 cut(s)	162, 326
SspMI	CTAG	7 cut(s)	501, 912, 1095, 1211, 1343, 1349, 1710
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	7 cut(s)	97, 216, 255, 1246, 1854, 2002, 2227
StyI	CCWWGG	5 cut(s)	147, 273, 1348, 1931, 2037
TaaI	ACNGT	4 cut(s)	874, 1492, 1874, 2048
TaiI	ACGT	3 cut(s)	294, 1172, 1210
TasI	AATT	6 cut(s)	417, 644, 1374, 1748, 1979, 2160
TatI	WGTACW	1 cut(s)	1634
TauI	GCSGC	5 cut(s)	81, 105, 382, 1446, 2066
TfiI	GAWTC	8 cut(s)	30, 539, 551, 563, 1188, 1214, 1757, 1771
Tru1I	TTAA	7 cut(s)	690, 708, 1316, 1527, 1752, 1958, 2055
Tru9I	TTAA	7 cut(s)	690, 708, 1316, 1527, 1752, 1958, 2055
TscAI	CASTG	7 cut(s)	720, 879, 1296, 1431, 1497, 1510, 1995
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	9 cut(s)	184, 391, 394, 397, 583, 742, 926, 995, 1118
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	8 cut(s)	304, 332, 810, 1341, 1471, 1697, 1703, 1820
TspGWI	ACGGA	1 cut(s)	855
TspRI	CASTG	7 cut(s)	720, 879, 1296, 1431, 1497, 1510, 1995
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	3 cut(s)	277, 1198, 1261
XapI	RAATTY	3 cut(s)	644, 1748, 1979
XbaI	TCTAGA	2 cut(s)	1210, 1709
XceI	RCATGY	2 cut(s)	133, 1165
XmaJI	CCTAGG	1 cut(s)	1348
XmiI	GTMKAC	1 cut(s)	2043
XmnI	GAANNNNTTC	1 cut(s)	1980
XspI	CTAG	7 cut(s)	501, 912, 1095, 1211, 1343, 1349, 1710
Zsp2I	ATGCAT	1 cut(s)	1957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.