Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012029

Physical Location & Seq

Genomic Coordinates Forward (+)

14910029 .. 14914317

Gene Structure 4289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG171900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGGGCGGCGGACCCCGGACCTTCCCCGGCGGCGTCAGCAAGTGGAAATGGAAGCGCACGCACGAGAAACGAGCCAAGGACAAAGAGAAACGCCTCTTGGACCAAGAAAAGCAGCTCTACGAGGCCCGCCTCCGCTCCCAAATCCGGGGCAGCCTCGTCGGAAAACCCTACCCGCTTTCCGACCCGGGTCCGGAAACCAACCACAGCCCCATGGACCCCGACCGGCACATCAAATCCCTAGCCGATCGGTTCATGAAGGAAGGCGCCGAGGATTTGTGGAACGAAAAGGACGGCCCGGTTCACGAGCCGCCCCTGCAGCCGCCGGTCGGGTCGGACCGGCAGTCCAGATCGATTCCGGCTGACCTGAGGAAGCTGATACCGAAAGGTCGAAATTTGGCGGGAAATGATAGAAATTTGAGTAGTTTGGGGTGTAGTTATGTTAGCAGTAGAAGCTATTCGGTGCAGAGTAGAGGGAGGTTTAGGAGGAACGATGATTCGAGTGACGATTCGGATTTCGATTCCGATAATGAGGCCATGCAGCCGTTTTGGGAGGGTAGAAATGGGAATGAGAAACCGAAATTGGAGAGAAATGTGAGGAATTTGGGGAGTAGTGCTTCTCTGGGGAAGTATGATCGGAAGGTGATTAAGAGGAGAGTGCCTCTTAATGCATTGGAAGATGAGTGTGATTTTGCGCAGCAGGTGGAATCGATTAGGTATGAGCTGAGTAAGAAAAAGGAGGTTGAAATTGAAAGAGGGGACAGTGAAGAGGAGGGGTCGATTCTTAGTGAGAAGAGATTTGATGAGTGTGGGATATCTCCATTTACAGTCAAGGCATTGTCTTCTGCTGGGTATGTTCGAATGACTAGAGTTCAGGAGGCTGCAATTTCGGATTGCCTTGAGGGAAAGGATGTTTTGGTCAAAGCTAAAACCGGCACTGGCAAAACTGCTGCCTTTTTGCTTCCGGCTATTGAAGCAGTTGTGAAGGGTATGGCTGGCAATACCAATCAACGGGTGTCTCCAATTTTTGTTCTTATCCTCTGCCCCACAAGAGAACTTGCAAGTCAAATAGCTGCAGAAACAAATGTTTTGTTGAAGTACCATGAAGGCATAGGCATGCAAACATTAGTTGGAGGCACAAGATTTAAAGAGGACCAGAAACGTCTAGAATCAAATCCATGCCAGATAATAGTTGCAACTCCTGGCAGGTTGCTGGACCACATTGAGAATAGGTCTGGCTTGTCAGTGCGATTGATGGGACTGAAAATGTTAATACTTGATGAAGCTGGCCACTTACTAGACCTAGGATTTCGGAAGGACATAGAGAAAATCGTTGATTGTTTGCCTCGTAAGAGACAGTCCTTGCTCTTTACTGCAACACTCCCAAAAGAGGTTCGCCGCATATCACAGCTTGTTTTGAAAAAAGATCATGCTTTCATTGATACAGTGGGATTGGGCTGTGTGGAAACTCACGCTAAGGTTAAGCAGTCATATCTTGTTGCACCACATGACTTGCATTTTCAAATAGTTCACCATCTTTTGAAGGAGCATATCTGGCAATCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATCCTGATGTTACATTGGTCATTCAGGTGGGTATTCCTTCTGACCGGGAACAATATATACACCGTCTTGGAAGAACAGGACGGGAAGGTAAAGAAGGAGAAGGCATATTGTTGCTTGCACCATGGGAAGAGTATTTTCTGGAGGAATTAAAAGATTTGCCCCTTGAAAAATTTCCTTCACTGCGATTGGATCCGGGCACTAAACTCAAGATTGAGGATTCAATGACCAAGGTTGACAGTAGTGTCAAGGAAGCCGCCTATCATGCTTGGCTTGGCTACTACAACTCGATCAGGGAAACTGGTAGGGATAAAACTACACTTGTTGAGCAAGCCAACCTCTTTTGTCAGTCAATTGGTTTGCAAACTCCTCCTTCTCTCTTTAGAAAGACAGCATTGAAGATGGGTTTGAAAGATATACCTGGCATAAAAATACGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

733

Amino Acids

82.88

Weight (kDa)

9.13

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	287 - 461	2.5e-08	Type III restriction enzyme, res subunit
DEAD	PF00270	288 - 466	2e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	512 - 617	1.8e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63250 AT2G07750 AT5G08620
fragaria_vesca	FvH4_5g01920
malus_domestica	MD06G1077400.v1.1
prunus_persica	Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1 Prupe.5G095400_v2.0.a1
pyrus_communis	pycom06g07520
rosa_chinensis	RchiOBHm_Chr7g0198601
rosa_laevigata	RLG00000003858
rosa_multiflora	Rmu_sc0004229.1_g000005
rosa_roxburghii	Rroxscaffold_3G00257630
rosa_rugosa	Rorug07G0048400
rosa_samantha	Rh7AG171900 Rh7BG175300 Rh7CG181400 Rh7DG174400
rosa_wichuraiana	Rw7G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1569
AarI	CACCTGC	1 cut(s)	688
AasI	GACNNNNNNGTC	1 cut(s)	2003
Acc16I	TGCGCA	1 cut(s)	693
Acc36I	ACCTGC	2 cut(s)	688, 1194
AccB1I	GGYRCC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	190
AclWI	GGATC	2 cut(s)	1946, 1959
AcoI	YGGCCR	1 cut(s)	1285
AcsI	RAATTY	5 cut(s)	391, 412, 598, 1700, 1931
AcvI	CACGTG	1 cut(s)	1751
AcyI	GRCGYC	2 cut(s)	33, 264
AfaI	GTAC	2 cut(s)	1097, 1588
AfiI	CCNNNNNNNGG	6 cut(s)	144, 145, 190, 326, 1008, 1387
AhdI	GACNNNNNGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	1198, 2179
AjuI	GAANNNNNNNTTGG	4 cut(s)	80, 112, 563, 595
AluBI	AGCT	8 cut(s)	115, 373, 453, 721, 923, 1070, 1283, 1408
AluI	AGCT	8 cut(s)	115, 373, 453, 721, 923, 1070, 1283, 1408
Alw26I	GTCTC	2 cut(s)	1020, 1345
AlwI	GGATC	2 cut(s)	1946, 1959
Ama87I	CYCGRG	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	4 cut(s)	123, 292, 531, 1285
ApeKI	GCWGC	8 cut(s)	112, 150, 316, 538, 694, 878, 947, 1070
ApoI	RAATTY	5 cut(s)	391, 412, 598, 1700, 1931
Asp700I	GAANNNNTTC	2 cut(s)	454, 1932
AspA2I	CCTAGG	1 cut(s)	1300
AspLEI	GCGC	3 cut(s)	57, 266, 694
AsuC2I	CCSGG	8 cut(s)	16, 27, 146, 185, 186, 296, 1808, 1956
AsuHPI	GGTGA	3 cut(s)	652, 1520, 1551
AsuII	TTCGAA	1 cut(s)	856
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	8 cut(s)	11, 18, 100, 188, 214, 334, 1150, 1213
AvrII	CCTAGG	1 cut(s)	1300
AxyI	CCTNAGG	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	1961
BalI	TGGCCA	1 cut(s)	1287
BamHI	GGATCC	1 cut(s)	1951
BanI	GGYRCC	1 cut(s)	263
BauI	CACGAG	2 cut(s)	62, 302
BbrPI	CACGTG	1 cut(s)	1751
BbsI	GAAGAC	1 cut(s)	831
BbvI	GCAGC	8 cut(s)	124, 162, 328, 550, 706, 865, 934, 1057
BccI	CCATC	3 cut(s)	1246, 1539, 2155
BceAI	ACGGC	2 cut(s)	307, 526
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	2 cut(s)	1200, 2181
BcnI	CCSGG	8 cut(s)	16, 27, 146, 185, 186, 296, 1808, 1956
BcoDI	GTCTC	2 cut(s)	1020, 1345
BfaI	CTAG	6 cut(s)	239, 864, 1163, 1295, 1301, 1662
BfmI	CTRYAG	2 cut(s)	314, 1071
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	2 cut(s)	688, 1194
BlnI	CCTAGG	1 cut(s)	1300
Bme18I	GGWCC	8 cut(s)	11, 18, 100, 188, 214, 334, 1150, 1213
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	184
BmiI	GGNNCC	5 cut(s)	13, 189, 216, 265, 1953
BoxI	GACNNNNGTC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	831
BplI	GAGNNNNNCTC	2 cut(s)	643, 675
BpmI	CTGGAG	1 cut(s)	1922
Bpu10I	CCTNAGC	1 cut(s)	1473
Bpu14I	TTCGAA	1 cut(s)	856
BpuEI	CTTGAG	2 cut(s)	917, 1952
BpuMI	CCSGG	8 cut(s)	16, 27, 146, 185, 186, 296, 1808, 1956
Bsa29I	ATCGAT	2 cut(s)	350, 707
BsaAI	YACGTR	1 cut(s)	1751
BsaHI	GRCGYC	2 cut(s)	33, 264
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	6 cut(s)	144, 145, 190, 326, 1008, 1387
Bse118I	RCCGGY	4 cut(s)	222, 322, 336, 929
Bse1I	ACTGG	3 cut(s)	940, 1597, 2065
Bse21I	CCTNAGG	1 cut(s)	365
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	1200, 2181
BseCI	ATCGAT	2 cut(s)	350, 707
BseGI	GGATG	2 cut(s)	913, 1604
BseLI	CCNNNNNNNGG	6 cut(s)	144, 145, 190, 326, 1008, 1387
BseMII	CTCAG	3 cut(s)	356, 713, 1686
BseNI	ACTGG	3 cut(s)	940, 1597, 2065
BseRI	GAGGAG	4 cut(s)	664, 782, 1601, 2118
BseSI	GKGCMC	1 cut(s)	1961
BseXI	GCAGC	8 cut(s)	124, 162, 328, 550, 706, 865, 934, 1057
BseYI	CCCAGC	1 cut(s)	845
BsgI	GTGCAG	1 cut(s)	482
Bsh1285I	CGRYCG	3 cut(s)	223, 247, 327
BshFI	GGCC	4 cut(s)	125, 294, 533, 1287
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	2 cut(s)	350, 707
BsiEI	CGRYCG	3 cut(s)	223, 247, 327
BsiHKCI	CYCGRG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	770, 1269
BslI	CCNNNNNNNGG	6 cut(s)	144, 145, 190, 326, 1008, 1387
BsmAI	GTCTC	2 cut(s)	1020, 1345
BsmFI	GGGAC	2 cut(s)	770, 1269
BsnI	GGCC	4 cut(s)	125, 294, 533, 1287
BsoBI	CYCGRG	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	856
Bsp1286I	GDGCHC	1 cut(s)	1961
Bsp13I	TCCGGA	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	1586
Bsp143I	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
Bsp19I	CCATGG	2 cut(s)	210, 1883
BspANI	GGCC	4 cut(s)	125, 294, 533, 1287
BspCNI	CTCAG	3 cut(s)	357, 714, 1687
BspDI	ATCGAT	2 cut(s)	350, 707
BspEI	TCCGGA	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	5 cut(s)	13, 189, 216, 265, 1953
BspMAI	CTGCAG	2 cut(s)	318, 1075
BspMI	ACCTGC	2 cut(s)	688, 1194
BspPI	GGATC	2 cut(s)	1946, 1959
BspT104I	TTCGAA	1 cut(s)	856
BspT107I	GGYRCC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	135
BsrFI	RCCGGY	4 cut(s)	222, 322, 336, 929
BsrGI	TGTACA	1 cut(s)	1586
BsrI	ACTGG	3 cut(s)	940, 1597, 2065
BssAI	RCCGGY	4 cut(s)	222, 322, 336, 929
BssMI	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
BssNI	GRCGYC	2 cut(s)	33, 264
BssSI	CACGAG	2 cut(s)	62, 302
BssT1I	CCWWGG	5 cut(s)	75, 210, 1300, 1883, 1989
Bst2BI	CACGAG	2 cut(s)	62, 302
Bst2UI	CCWGG	2 cut(s)	1200, 2181
Bst4CI	ACNGT	7 cut(s)	761, 826, 1356, 1444, 1677, 1826, 2000
Bst6I	CTCTTC	3 cut(s)	759, 785, 1884
BstACI	GRCGYC	2 cut(s)	33, 264
BstAUI	TGTACA	1 cut(s)	1586
BstBAI	YACGTR	1 cut(s)	1751
BstBI	TTCGAA	1 cut(s)	856
BstC8I	GCNNGC	7 cut(s)	59, 127, 994, 1115, 1285, 1878, 2091
BstDEI	CTNAG	5 cut(s)	365, 722, 782, 1473, 1695
BstDSI	CCRYGG	2 cut(s)	210, 1883
BstF5I	GGATG	2 cut(s)	913, 1604
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	57, 266, 694
BstKTI	GATC	6 cut(s)	247, 350, 634, 1426, 1954, 2052
BstMAI	GTCTC	2 cut(s)	1020, 1345
BstMBI	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
BstMCI	CGRYCG	3 cut(s)	223, 247, 327
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 313, 316, 450, 971, 1552, 2024
BstNI	CCWGG	2 cut(s)	1200, 2181
BstNSI	RCATGY	1 cut(s)	1117
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	314, 1071
BstSLI	GKGCMC	1 cut(s)	1961
BstV1I	GCAGC	8 cut(s)	124, 162, 328, 550, 706, 865, 934, 1057
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	1 cut(s)	1951
BstYI	RGATCY	1 cut(s)	1951
Bsu15I	ATCGAT	2 cut(s)	350, 707
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	4 cut(s)	125, 294, 533, 1287
BsuTUI	ATCGAT	2 cut(s)	350, 707
BtgI	CCRYGG	2 cut(s)	210, 1883
BtsCI	GGATG	2 cut(s)	913, 1604
BtsI	GCAGTG	1 cut(s)	1940
BtsIMutI	CAGTG	5 cut(s)	766, 933, 1248, 1449, 1940
BveI	ACCTGC	2 cut(s)	688, 1194
Cac8I	GCNNGC	7 cut(s)	59, 127, 994, 1115, 1285, 1878, 2091
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	3 cut(s)	57, 266, 694
Cfr10I	RCCGGY	4 cut(s)	222, 322, 336, 929
Cfr9I	CCCGGG	1 cut(s)	184
ClaI	ATCGAT	2 cut(s)	350, 707
CpoI	CGGWCCG	1 cut(s)	334
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	1096, 1587
CspCI	CAANNNNNGTGG	2 cut(s)	1491, 1526
CspI	CGGWCCG	1 cut(s)	334
CviQI	GTAC	2 cut(s)	1096, 1587
DdeI	CTNAG	5 cut(s)	365, 722, 782, 1473, 1695
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	6 cut(s)	246, 349, 633, 1425, 1953, 2051
DpnII	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
DraI	TTTAAA	1 cut(s)	1144
DrdI	GACNNNNNNGTC	1 cut(s)	2003
DriI	GACNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	2003
EaeI	YGGCCR	1 cut(s)	1285
Eam1104I	CTCTTC	3 cut(s)	759, 785, 1884
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	3 cut(s)	759, 785, 1884
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	5 cut(s)	75, 210, 1300, 1883, 1989
Eco32I	GATATC	1 cut(s)	813
Eco47I	GGWCC	8 cut(s)	11, 18, 100, 188, 214, 334, 1150, 1213
Eco72I	CACGTG	1 cut(s)	1751
Eco81I	CCTNAGG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	1700
EcoRII	CCWGG	2 cut(s)	1198, 2179
EcoRV	GATATC	1 cut(s)	813
EcoT14I	CCWWGG	5 cut(s)	75, 210, 1300, 1883, 1989
EcoT22I	ATGCAT	1 cut(s)	670
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	5 cut(s)	75, 210, 1300, 1883, 1989
FaqI	GGGAC	2 cut(s)	770, 1269
FauI	CCCGC	3 cut(s)	134, 180, 391
FokI	GGATG	2 cut(s)	920, 1591
FspBI	CTAG	6 cut(s)	239, 864, 1163, 1295, 1301, 1662
FspI	TGCGCA	1 cut(s)	693
GlaI	GCGC	3 cut(s)	56, 265, 693
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	1922
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	125, 294, 533, 1287
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	3 cut(s)	57, 266, 694
Hin1I	GRCGYC	2 cut(s)	33, 264
Hin6I	GCGC	3 cut(s)	55, 264, 692
HinP1I	GCGC	3 cut(s)	55, 264, 692
HincII	GTYRAC	1 cut(s)	1996
HindII	GTYRAC	1 cut(s)	1996
HphI	GGTGA	3 cut(s)	652, 1520, 1551
Hpy166II	GTNNAC	3 cut(s)	301, 1528, 1996
Hpy8I	GTNNAC	3 cut(s)	301, 1528, 1996
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	7 cut(s)	761, 826, 1356, 1444, 1677, 1826, 2000
HpyCH4IV	ACGT	2 cut(s)	1159, 1750
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 313, 316, 450, 971, 1552, 2024
HpyF3I	CTNAG	5 cut(s)	365, 722, 782, 1473, 1695
HpySE526I	ACGT	2 cut(s)	1159, 1750
Hsp92I	GRCGYC	2 cut(s)	33, 264
HspAI	GCGC	3 cut(s)	55, 264, 692
KasI	GGCGCC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
LmnI	GCTCC	2 cut(s)	140, 1543
Lsp1109I	GCAGC	8 cut(s)	124, 162, 328, 550, 706, 865, 934, 1057
MaeI	CTAG	6 cut(s)	239, 864, 1163, 1295, 1301, 1662
MaeII	ACGT	2 cut(s)	1159, 1750
MaeIII	GTNAC	4 cut(s)	500, 1600, 1729, 1771
MalI	GATC	6 cut(s)	246, 349, 633, 1425, 1953, 2051
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
MboII	GAAGA	8 cut(s)	686, 776, 802, 831, 1613, 1845, 1901, 2170
MfeI	CAATTG	2 cut(s)	1718, 2112
MflI	RGATCY	1 cut(s)	1951
MhlI	GDGCHC	1 cut(s)	1961
MlsI	TGGCCA	1 cut(s)	1287
MluNI	TGGCCA	1 cut(s)	1287
Mly113I	GGCGCC	1 cut(s)	264
MmeI	TCCRAC	4 cut(s)	139, 204, 312, 1108
Mox20I	TGGCCA	1 cut(s)	1287
Mph1103I	ATGCAT	1 cut(s)	670
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	2 cut(s)	454, 1932
MscI	TGGCCA	1 cut(s)	1287
MseI	TTAA	6 cut(s)	645, 663, 1143, 1268, 1479, 1910
MslI	CAYNNNNRTG	2 cut(s)	1112, 1787
Msp20I	TGGCCA	1 cut(s)	1287
MunI	CAATTG	2 cut(s)	1718, 2112
MvaI	CCWGG	2 cut(s)	1200, 2181
MwoI	GCNNNNNNNGC	7 cut(s)	36, 313, 316, 450, 971, 1552, 2024
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	8 cut(s)	16, 27, 146, 185, 186, 296, 1808, 1956
NcoI	CCATGG	2 cut(s)	210, 1883
NdeII	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
NlaIV	GGNNCC	5 cut(s)	13, 189, 216, 265, 1953
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	500
NsbI	TGCGCA	1 cut(s)	693
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	1117
NspV	TTCGAA	1 cut(s)	856
PaeI	GCATGC	1 cut(s)	1117
PagI	TCATGA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	688
PdmI	GAANNNNTTC	2 cut(s)	454, 1932
Ple19I	CGATCG	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	267
PmaCI	CACGTG	1 cut(s)	1751
PmlI	CACGTG	1 cut(s)	1751
Ppu21I	YACGTR	1 cut(s)	1751
PshAI	GACNNNNGTC	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	1569
Psp6I	CCWGG	2 cut(s)	1198, 2179
PspCI	CACGTG	1 cut(s)	1751
PspFI	CCCAGC	1 cut(s)	845
PspGI	CCWGG	2 cut(s)	1198, 2179
PspN4I	GGNNCC	5 cut(s)	13, 189, 216, 265, 1953
PsrI	GAACNNNNNNTAC	2 cut(s)	1803, 1835
PstI	CTGCAG	2 cut(s)	318, 1075
PsuI	RGATCY	1 cut(s)	1951
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	1097, 1588
RsaNI	GTAC	2 cut(s)	1096, 1587
RseI	CAYNNNNRTG	2 cut(s)	1112, 1787
Rsr2I	CGGWCCG	1 cut(s)	334
RsrII	CGGWCCG	1 cut(s)	334
SaqAI	TTAA	6 cut(s)	645, 663, 1143, 1268, 1479, 1910
Sau3AI	GATC	6 cut(s)	244, 347, 631, 1423, 1951, 2049
SduI	GDGCHC	1 cut(s)	1961
SfcI	CTRYAG	2 cut(s)	314, 1071
SfoI	GGCGCC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	856
SinI	GGWCC	8 cut(s)	11, 18, 100, 188, 214, 334, 1150, 1213
SmaI	CCCGGG	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	1112, 1787
SmlI	CTYRAG	2 cut(s)	896, 1967
SmoI	CTYRAG	2 cut(s)	896, 1967
SphI	GCATGC	1 cut(s)	1117
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	6 cut(s)	239, 864, 1163, 1295, 1301, 1662
StyI	CCWWGG	5 cut(s)	75, 210, 1300, 1883, 1989
TaaI	ACNGT	7 cut(s)	761, 826, 1356, 1444, 1677, 1826, 2000
TaiI	ACGT	2 cut(s)	1162, 1753
TaqI	TCGA	9 cut(s)	350, 388, 497, 516, 707, 776, 856, 1681, 2048
TatI	WGTACW	1 cut(s)	1586
TauI	GCSGC	6 cut(s)	9, 33, 310, 322, 1398, 2018
Tru1I	TTAA	6 cut(s)	645, 663, 1143, 1268, 1479, 1910
Tru9I	TTAA	6 cut(s)	645, 663, 1143, 1268, 1479, 1910
TscAI	CASTG	5 cut(s)	766, 940, 1248, 1449, 1947
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	8 cut(s)	112, 150, 316, 538, 694, 878, 947, 1070
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	8 cut(s)	241, 269, 1116, 1293, 1423, 1649, 1655, 1772
TspGWI	ACGGA	1 cut(s)	1616
TspMI	CCCGGG	1 cut(s)	184
TspRI	CASTG	5 cut(s)	766, 940, 1248, 1449, 1947
VpaK11BI	GGWCC	8 cut(s)	11, 18, 100, 188, 214, 334, 1150, 1213
XapI	RAATTY	5 cut(s)	391, 412, 598, 1700, 1931
XbaI	TCTAGA	2 cut(s)	1162, 1661
XceI	RCATGY	1 cut(s)	1117
XmaI	CCCGGG	1 cut(s)	184
XmaJI	CCTAGG	1 cut(s)	1300
XmnI	GAANNNNTTC	2 cut(s)	454, 1932
XspI	CTAG	6 cut(s)	239, 864, 1163, 1295, 1301, 1662
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.