Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Forward (+)

5511562 .. 5513838

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G13290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGACGATTCGATCGTTGCGTAAACCACCGCCGGTTAAACTTGTGTTTCCTACTCTGATTATACTCTTCTTGACATGTTTGTTATGTATCTTAACAAATTTCCAAACCATATCGTATCTTTTCCGTCCGCTTTGGGATAAACCGCCACCGCCTTTTAAACGGATACCGCATTACTATGCGGAGAATGTTTCCATGGGACATCTTTGTGAGCTTCACGGCTGGACACCGCGGTTAGAACCGAGGCGAGTGTTTGATGCCATCATTTTCAGTAATGAGCTTGATCTTCTTGAAGTCAGATGGCGGGAATTGGAGCCTTATGTGTCGAAGTTTGTGATATTGGAGTCAAACACTACGTTTACCGGGATCCCGAAGCCGCTTTTCTTCGATTCCAATAAGGAGAGATTTGCGTTTGCGGAGGGGAAGATTGTACATGGAGTGTTTCCTGGGAAGAAACGGTCTACGGGGCAGCCGTATGAGGATCCGTTTTTGCTTGAGGGGCAACAGCGAGTTGCGATGAACTGGTTGCTTAGAGAAGCTGGTGTATCGGATGGAGATGCGGTGATAATGTCAGATGCAGACGAGATTCCGAGTCCTCATACTGTGAAGTTTCTACAGTGGTGTGATGGGATACCAGATGTAATGCATTTGGAGATGAGGGAATACATGTACTCCTTTGAGTTTCCGGTTGATTACAGTAGCTGGAGAGCCTCTGTTCATATATATAGTAGGAAGTGGACTCAATACCGGCACTCACGACAAACGGACTTGATATTATCCGACGCAGGGTGGCATTGCAGCTTCTGTTTCAGACGACTCAACGAGTTTGTTTTCAAGATGAAAGGTTATAGTCATGCAGATAGAGTCAAACGCAAGGAGTTTTTGGATTATCAGAGGATACAAAAACATATTTGCAAAGGTTATGATCTCTTTGACATGCTTCCTGAAAAATACAGCTTCCAAGAGTTGATTAGCAAAATCGGACCCATCCCGCCTTCTGCGTCTGCGGTACATCTACCAGCCTTTTTGATTCAGAACGCTGCTCGCTTTCGGTTTCTCCTCCCGGGAGGTTGTCTCCGAGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

361

Amino Acids

42.31

Weight (kDa)

8.79

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	18 - 360	4.9e-177	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	458
AccII	CGCG	1 cut(s)	229
AclWI	GGATC	4 cut(s)	358, 371, 473, 486
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	3 cut(s)	429, 668, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	783
AflIII	ACRYGT	2 cut(s)	74, 663
AgsI	TTSAA	2 cut(s)	290, 832
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	6 cut(s)	211, 277, 536, 699, 798, 954
AluI	AGCT	6 cut(s)	211, 277, 536, 699, 798, 954
Alw26I	GTCTC	1 cut(s)	1076
AlwI	GGATC	4 cut(s)	358, 371, 473, 486
AlwNI	CAGNNNCTG	2 cut(s)	699, 801
Ama87I	CYCGRG	1 cut(s)	1060
ApeKI	GCWGC	3 cut(s)	466, 795, 1037
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	3 cut(s)	361, 1061, 1062
AsuHPI	GGTGA	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	1060
AvaII	GGWCC	1 cut(s)	980
BamHI	GGATCC	2 cut(s)	363, 478
BbvI	GCAGC	3 cut(s)	478, 807, 1024
BccI	CCATC	5 cut(s)	266, 291, 542, 617, 992
BceAI	ACGGC	2 cut(s)	232, 454
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	3 cut(s)	156, 621, 888
BcnI	CCSGG	3 cut(s)	361, 1061, 1062
BcoDI	GTCTC	1 cut(s)	1076
BfaI	CTAG	1 cut(s)	1084
BfmI	CTRYAG	1 cut(s)	611
BfuI	GTATCC	3 cut(s)	156, 621, 888
BisI	GCNGC	4 cut(s)	374, 467, 796, 1038
BlsI	GCNGC	4 cut(s)	375, 468, 797, 1039
Bme1390I	CCNGG	4 cut(s)	361, 444, 1061, 1062
Bme18I	GGWCC	1 cut(s)	980
BmeT110I	CYCGRG	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	4 cut(s)	312, 365, 480, 982
BmrFI	CCNGG	4 cut(s)	361, 444, 1061, 1062
BmsI	GCATC	3 cut(s)	244, 544, 562
BplI	GAGNNNNNCTC	1 cut(s)	1056
BpmI	CTGGAG	1 cut(s)	721
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	3 cut(s)	361, 1061, 1062
BsaJI	CCNNGG	5 cut(s)	192, 227, 239, 443, 1060
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	4 cut(s)	543, 573, 653, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	783
Bse118I	RCCGGY	2 cut(s)	31, 744
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	5 cut(s)	192, 227, 239, 443, 1060
BseGI	GGATG	2 cut(s)	553, 984
BseLI	CCNNNNNNNGG	1 cut(s)	783
BseMI	GCAATG	1 cut(s)	790
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	1046
BseXI	GCAGC	3 cut(s)	478, 807, 1024
Bsh1236I	CGCG	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	1060
BsiSI	CCGG	5 cut(s)	32, 360, 683, 745, 1061
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	783
BsmAI	GTCTC	1 cut(s)	1076
BsmFI	GGGAC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	1060
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	11, 280, 363, 478, 922
Bsp19I	CCATGG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	4 cut(s)	312, 365, 480, 982
BspPI	GGATC	4 cut(s)	358, 371, 473, 486
BsrDI	GCAATG	1 cut(s)	790
BsrFI	RCCGGY	2 cut(s)	31, 744
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	2 cut(s)	31, 744
BssECI	CCNNGG	5 cut(s)	192, 227, 239, 443, 1060
BssMI	GATC	5 cut(s)	11, 280, 363, 478, 922
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	4 cut(s)	456, 601, 615, 695
Bst6I	CTCTTC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	1042
BstDEI	CTNAG	1 cut(s)	527
BstDSI	CCRYGG	2 cut(s)	192, 227
BstF5I	GGATG	2 cut(s)	553, 984
BstFNI	CGCG	1 cut(s)	229
BstKTI	GATC	5 cut(s)	14, 283, 366, 481, 925
BstMAI	GTCTC	1 cut(s)	1076
BstMBI	GATC	5 cut(s)	11, 280, 363, 478, 922
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	3 cut(s)	78, 667, 937
BstSCI	CCNGG	4 cut(s)	359, 442, 1059, 1060
BstSFI	CTRYAG	1 cut(s)	611
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	3 cut(s)	478, 807, 1024
BstX2I	RGATCY	2 cut(s)	363, 478
BstYI	RGATCY	2 cut(s)	363, 478
BsuI	GTATCC	3 cut(s)	156, 621, 888
BtgI	CCRYGG	2 cut(s)	192, 227
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	553, 984
BtsIMutI	CAGTG	1 cut(s)	620
Cac8I	GCNNGC	1 cut(s)	1042
CaiI	CAGNNNCTG	2 cut(s)	699, 801
Cfr10I	RCCGGY	2 cut(s)	31, 744
Cfr13I	GGNCC	1 cut(s)	980
Cfr42I	CCGCGG	1 cut(s)	230
Cfr9I	CCCGGG	1 cut(s)	1060
CseI	GACGC	2 cut(s)	788, 987
Csp6I	GTAC	3 cut(s)	428, 667, 1007
CviAII	CATG	6 cut(s)	75, 193, 431, 664, 851, 934
CviQI	GTAC	3 cut(s)	428, 667, 1007
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	5 cut(s)	13, 282, 365, 480, 924
DpnII	GATC	5 cut(s)	11, 280, 363, 478, 922
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	980
Eco88I	CYCGRG	1 cut(s)	1060
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	6 cut(s)	78, 196, 434, 667, 854, 937
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	6 cut(s)	74, 192, 430, 663, 850, 933
FauI	CCCGC	2 cut(s)	294, 996
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	4 cut(s)	374, 467, 796, 1038
FokI	GGATG	2 cut(s)	560, 971
Fsp4HI	GCNGC	4 cut(s)	374, 467, 796, 1038
FspBI	CTAG	1 cut(s)	1084
GluI	GCNGC	4 cut(s)	374, 467, 796, 1038
GsuI	CTGGAG	1 cut(s)	721
HapII	CCGG	5 cut(s)	32, 360, 683, 745, 1061
HgaI	GACGC	2 cut(s)	788, 987
Hin1II	CATG	6 cut(s)	78, 196, 434, 667, 854, 937
HinfI	GANTC	9 cut(s)	7, 341, 386, 583, 589, 736, 813, 861, 1027
HpaII	CCGG	5 cut(s)	32, 360, 683, 745, 1061
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	4 cut(s)	23, 357, 459, 735
Hpy188III	TCNNGA	6 cut(s)	70, 287, 367, 753, 832, 941
Hpy8I	GTNNAC	4 cut(s)	23, 357, 459, 735
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	1 cut(s)	1002
HpyCH4III	ACNGT	4 cut(s)	456, 601, 615, 695
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	5 cut(s)	575, 643, 795, 854, 912
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	6 cut(s)	78, 196, 434, 667, 854, 937
KspI	CCGCGG	1 cut(s)	230
Kzo9I	GATC	5 cut(s)	11, 280, 363, 478, 922
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	3 cut(s)	478, 807, 1024
LweI	GCATC	3 cut(s)	244, 544, 562
MaeI	CTAG	1 cut(s)	1084
MaeII	ACGT	1 cut(s)	353
MalI	GATC	5 cut(s)	13, 282, 365, 480, 924
MboI	GATC	5 cut(s)	11, 280, 363, 478, 922
MboII	GAAGA	5 cut(s)	58, 275, 373, 433, 460
MflI	RGATCY	2 cut(s)	363, 478
MluCI	AATT	2 cut(s)	97, 305
MlyI	GAGTC	5 cut(s)	350, 598, 730, 807, 870
MmeI	TCCRAC	1 cut(s)	801
Mph1103I	ATGCAT	1 cut(s)	645
MseI	TTAA	3 cut(s)	36, 92, 156
MslI	CAYNNNNRTG	2 cut(s)	174, 204
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	5 cut(s)	32, 360, 683, 745, 1061
MspR9I	CCNGG	4 cut(s)	361, 444, 1061, 1062
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	496
NciI	CCSGG	3 cut(s)	361, 1061, 1062
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	5 cut(s)	11, 280, 363, 478, 922
NlaIII	CATG	6 cut(s)	78, 196, 434, 667, 854, 937
NlaIV	GGNNCC	4 cut(s)	312, 365, 480, 982
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	3 cut(s)	78, 667, 937
PciI	ACATGT	2 cut(s)	74, 663
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 16, 467
PfeI	GAWTC	4 cut(s)	7, 386, 583, 1027
PkrI	GCNGC	4 cut(s)	375, 468, 797, 1039
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	5 cut(s)	349, 597, 730, 807, 869
PpsI	GAGTC	5 cut(s)	349, 597, 730, 807, 869
PscI	ACATGT	2 cut(s)	74, 663
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	312, 365, 480, 982
PspPI	GGNCC	1 cut(s)	980
PstNI	CAGNNNCTG	2 cut(s)	699, 801
PsuI	RGATCY	2 cut(s)	363, 478
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	429, 668, 1008
RsaNI	GTAC	3 cut(s)	428, 667, 1007
RseI	CAYNNNNRTG	2 cut(s)	174, 204
SacII	CCGCGG	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	36, 92, 156
SatI	GCNGC	4 cut(s)	374, 467, 796, 1038
Sau3AI	GATC	5 cut(s)	11, 280, 363, 478, 922
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	5 cut(s)	350, 598, 730, 807, 870
ScrFI	CCNGG	4 cut(s)	361, 444, 1061, 1062
SfaNI	GCATC	3 cut(s)	244, 544, 562
SfcI	CTRYAG	1 cut(s)	611
Sfr303I	CCGCGG	1 cut(s)	230
SgrBI	CCGCGG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	980
SmaI	CCCGGG	1 cut(s)	1062
SmiMI	CAYNNNNRTG	2 cut(s)	174, 204
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	97, 305
SspMI	CTAG	1 cut(s)	1084
StyD4I	CCNGG	4 cut(s)	359, 442, 1059, 1060
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	4 cut(s)	456, 601, 615, 695
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	3 cut(s)	10, 323, 384
TasI	AATT	2 cut(s)	97, 305
TatI	WGTACW	2 cut(s)	427, 666
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	4 cut(s)	7, 386, 583, 1027
Tru1I	TTAA	3 cut(s)	36, 92, 156
Tru9I	TTAA	3 cut(s)	36, 92, 156
TscAI	CASTG	1 cut(s)	620
TseI	GCWGC	3 cut(s)	466, 795, 1037
TspDTI	ATGAA	3 cut(s)	530, 704, 851
TspGWI	ACGGA	4 cut(s)	113, 175, 471, 776
TspMI	CCCGGG	1 cut(s)	1060
TspRI	CASTG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	980
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	3 cut(s)	78, 667, 937
XmaI	CCCGGG	1 cut(s)	1060
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	1084
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.