pycom06g07520

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
12292630 .. 12295749
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07520.9

Sequence Viewer

Length: 1344 bp
ATGACAAGGGTACAGGAGGCTGCTGTTTCTGTTTGCCTTGAAGGAAAAGATGCGTTGGTCAAAGCTAAAACAGGCACAGGCAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAGCAGTTGTGAAGGCTATGGCTAGCAATACCAATCAACGGCTGTCTCCAGTTTTTGTTCTTATCCTCTGTCCCACAAGAGAACTCGCAAGTCAGATAGCTGCAGAGACAAATGTTTTGTTGCGGTACCATGATGGCATAGGTATGCAAACACTAGTTGGAGGCACGCGATTCAAAGAAGACCAGAAACGTCTGGAATCAAATCCATGCCAGATAATAGTTGCAACCCCTGGCAGGTTGCTAGACCACATTGAGAATAAATCAGGCTTGTCTGTGCGGTTGATGGGACTGAAAATGCTAATACTCGATGAAGCGGGCCACTTACTAGACCTAGGATTTCGAAAGGATATAGAGAAAATTGTTGACTGTTTGCCTCGTCGAAGGCAGTCCTTGCTCTTTACTGCAACACTTCCAAAAGAGGTTCGCCGAGTATCACAGCTTGTTTTGCAAAAGGACCATATTTTCGTTGACACAGTGGGTTTAGGTTTTGTTGAAACTCATGCTAAGGTTAAGCAGTCATGTTTTGTTGCACCACATGAATTACATTTCCAAATAGTGCACCAGCTTCTGATGGAACATATCTCAGAGTCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTATCATGTTCTCCGTGAAATGAAAATGAATGTCAAGGAGATACATTCTAGGAAGCCTCAACTCTATCGAACTCGCGTCTCTGAGGAATTCAGGGTATTGAAACGACTGATTCTTGTTACCTCTGATGTATCGGCACGTGGAATGAACTATCCTGATGTGACCTTGGTCATTCAGGTAGGTATTCCTTCTGACCGGGAACAATATATACATCGTCTTGGAAGAGCAGGAAGGGAGGGTAAAGAAGGACGAGGCATATTGTTACTTGCACCATGGGAGGAGTATTTTCTGGATGAATTAAAAGATTTGCCTGTGGAAAAATTTCCTTCGCTGCAATTGGATCGGGATACTAAGCTTAAGATTGACGACTCGATGACCAAGATTGACACTAGCATCAAAGAAGCAGCATTTCATGCTTGGCTGGGGTATTATAACTCGATCAGGGAAACTGGCAGGGATAAGACCACACTTGTTGAGCAAGCCAACAAATTTTGTGAGTCAATTGGTTTGCAAAAACCTCCTTCTCTCTTTAGAAAGACAGCCTTGAAGATGGGTTTGAAAGACATACCTGGCATAAGAATACGAAAGTAG

Protein Analysis

448

Amino Acids

50.53

Weight (kDa)

9.31

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012029)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 711, 1185
Acc36I ACCTGC 1 cut(s) 336
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AccII CGCG 2 cut(s) 280, 831
AciI CCGC 3 cut(s) 235, 388, 425
AclWI GGATC 1 cut(s) 1101
AcsI RAATTY 3 cut(s) 842, 1073, 1241
AcvI CACGTG 1 cut(s) 893
AfaI GTAC 3 cut(s) 12, 239, 730
AfiI CCNNNNNNNGG 2 cut(s) 150, 345
AflII CTTAAG 1 cut(s) 1109
AgsI TTSAA 7 cut(s) 41, 113, 286, 605, 856, 1300, 1312
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 2 cut(s) 340, 1321
AluBI AGCT 6 cut(s) 65, 92, 212, 550, 676, 1108
AluI AGCT 6 cut(s) 65, 92, 212, 550, 676, 1108
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 3 cut(s) 162, 212, 838
Alw44I GTGCAC 1 cut(s) 668
AlwI GGATC 1 cut(s) 1101
AlwNI CAGNNNCTG 1 cut(s) 679
AoxI GGCC 1 cut(s) 427
ApaLI GTGCAC 1 cut(s) 668
ApeKI GCWGC 5 cut(s) 20, 89, 212, 1084, 1157
ApoI RAATTY 3 cut(s) 842, 1073, 1241
ArsI GACNNNNNNTTYG 4 cut(s) 211, 243, 557, 589
Asp700I GAANNNNTTC 1 cut(s) 1074
Asp718I GGTACC 1 cut(s) 237
AspA2I CCTAGG 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 427, 565
AsuC2I CCSGG 1 cut(s) 950
AsuHPI GGTGA 1 cut(s) 693
AsuII TTCGAA 1 cut(s) 451
AsuNHI GCTAGC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 565
AvrII CCTAGG 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 893
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 5 cut(s) 7, 101, 199, 1071, 1169
BccI CCATC 4 cut(s) 239, 388, 676, 1297
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 1076, 1110
BciT130I CCWGG 2 cut(s) 342, 1323
BciVI GTATCC 1 cut(s) 1093
BcnI CCSGG 1 cut(s) 950
BcoDI GTCTC 3 cut(s) 162, 212, 838
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 7 cut(s) 135, 266, 353, 437, 443, 804, 1143
BfmI CTRYAG 2 cut(s) 87, 213
BfrI CTTAAG 1 cut(s) 1109
BfuAI ACCTGC 1 cut(s) 336
BfuI GTATCC 1 cut(s) 1093
BisI GCNGC 5 cut(s) 21, 90, 213, 1085, 1158
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 5 cut(s) 22, 91, 214, 1086, 1159
Bme1390I CCNGG 3 cut(s) 342, 950, 1323
Bme18I GGWCC 1 cut(s) 565
BmgT120I GGNCC 2 cut(s) 427, 565
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 3 cut(s) 342, 950, 1323
BmsI GCATC 2 cut(s) 40, 1155
BmtI GCTAGC 1 cut(s) 138
BoxI GACNNNNGTC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 950
BsaAI YACGTR 1 cut(s) 893
BsaJI CCNNGG 4 cut(s) 340, 442, 918, 1025
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 345
Bse1I ACTGG 3 cut(s) 161, 739, 1207
BseBI CCWGG 2 cut(s) 342, 1323
BseDI CCNNGG 4 cut(s) 340, 442, 918, 1025
BseGI GGATG 2 cut(s) 746, 1051
BseLI CCNNNNNNNGG 2 cut(s) 150, 345
BseMII CTCAG 2 cut(s) 708, 828
BseNI ACTGG 3 cut(s) 161, 739, 1207
BseRI GAGGAG 2 cut(s) 743, 1046
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 5 cut(s) 7, 101, 199, 1071, 1169
BseYI CCCAGC 1 cut(s) 1174
Bsh1236I CGCG 2 cut(s) 280, 831
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 672
BsiSI CCGG 1 cut(s) 949
BslFI GGGAC 2 cut(s) 168, 411
BslI CCNNNNNNNGG 2 cut(s) 150, 345
BsmAI GTCTC 3 cut(s) 162, 212, 838
BsmBI CGTCTC 1 cut(s) 838
BsmFI GGGAC 2 cut(s) 168, 411
BsnI GGCC 1 cut(s) 429
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 672
Bsp1407I TGTACA 1 cut(s) 728
Bsp143I GATC 2 cut(s) 1093, 1191
Bsp19I CCATGG 1 cut(s) 1025
BspACI CCGC 3 cut(s) 235, 388, 425
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 2 cut(s) 707, 829
BspFNI CGCG 2 cut(s) 280, 831
BspLI GGNNCC 1 cut(s) 239
BspMAI CTGCAG 2 cut(s) 91, 217
BspMI ACCTGC 1 cut(s) 336
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 1 cut(s) 1101
BspQI GCTCTTC 1 cut(s) 970
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 237
BspTI CTTAAG 1 cut(s) 1109
BsrGI TGTACA 1 cut(s) 728
BsrI ACTGG 3 cut(s) 161, 739, 1207
BssECI CCNNGG 4 cut(s) 340, 442, 918, 1025
BssMI GATC 2 cut(s) 1093, 1191
BssT1I CCWWGG 3 cut(s) 442, 918, 1025
Bst2UI CCWGG 2 cut(s) 342, 1323
Bst4CI ACNGT 2 cut(s) 479, 586
Bst6I CTCTTC 1 cut(s) 970
BstAFI CTTAAG 1 cut(s) 1109
BstAPI GCANNNNNTGC 2 cut(s) 502, 1166
BstAUI TGTACA 1 cut(s) 728
BstBAI YACGTR 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 136, 278, 427, 1233
BstDEI CTNAG 4 cut(s) 615, 694, 837, 1104
BstDSI CCRYGG 1 cut(s) 1025
BstF5I GGATG 2 cut(s) 746, 1051
BstFNI CGCG 2 cut(s) 280, 831
BstKTI GATC 2 cut(s) 1096, 1194
BstMAI GTCTC 3 cut(s) 162, 212, 838
BstMBI GATC 2 cut(s) 1093, 1191
BstMWI GCNNNNNNNGC 4 cut(s) 113, 502, 556, 1166
BstNI CCWGG 2 cut(s) 342, 1323
BstPAI GACNNNNGTC 1 cut(s) 920
BstSCI CCNGG 3 cut(s) 340, 948, 1321
BstSFI CTRYAG 2 cut(s) 87, 213
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 2 cut(s) 280, 831
BstV1I GCAGC 5 cut(s) 7, 101, 199, 1071, 1169
BstV2I GAAGAC 1 cut(s) 297
BsuI GTATCC 1 cut(s) 1093
BsuRI GGCC 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 2 cut(s) 746, 1051
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 336
Cac8I GCNNGC 4 cut(s) 136, 278, 427, 1233
CaiI CAGNNNCTG 1 cut(s) 679
Cfr13I GGNCC 2 cut(s) 427, 565
CseI GACGC 1 cut(s) 820
Csp6I GTAC 3 cut(s) 11, 238, 729
CspCI CAANNNNNGTGG 2 cut(s) 1207, 1242
CviAII CATG 8 cut(s) 242, 318, 611, 630, 647, 761, 1026, 1166
CviQI GTAC 3 cut(s) 11, 238, 729
DdeI CTNAG 4 cut(s) 615, 694, 837, 1104
DpnI GATC 2 cut(s) 1095, 1193
DpnII GATC 2 cut(s) 1093, 1191
Eam1104I CTCTTC 1 cut(s) 970
EarI CTCTTC 1 cut(s) 970
Eco130I CCWWGG 3 cut(s) 442, 918, 1025
Eco47I GGWCC 1 cut(s) 565
Eco72I CACGTG 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 842
EcoRII CCWGG 2 cut(s) 340, 1321
EcoT14I CCWWGG 3 cut(s) 442, 918, 1025
ErhI CCWWGG 3 cut(s) 442, 918, 1025
Esp3I CGTCTC 1 cut(s) 838
FaeI CATG 8 cut(s) 245, 321, 614, 633, 650, 764, 1029, 1169
FalI AAGNNNNNCTT 2 cut(s) 1280, 1312
FaqI GGGAC 2 cut(s) 168, 411
FatI CATG 8 cut(s) 241, 317, 610, 629, 646, 760, 1025, 1165
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 5 cut(s) 21, 90, 213, 1085, 1158
FokI GGATG 2 cut(s) 733, 1058
Fsp4HI GCNGC 5 cut(s) 21, 90, 213, 1085, 1158
FspBI CTAG 7 cut(s) 135, 266, 353, 437, 443, 804, 1143
GluI GCNGC 5 cut(s) 21, 90, 213, 1085, 1158
GsaI CCCAGC 1 cut(s) 1178
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 429
HapII CCGG 1 cut(s) 949
HgaI GACGC 1 cut(s) 820
Hin1II CATG 8 cut(s) 245, 321, 614, 633, 650, 764, 1029, 1169
HincII GTYRAC 2 cut(s) 475, 580
HindII GTYRAC 2 cut(s) 475, 580
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 6 cut(s) 282, 308, 698, 865, 1121, 1250
HpaII CCGG 1 cut(s) 949
HphI GGTGA 1 cut(s) 693
Hpy166II GTNNAC 3 cut(s) 475, 580, 670
Hpy188I TCNGA 6 cut(s) 207, 681, 697, 838, 880, 946
Hpy188III TCNNGA 4 cut(s) 305, 908, 1043, 1097
Hpy8I GTNNAC 3 cut(s) 475, 580, 670
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 8 cut(s) 35, 118, 486, 951, 978, 992, 1089, 1284
HpyCH4III ACNGT 2 cut(s) 479, 586
HpyCH4IV ACGT 2 cut(s) 301, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 502, 556, 1166
HpyF3I CTNAG 4 cut(s) 615, 694, 837, 1104
HpySE526I ACGT 2 cut(s) 301, 892
Hsp92II CATG 8 cut(s) 245, 321, 614, 633, 650, 764, 1029, 1169
KpnI GGTACC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 1093, 1191
LguI GCTCTTC 1 cut(s) 970
Lsp1109I GCAGC 5 cut(s) 7, 101, 199, 1071, 1169
LweI GCATC 2 cut(s) 40, 1155
MaeI CTAG 7 cut(s) 135, 266, 353, 437, 443, 804, 1143
MaeII ACGT 2 cut(s) 301, 892
MaeIII GTNAC 5 cut(s) 699, 742, 871, 913, 1014
MalI GATC 2 cut(s) 1095, 1193
MboI GATC 2 cut(s) 1093, 1191
MboII GAAGA 3 cut(s) 302, 987, 1312
MfeI CAATTG 2 cut(s) 1088, 1254
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 8 cut(s) 468, 650, 842, 1049, 1073, 1088, 1241, 1254
MlyI GAGTC 3 cut(s) 707, 1115, 1259
MmeI TCCRAC 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 3 cut(s) 621, 1052, 1110
MslI CAYNNNNRTG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 1109
MspI CCGG 1 cut(s) 949
MspR9I CCNGG 3 cut(s) 342, 950, 1323
MunI CAATTG 2 cut(s) 1088, 1254
MvaI CCWGG 2 cut(s) 342, 1323
MvnI CGCG 2 cut(s) 280, 831
MwoI GCNNNNNNNGC 4 cut(s) 113, 502, 556, 1166
NciI CCSGG 1 cut(s) 950
NcoI CCATGG 1 cut(s) 1025
NdeII GATC 2 cut(s) 1093, 1191
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 8 cut(s) 245, 321, 614, 633, 650, 764, 1029, 1169
NlaIV GGNNCC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 563
NmuCI GTSAC 2 cut(s) 699, 913
NspV TTCGAA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 970
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 3 cut(s) 282, 308, 865
PkrI GCNGC 5 cut(s) 22, 91, 214, 1086, 1159
PleI GAGTC 3 cut(s) 706, 1115, 1258
PmaCI CACGTG 1 cut(s) 893
PmlI CACGTG 1 cut(s) 893
PpsI GAGTC 3 cut(s) 706, 1115, 1258
Ppu21I YACGTR 1 cut(s) 893
PshAI GACNNNNGTC 1 cut(s) 920
PsiI TTATAA 2 cut(s) 711, 1185
Psp6I CCWGG 2 cut(s) 340, 1321
PspCI CACGTG 1 cut(s) 893
PspFI CCCAGC 1 cut(s) 1174
PspGI CCWGG 2 cut(s) 340, 1321
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 427, 565
PsrI GAACNNNNNNTAC 2 cut(s) 945, 977
PstI CTGCAG 2 cut(s) 91, 217
PstNI CAGNNNCTG 1 cut(s) 679
RsaI GTAC 3 cut(s) 12, 239, 730
RsaNI GTAC 3 cut(s) 11, 238, 729
RseI CAYNNNNRTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 970
SaqAI TTAA 3 cut(s) 621, 1052, 1110
SatI GCNGC 5 cut(s) 21, 90, 213, 1085, 1158
Sau3AI GATC 2 cut(s) 1093, 1191
Sau96I GGNCC 2 cut(s) 427, 565
SchI GAGTC 3 cut(s) 707, 1115, 1259
ScrFI CCNGG 3 cut(s) 342, 950, 1323
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 2 cut(s) 40, 1155
SfcI CTRYAG 2 cut(s) 87, 213
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 8 cut(s) 468, 650, 842, 1049, 1073, 1088, 1241, 1254
SsiI CCGC 3 cut(s) 235, 388, 425
SspMI CTAG 7 cut(s) 135, 266, 353, 437, 443, 804, 1143
StyD4I CCNGG 3 cut(s) 340, 948, 1321
StyI CCWWGG 3 cut(s) 442, 918, 1025
TaaI ACNGT 2 cut(s) 479, 586
TaiI ACGT 2 cut(s) 304, 895
TaqI TCGA 6 cut(s) 417, 451, 490, 823, 1124, 1190
TasI AATT 8 cut(s) 468, 650, 842, 1049, 1073, 1088, 1241, 1254
TatI WGTACW 1 cut(s) 728
TfiI GAWTC 3 cut(s) 282, 308, 865
Tru1I TTAA 3 cut(s) 621, 1052, 1110
Tru9I TTAA 3 cut(s) 621, 1052, 1110
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 2 cut(s) 699, 913
TseI GCWGC 5 cut(s) 20, 89, 212, 1084, 1157
Tsp45I GTSAC 2 cut(s) 699, 913
TspDTI ATGAA 7 cut(s) 435, 663, 791, 797, 914, 1062, 1154
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 1 cut(s) 591
Vha464I CTTAAG 1 cut(s) 1109
VneI GTGCAC 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 565
XapI RAATTY 3 cut(s) 842, 1073, 1241
XmaJI CCTAGG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 7 cut(s) 135, 266, 353, 437, 443, 804, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.