DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63250 AT2G07750 AT5G08620 |
| fragaria_vesca | FvH4_5g01920 |
| malus_domestica | MD06G1077400.v1.1 |
| prunus_persica | Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 |
| pyrus_communis | pycom06g07520 |
| rosa_chinensis | RchiOBHm_Chr7g0198601 |
| rosa_laevigata | RLG00000003858 |
| rosa_multiflora | Rmu_sc0004229.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00257630 |
| rosa_rugosa | Rorug07G0048400 |
| rosa_samantha | Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400 |
| rosa_wichuraiana | Rw7G015080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 711, 1185 |
| Acc36I | ACCTGC | 1 cut(s) | 336 |
| Acc65I | GGTACC | 1 cut(s) | 237 |
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AccII | CGCG | 2 cut(s) | 280, 831 |
| AciI | CCGC | 3 cut(s) | 235, 388, 425 |
| AclWI | GGATC | 1 cut(s) | 1101 |
| AcsI | RAATTY | 3 cut(s) | 842, 1073, 1241 |
| AcvI | CACGTG | 1 cut(s) | 893 |
| AfaI | GTAC | 3 cut(s) | 12, 239, 730 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 150, 345 |
| AflII | CTTAAG | 1 cut(s) | 1109 |
| AgsI | TTSAA | 7 cut(s) | 41, 113, 286, 605, 856, 1300, 1312 |
| AhlI | ACTAGT | 1 cut(s) | 265 |
| AjnI | CCWGG | 2 cut(s) | 340, 1321 |
| AluBI | AGCT | 6 cut(s) | 65, 92, 212, 550, 676, 1108 |
| AluI | AGCT | 6 cut(s) | 65, 92, 212, 550, 676, 1108 |
| Alw21I | GWGCWC | 1 cut(s) | 672 |
| Alw26I | GTCTC | 3 cut(s) | 162, 212, 838 |
| Alw44I | GTGCAC | 1 cut(s) | 668 |
| AlwI | GGATC | 1 cut(s) | 1101 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 679 |
| AoxI | GGCC | 1 cut(s) | 427 |
| ApaLI | GTGCAC | 1 cut(s) | 668 |
| ApeKI | GCWGC | 5 cut(s) | 20, 89, 212, 1084, 1157 |
| ApoI | RAATTY | 3 cut(s) | 842, 1073, 1241 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 211, 243, 557, 589 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1074 |
| Asp718I | GGTACC | 1 cut(s) | 237 |
| AspA2I | CCTAGG | 1 cut(s) | 442 |
| AspS9I | GGNCC | 2 cut(s) | 427, 565 |
| AsuC2I | CCSGG | 1 cut(s) | 950 |
| AsuHPI | GGTGA | 1 cut(s) | 693 |
| AsuII | TTCGAA | 1 cut(s) | 451 |
| AsuNHI | GCTAGC | 1 cut(s) | 134 |
| AvaII | GGWCC | 1 cut(s) | 565 |
| AvrII | CCTAGG | 1 cut(s) | 442 |
| BaeGI | GKGCMC | 1 cut(s) | 672 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BbrPI | CACGTG | 1 cut(s) | 893 |
| BbsI | GAAGAC | 1 cut(s) | 297 |
| Bbv12I | GWGCWC | 1 cut(s) | 672 |
| BbvI | GCAGC | 5 cut(s) | 7, 101, 199, 1071, 1169 |
| BccI | CCATC | 4 cut(s) | 239, 388, 676, 1297 |
| BceAI | ACGGC | 1 cut(s) | 167 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1076, 1110 |
| BciT130I | CCWGG | 2 cut(s) | 342, 1323 |
| BciVI | GTATCC | 1 cut(s) | 1093 |
| BcnI | CCSGG | 1 cut(s) | 950 |
| BcoDI | GTCTC | 3 cut(s) | 162, 212, 838 |
| BcuI | ACTAGT | 1 cut(s) | 265 |
| BfaI | CTAG | 7 cut(s) | 135, 266, 353, 437, 443, 804, 1143 |
| BfmI | CTRYAG | 2 cut(s) | 87, 213 |
| BfrI | CTTAAG | 1 cut(s) | 1109 |
| BfuAI | ACCTGC | 1 cut(s) | 336 |
| BfuI | GTATCC | 1 cut(s) | 1093 |
| BisI | GCNGC | 5 cut(s) | 21, 90, 213, 1085, 1158 |
| BlnI | CCTAGG | 1 cut(s) | 442 |
| BlsI | GCNGC | 5 cut(s) | 22, 91, 214, 1086, 1159 |
| Bme1390I | CCNGG | 3 cut(s) | 342, 950, 1323 |
| Bme18I | GGWCC | 1 cut(s) | 565 |
| BmgT120I | GGNCC | 2 cut(s) | 427, 565 |
| BmiI | GGNNCC | 1 cut(s) | 239 |
| BmrFI | CCNGG | 3 cut(s) | 342, 950, 1323 |
| BmsI | GCATC | 2 cut(s) | 40, 1155 |
| BmtI | GCTAGC | 1 cut(s) | 138 |
| BoxI | GACNNNNGTC | 1 cut(s) | 920 |
| BpiI | GAAGAC | 1 cut(s) | 297 |
| BpmI | CTGGAG | 1 cut(s) | 144 |
| Bpu10I | CCTNAGC | 1 cut(s) | 615 |
| Bpu14I | TTCGAA | 1 cut(s) | 451 |
| BpuMI | CCSGG | 1 cut(s) | 950 |
| BsaAI | YACGTR | 1 cut(s) | 893 |
| BsaJI | CCNNGG | 4 cut(s) | 340, 442, 918, 1025 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 150, 345 |
| Bse1I | ACTGG | 3 cut(s) | 161, 739, 1207 |
| BseBI | CCWGG | 2 cut(s) | 342, 1323 |
| BseDI | CCNNGG | 4 cut(s) | 340, 442, 918, 1025 |
| BseGI | GGATG | 2 cut(s) | 746, 1051 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 150, 345 |
| BseMII | CTCAG | 2 cut(s) | 708, 828 |
| BseNI | ACTGG | 3 cut(s) | 161, 739, 1207 |
| BseRI | GAGGAG | 2 cut(s) | 743, 1046 |
| BseSI | GKGCMC | 1 cut(s) | 672 |
| BseXI | GCAGC | 5 cut(s) | 7, 101, 199, 1071, 1169 |
| BseYI | CCCAGC | 1 cut(s) | 1174 |
| Bsh1236I | CGCG | 2 cut(s) | 280, 831 |
| BshFI | GGCC | 1 cut(s) | 429 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BsiHKAI | GWGCWC | 1 cut(s) | 672 |
| BsiSI | CCGG | 1 cut(s) | 949 |
| BslFI | GGGAC | 2 cut(s) | 168, 411 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 150, 345 |
| BsmAI | GTCTC | 3 cut(s) | 162, 212, 838 |
| BsmBI | CGTCTC | 1 cut(s) | 838 |
| BsmFI | GGGAC | 2 cut(s) | 168, 411 |
| BsnI | GGCC | 1 cut(s) | 429 |
| Bsp119I | TTCGAA | 1 cut(s) | 451 |
| Bsp1286I | GDGCHC | 1 cut(s) | 672 |
| Bsp1407I | TGTACA | 1 cut(s) | 728 |
| Bsp143I | GATC | 2 cut(s) | 1093, 1191 |
| Bsp19I | CCATGG | 1 cut(s) | 1025 |
| BspACI | CCGC | 3 cut(s) | 235, 388, 425 |
| BspANI | GGCC | 1 cut(s) | 429 |
| BspCNI | CTCAG | 2 cut(s) | 707, 829 |
| BspFNI | CGCG | 2 cut(s) | 280, 831 |
| BspLI | GGNNCC | 1 cut(s) | 239 |
| BspMAI | CTGCAG | 2 cut(s) | 91, 217 |
| BspMI | ACCTGC | 1 cut(s) | 336 |
| BspOI | GCTAGC | 1 cut(s) | 138 |
| BspPI | GGATC | 1 cut(s) | 1101 |
| BspQI | GCTCTTC | 1 cut(s) | 970 |
| BspT104I | TTCGAA | 1 cut(s) | 451 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BspTI | CTTAAG | 1 cut(s) | 1109 |
| BsrGI | TGTACA | 1 cut(s) | 728 |
| BsrI | ACTGG | 3 cut(s) | 161, 739, 1207 |
| BssECI | CCNNGG | 4 cut(s) | 340, 442, 918, 1025 |
| BssMI | GATC | 2 cut(s) | 1093, 1191 |
| BssT1I | CCWWGG | 3 cut(s) | 442, 918, 1025 |
| Bst2UI | CCWGG | 2 cut(s) | 342, 1323 |
| Bst4CI | ACNGT | 2 cut(s) | 479, 586 |
| Bst6I | CTCTTC | 1 cut(s) | 970 |
| BstAFI | CTTAAG | 1 cut(s) | 1109 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 502, 1166 |
| BstAUI | TGTACA | 1 cut(s) | 728 |
| BstBAI | YACGTR | 1 cut(s) | 893 |
| BstBI | TTCGAA | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 4 cut(s) | 136, 278, 427, 1233 |
| BstDEI | CTNAG | 4 cut(s) | 615, 694, 837, 1104 |
| BstDSI | CCRYGG | 1 cut(s) | 1025 |
| BstF5I | GGATG | 2 cut(s) | 746, 1051 |
| BstFNI | CGCG | 2 cut(s) | 280, 831 |
| BstKTI | GATC | 2 cut(s) | 1096, 1194 |
| BstMAI | GTCTC | 3 cut(s) | 162, 212, 838 |
| BstMBI | GATC | 2 cut(s) | 1093, 1191 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 502, 556, 1166 |
| BstNI | CCWGG | 2 cut(s) | 342, 1323 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 920 |
| BstSCI | CCNGG | 3 cut(s) | 340, 948, 1321 |
| BstSFI | CTRYAG | 2 cut(s) | 87, 213 |
| BstSLI | GKGCMC | 1 cut(s) | 672 |
| BstUI | CGCG | 2 cut(s) | 280, 831 |
| BstV1I | GCAGC | 5 cut(s) | 7, 101, 199, 1071, 1169 |
| BstV2I | GAAGAC | 1 cut(s) | 297 |
| BsuI | GTATCC | 1 cut(s) | 1093 |
| BsuRI | GGCC | 1 cut(s) | 429 |
| BtgI | CCRYGG | 1 cut(s) | 1025 |
| BtsCI | GGATG | 2 cut(s) | 746, 1051 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| BveI | ACCTGC | 1 cut(s) | 336 |
| Cac8I | GCNNGC | 4 cut(s) | 136, 278, 427, 1233 |
| CaiI | CAGNNNCTG | 1 cut(s) | 679 |
| Cfr13I | GGNCC | 2 cut(s) | 427, 565 |
| CseI | GACGC | 1 cut(s) | 820 |
| Csp6I | GTAC | 3 cut(s) | 11, 238, 729 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1207, 1242 |
| CviAII | CATG | 8 cut(s) | 242, 318, 611, 630, 647, 761, 1026, 1166 |
| CviQI | GTAC | 3 cut(s) | 11, 238, 729 |
| DdeI | CTNAG | 4 cut(s) | 615, 694, 837, 1104 |
| DpnI | GATC | 2 cut(s) | 1095, 1193 |
| DpnII | GATC | 2 cut(s) | 1093, 1191 |
| Eam1104I | CTCTTC | 1 cut(s) | 970 |
| EarI | CTCTTC | 1 cut(s) | 970 |
| Eco130I | CCWWGG | 3 cut(s) | 442, 918, 1025 |
| Eco47I | GGWCC | 1 cut(s) | 565 |
| Eco72I | CACGTG | 1 cut(s) | 893 |
| EcoRI | GAATTC | 1 cut(s) | 842 |
| EcoRII | CCWGG | 2 cut(s) | 340, 1321 |
| EcoT14I | CCWWGG | 3 cut(s) | 442, 918, 1025 |
| ErhI | CCWWGG | 3 cut(s) | 442, 918, 1025 |
| Esp3I | CGTCTC | 1 cut(s) | 838 |
| FaeI | CATG | 8 cut(s) | 245, 321, 614, 633, 650, 764, 1029, 1169 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1280, 1312 |
| FaqI | GGGAC | 2 cut(s) | 168, 411 |
| FatI | CATG | 8 cut(s) | 241, 317, 610, 629, 646, 760, 1025, 1165 |
| FauI | CCCGC | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 5 cut(s) | 21, 90, 213, 1085, 1158 |
| FokI | GGATG | 2 cut(s) | 733, 1058 |
| Fsp4HI | GCNGC | 5 cut(s) | 21, 90, 213, 1085, 1158 |
| FspBI | CTAG | 7 cut(s) | 135, 266, 353, 437, 443, 804, 1143 |
| GluI | GCNGC | 5 cut(s) | 21, 90, 213, 1085, 1158 |
| GsaI | CCCAGC | 1 cut(s) | 1178 |
| GsuI | CTGGAG | 1 cut(s) | 144 |
| HaeIII | GGCC | 1 cut(s) | 429 |
| HapII | CCGG | 1 cut(s) | 949 |
| HgaI | GACGC | 1 cut(s) | 820 |
| Hin1II | CATG | 8 cut(s) | 245, 321, 614, 633, 650, 764, 1029, 1169 |
| HincII | GTYRAC | 2 cut(s) | 475, 580 |
| HindII | GTYRAC | 2 cut(s) | 475, 580 |
| HindIII | AAGCTT | 1 cut(s) | 1106 |
| HinfI | GANTC | 6 cut(s) | 282, 308, 698, 865, 1121, 1250 |
| HpaII | CCGG | 1 cut(s) | 949 |
| HphI | GGTGA | 1 cut(s) | 693 |
| Hpy166II | GTNNAC | 3 cut(s) | 475, 580, 670 |
| Hpy188I | TCNGA | 6 cut(s) | 207, 681, 697, 838, 880, 946 |
| Hpy188III | TCNNGA | 4 cut(s) | 305, 908, 1043, 1097 |
| Hpy8I | GTNNAC | 3 cut(s) | 475, 580, 670 |
| Hpy99I | CGWCG | 1 cut(s) | 492 |
| HpyAV | CCTTC | 8 cut(s) | 35, 118, 486, 951, 978, 992, 1089, 1284 |
| HpyCH4III | ACNGT | 2 cut(s) | 479, 586 |
| HpyCH4IV | ACGT | 2 cut(s) | 301, 892 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 502, 556, 1166 |
| HpyF3I | CTNAG | 4 cut(s) | 615, 694, 837, 1104 |
| HpySE526I | ACGT | 2 cut(s) | 301, 892 |
| Hsp92II | CATG | 8 cut(s) | 245, 321, 614, 633, 650, 764, 1029, 1169 |
| KpnI | GGTACC | 1 cut(s) | 241 |
| Kzo9I | GATC | 2 cut(s) | 1093, 1191 |
| LguI | GCTCTTC | 1 cut(s) | 970 |
| Lsp1109I | GCAGC | 5 cut(s) | 7, 101, 199, 1071, 1169 |
| LweI | GCATC | 2 cut(s) | 40, 1155 |
| MaeI | CTAG | 7 cut(s) | 135, 266, 353, 437, 443, 804, 1143 |
| MaeII | ACGT | 2 cut(s) | 301, 892 |
| MaeIII | GTNAC | 5 cut(s) | 699, 742, 871, 913, 1014 |
| MalI | GATC | 2 cut(s) | 1095, 1193 |
| MboI | GATC | 2 cut(s) | 1093, 1191 |
| MboII | GAAGA | 3 cut(s) | 302, 987, 1312 |
| MfeI | CAATTG | 2 cut(s) | 1088, 1254 |
| MhlI | GDGCHC | 1 cut(s) | 672 |
| MluCI | AATT | 8 cut(s) | 468, 650, 842, 1049, 1073, 1088, 1241, 1254 |
| MlyI | GAGTC | 3 cut(s) | 707, 1115, 1259 |
| MmeI | TCCRAC | 1 cut(s) | 250 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1074 |
| MseI | TTAA | 3 cut(s) | 621, 1052, 1110 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| MspCI | CTTAAG | 1 cut(s) | 1109 |
| MspI | CCGG | 1 cut(s) | 949 |
| MspR9I | CCNGG | 3 cut(s) | 342, 950, 1323 |
| MunI | CAATTG | 2 cut(s) | 1088, 1254 |
| MvaI | CCWGG | 2 cut(s) | 342, 1323 |
| MvnI | CGCG | 2 cut(s) | 280, 831 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 502, 556, 1166 |
| NciI | CCSGG | 1 cut(s) | 950 |
| NcoI | CCATGG | 1 cut(s) | 1025 |
| NdeII | GATC | 2 cut(s) | 1093, 1191 |
| NheI | GCTAGC | 1 cut(s) | 134 |
| NlaIII | CATG | 8 cut(s) | 245, 321, 614, 633, 650, 764, 1029, 1169 |
| NlaIV | GGNNCC | 1 cut(s) | 239 |
| NmeAIII | GCCGAG | 1 cut(s) | 563 |
| NmuCI | GTSAC | 2 cut(s) | 699, 913 |
| NspV | TTCGAA | 1 cut(s) | 451 |
| PciSI | GCTCTTC | 1 cut(s) | 970 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1074 |
| PfeI | GAWTC | 3 cut(s) | 282, 308, 865 |
| PkrI | GCNGC | 5 cut(s) | 22, 91, 214, 1086, 1159 |
| PleI | GAGTC | 3 cut(s) | 706, 1115, 1258 |
| PmaCI | CACGTG | 1 cut(s) | 893 |
| PmlI | CACGTG | 1 cut(s) | 893 |
| PpsI | GAGTC | 3 cut(s) | 706, 1115, 1258 |
| Ppu21I | YACGTR | 1 cut(s) | 893 |
| PshAI | GACNNNNGTC | 1 cut(s) | 920 |
| PsiI | TTATAA | 2 cut(s) | 711, 1185 |
| Psp6I | CCWGG | 2 cut(s) | 340, 1321 |
| PspCI | CACGTG | 1 cut(s) | 893 |
| PspFI | CCCAGC | 1 cut(s) | 1174 |
| PspGI | CCWGG | 2 cut(s) | 340, 1321 |
| PspN4I | GGNNCC | 1 cut(s) | 239 |
| PspPI | GGNCC | 2 cut(s) | 427, 565 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 945, 977 |
| PstI | CTGCAG | 2 cut(s) | 91, 217 |
| PstNI | CAGNNNCTG | 1 cut(s) | 679 |
| RsaI | GTAC | 3 cut(s) | 12, 239, 730 |
| RsaNI | GTAC | 3 cut(s) | 11, 238, 729 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SapI | GCTCTTC | 1 cut(s) | 970 |
| SaqAI | TTAA | 3 cut(s) | 621, 1052, 1110 |
| SatI | GCNGC | 5 cut(s) | 21, 90, 213, 1085, 1158 |
| Sau3AI | GATC | 2 cut(s) | 1093, 1191 |
| Sau96I | GGNCC | 2 cut(s) | 427, 565 |
| SchI | GAGTC | 3 cut(s) | 707, 1115, 1259 |
| ScrFI | CCNGG | 3 cut(s) | 342, 950, 1323 |
| SduI | GDGCHC | 1 cut(s) | 672 |
| SfaNI | GCATC | 2 cut(s) | 40, 1155 |
| SfcI | CTRYAG | 2 cut(s) | 87, 213 |
| SfuI | TTCGAA | 1 cut(s) | 451 |
| SinI | GGWCC | 1 cut(s) | 565 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| SmlI | CTYRAG | 1 cut(s) | 1109 |
| SmoI | CTYRAG | 1 cut(s) | 1109 |
| SpeI | ACTAGT | 1 cut(s) | 265 |
| Sse9I | AATT | 8 cut(s) | 468, 650, 842, 1049, 1073, 1088, 1241, 1254 |
| SsiI | CCGC | 3 cut(s) | 235, 388, 425 |
| SspMI | CTAG | 7 cut(s) | 135, 266, 353, 437, 443, 804, 1143 |
| StyD4I | CCNGG | 3 cut(s) | 340, 948, 1321 |
| StyI | CCWWGG | 3 cut(s) | 442, 918, 1025 |
| TaaI | ACNGT | 2 cut(s) | 479, 586 |
| TaiI | ACGT | 2 cut(s) | 304, 895 |
| TaqI | TCGA | 6 cut(s) | 417, 451, 490, 823, 1124, 1190 |
| TasI | AATT | 8 cut(s) | 468, 650, 842, 1049, 1073, 1088, 1241, 1254 |
| TatI | WGTACW | 1 cut(s) | 728 |
| TfiI | GAWTC | 3 cut(s) | 282, 308, 865 |
| Tru1I | TTAA | 3 cut(s) | 621, 1052, 1110 |
| Tru9I | TTAA | 3 cut(s) | 621, 1052, 1110 |
| TscAI | CASTG | 1 cut(s) | 591 |
| TseFI | GTSAC | 2 cut(s) | 699, 913 |
| TseI | GCWGC | 5 cut(s) | 20, 89, 212, 1084, 1157 |
| Tsp45I | GTSAC | 2 cut(s) | 699, 913 |
| TspDTI | ATGAA | 7 cut(s) | 435, 663, 791, 797, 914, 1062, 1154 |
| TspGWI | ACGGA | 1 cut(s) | 758 |
| TspRI | CASTG | 1 cut(s) | 591 |
| Vha464I | CTTAAG | 1 cut(s) | 1109 |
| VneI | GTGCAC | 1 cut(s) | 668 |
| VpaK11BI | GGWCC | 1 cut(s) | 565 |
| XapI | RAATTY | 3 cut(s) | 842, 1073, 1241 |
| XmaJI | CCTAGG | 1 cut(s) | 442 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1074 |
| XspI | CTAG | 7 cut(s) | 135, 266, 353, 437, 443, 804, 1143 |