Rroxscaffold_2G00153190

Beta-1,4-mannosyl-glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003347
Physical Location & Seq
Forward (+)
89958486 .. 89962226
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153190.1

Sequence Viewer

Length: 1323 bp
ATGGCACCACGATCTCTTCGTCATACTCCCAGACGGACTCCACGCAAGTTCTTTTATCTCTTACTGTTGATATTCGTGCCTGCATGTATATTTGGATTCTTTATAGATTACCGGAAAGTTACATATTTCCTCCGGCCACTTTGGGATACGCCTCCGGCTCCGTTCACATGGCTGCCACACTACTATGCAGAAAATGTAAGCATGGACCATCTCTGCCGCCTTCATGGCTGGTCCGTGCGTGCCACTCCACGCCGTATTTTTGATGCCATCATCTTCAGCAATGAAATAGACTTGCTTGATATCAGGTGGCATGAACTTTATCCATATGTCACAAAATTTGTAATCATCGAGGCAAATACTACTTTCACTGGAATCCCTAAACCTCTCTACTTTGCTTCAAATCGGAACAGATTTGCCTTTGCTGATGAAAAAATTGTGCACTATGTCTTTCCTGGCACAACTCGAAGCGGAGATTCACATGCAGACCCCTTCAAATTTGAGAGAATGCAACGTGCAGCTATGGATGATTTACTTCGGCAGGCAGGGATTTCCAATGGCGATGTCCTGATAATGGCGGATACTGATGAGATCCCTAGGCCGCAGACGTTGAAACTGTTGCAATGGTGTGATGGGATCCCTTCTAAACTGCATTTTGAGATGAAGCACTACCTGTACTCATTTGAGTTCCCAATGGACAGCATCTGGAAGACTGCATCTAATATCTACGGCCCGAATACCAGGTACATGCATTCGAGGCAAACTGATGACCTGCTCTCTGATGCGGGATGGCATTGTAGTTTTTGCTTTCGGCACATTGAGGAGTTTGTGTTCAAGATGGGAGCTTATAGCCACGCAGAGCGTGTGAGGCGGAGAGACTTTCTGGATTACAGAAGAATACAGAGGCTCATTTGTCATGGTGACGATCTTTTCGATATGTTACCCGAAGAGTTCACATTCAAGGACTTGATCAGGAAGATGGGATCGATTCCCAAATCAGCTTCTGCAATTACCCTTCCTGCTTATTTGATAAAGAATGCGGACAAGTTTAGGTACCTTCTCCCTGGAGGCTGTATCAGAGAGACTGGTAGCTCTTCTAATTTTCGTAAGGAAAATGAGAAGAAGCAAGGACGAAAGAGACCATTGTCTGTGAGAAAAAGCAATGACGAAAAGAGATCATTCCCATCCTTGCTGGCGGAGACCATTGTTTCCAAAAATGGACATGAAACATCTTCAAACTTCAACTTTTTAACCATAGTTCCAGATTCATCAATTGGAACTTGCACATTCGAATCAATCTCTCTCGCTTCTCTTCATTGTCTGTGA

Protein Analysis

440

Amino Acids

51.36

Weight (kDa)

9.13

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 16 - 360 1.6e-167 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 777
Acc65I GGTACC 1 cut(s) 1050
AccB1I GGYRCC 2 cut(s) 4, 1050
AciI CCGC 8 cut(s) 217, 468, 575, 599, 782, 868, 1037, 1193
AclWI GGATC 4 cut(s) 583, 628, 641, 988
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 2 cut(s) 335, 494
AcuI CTGAAG 1 cut(s) 259
AfaI GTAC 3 cut(s) 674, 743, 1052
AfiI CCNNNNNNNGG 1 cut(s) 571
AgsI TTSAA 7 cut(s) 399, 493, 610, 832, 958, 1233, 1240
AjnI CCWGG 3 cut(s) 451, 737, 1060
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 4 cut(s) 518, 842, 998, 1089
AluI AGCT 4 cut(s) 518, 842, 998, 1089
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 4 cut(s) 867, 1073, 1129, 1190
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 4 cut(s) 583, 628, 641, 988
AlwNI CAGNNNCTG 2 cut(s) 702, 1001
AoxI GGCC 3 cut(s) 134, 596, 727
ApaLI GTGCAC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 172, 515
ApoI RAATTY 2 cut(s) 335, 494
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
Asp718I GGTACC 1 cut(s) 1050
AspA2I CCTAGG 1 cut(s) 593
AspS9I GGNCC 3 cut(s) 205, 231, 728
AsuHPI GGTGA 1 cut(s) 929
AsuII TTCGAA 1 cut(s) 1287
AvaII GGWCC 2 cut(s) 205, 231
AvrII CCTAGG 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 633
BanI GGYRCC 2 cut(s) 4, 1050
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 159, 527
BccI CCATC 7 cut(s) 216, 275, 623, 780, 829, 970, 1189
BceAI ACGGC 2 cut(s) 237, 742
BciT130I CCWGG 3 cut(s) 453, 739, 1062
BciVI GTATCC 2 cut(s) 139, 571
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 4 cut(s) 867, 1073, 1129, 1190
BfaI CTAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 777
BfuI GTATCC 2 cut(s) 139, 571
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 4 cut(s) 173, 217, 516, 599
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 4 cut(s) 174, 218, 517, 600
Bme1390I CCNGG 3 cut(s) 453, 739, 1062
Bme18I GGWCC 2 cut(s) 205, 231
BmgT120I GGNCC 3 cut(s) 205, 231, 728
BmiI GGNNCC 4 cut(s) 6, 159, 635, 1052
BmrFI CCNGG 3 cut(s) 453, 739, 1062
BmsI GCATC 4 cut(s) 253, 708, 722, 769
BoxI GACNNNNGTC 1 cut(s) 1141
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 1083
Bpu14I TTCGAA 1 cut(s) 1287
Bsa29I ATCGAT 1 cut(s) 983
BsaI GGTCTC 2 cut(s) 1129, 1190
BsaJI CCNNGG 2 cut(s) 593, 1060
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 2 cut(s) 373, 1087
Bse3DI GCAATG 3 cut(s) 286, 626, 1165
BseBI CCWGG 3 cut(s) 453, 739, 1062
BseCI ATCGAT 1 cut(s) 983
BseDI CCNNGG 2 cut(s) 593, 1060
BseGI GGATG 3 cut(s) 529, 791, 1181
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 3 cut(s) 286, 626, 1165
BseNI ACTGG 2 cut(s) 373, 1087
BseRI GAGGAG 1 cut(s) 833
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 2 cut(s) 159, 527
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 3 cut(s) 136, 598, 729
BshNI GGYRCC 2 cut(s) 4, 1050
BshVI ATCGAT 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 3 cut(s) 112, 133, 155
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 4 cut(s) 867, 1073, 1129, 1190
BsmI GAATGC 3 cut(s) 510, 748, 1039
BsnI GGCC 3 cut(s) 136, 598, 729
Bso31I GGTCTC 2 cut(s) 1129, 1190
Bsp119I TTCGAA 1 cut(s) 1287
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
BspACI CCGC 8 cut(s) 217, 468, 575, 599, 782, 868, 1037, 1193
BspANI GGCC 3 cut(s) 136, 598, 729
BspDI ATCGAT 1 cut(s) 983
BspLI GGNNCC 4 cut(s) 6, 159, 635, 1052
BspMI ACCTGC 1 cut(s) 777
BspPI GGATC 4 cut(s) 583, 628, 641, 988
BspQI GCTCTTC 1 cut(s) 1096
BspT104I TTCGAA 1 cut(s) 1287
BspT107I GGYRCC 2 cut(s) 4, 1050
BspTNI GGTCTC 2 cut(s) 1129, 1190
BsrDI GCAATG 3 cut(s) 286, 626, 1165
BsrI ACTGG 2 cut(s) 373, 1087
BssECI CCNNGG 2 cut(s) 593, 1060
BssMI GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 3 cut(s) 453, 739, 1062
Bst4CI ACNGT 2 cut(s) 66, 615
Bst6I CTCTTC 4 cut(s) 21, 939, 1096, 1314
BstBI TTCGAA 1 cut(s) 1287
BstC8I GCNNGC 4 cut(s) 81, 240, 540, 1191
BstF5I GGATG 3 cut(s) 529, 791, 1181
BstKTI GATC 7 cut(s) 14, 591, 636, 925, 969, 983, 1175
BstMAI GTCTC 4 cut(s) 867, 1073, 1129, 1190
BstMBI GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
BstMWI GCNNNNNNNGC 3 cut(s) 225, 754, 865
BstNI CCWGG 3 cut(s) 453, 739, 1062
BstNSI RCATGY 3 cut(s) 87, 482, 748
BstPAI GACNNNNGTC 1 cut(s) 1141
BstSCI CCNGG 3 cut(s) 451, 737, 1060
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 159, 527
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 588, 633
BstYI RGATCY 2 cut(s) 588, 633
Bsu15I ATCGAT 1 cut(s) 983
BsuI GTATCC 2 cut(s) 139, 571
BsuRI GGCC 3 cut(s) 136, 598, 729
BsuTUI ATCGAT 1 cut(s) 983
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 3 cut(s) 529, 791, 1181
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 777
Cac8I GCNNGC 4 cut(s) 81, 240, 540, 1191
CaiI CAGNNNCTG 2 cut(s) 702, 1001
Cfr13I GGNCC 3 cut(s) 205, 231, 728
ClaI ATCGAT 1 cut(s) 983
CsiI ACCWGGT 1 cut(s) 737
Csp6I GTAC 3 cut(s) 673, 742, 1051
CviAII CATG 9 cut(s) 84, 168, 202, 224, 311, 479, 745, 914, 1220
CviQI GTAC 3 cut(s) 673, 742, 1051
DpnI GATC 7 cut(s) 13, 590, 635, 924, 968, 982, 1174
DpnII GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 4 cut(s) 21, 939, 1096, 1314
EarI CTCTTC 4 cut(s) 21, 939, 1096, 1314
EciI GGCGGA 3 cut(s) 590, 883, 1208
Eco130I CCWWGG 1 cut(s) 593
Eco31I GGTCTC 2 cut(s) 1129, 1190
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 205, 231
Eco57I CTGAAG 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 451, 737, 1060
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 9 cut(s) 87, 171, 205, 227, 314, 482, 748, 917, 1223
FatI CATG 9 cut(s) 83, 167, 201, 223, 310, 478, 744, 913, 1219
FauI CCCGC 1 cut(s) 775
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 966
Fnu4HI GCNGC 4 cut(s) 173, 217, 516, 599
FokI GGATG 3 cut(s) 536, 798, 1168
Fsp4HI GCNGC 4 cut(s) 173, 217, 516, 599
FspBI CTAG 1 cut(s) 594
GluI GCNGC 4 cut(s) 173, 217, 516, 599
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 3 cut(s) 136, 598, 729
HapII CCGG 3 cut(s) 112, 133, 155
Hin1II CATG 9 cut(s) 87, 171, 205, 227, 314, 482, 748, 917, 1223
HinfI GANTC 7 cut(s) 37, 96, 372, 473, 985, 1262, 1289
HpaII CCGG 3 cut(s) 112, 133, 155
HphI GGTGA 1 cut(s) 929
Hpy166II GTNNAC 3 cut(s) 165, 439, 951
Hpy188I TCNGA 3 cut(s) 405, 778, 1076
Hpy188III TCNNGA 6 cut(s) 565, 703, 832, 881, 970, 1259
Hpy8I GTNNAC 3 cut(s) 165, 439, 951
HpyAV CCTTC 5 cut(s) 230, 499, 648, 1022, 1064
HpyCH4III ACNGT 2 cut(s) 66, 615
HpyCH4IV ACGT 2 cut(s) 511, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 754, 865
HpySE526I ACGT 2 cut(s) 511, 605
Hsp92II CATG 9 cut(s) 87, 171, 205, 227, 314, 482, 748, 917, 1223
KpnI GGTACC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
LguI GCTCTTC 1 cut(s) 1096
LmnI GCTCC 2 cut(s) 163, 839
Lsp1109I GCAGC 2 cut(s) 159, 527
LweI GCATC 4 cut(s) 253, 708, 722, 769
MabI ACCWGGT 1 cut(s) 737
MaeI CTAG 1 cut(s) 594
MaeII ACGT 2 cut(s) 511, 605
MaeIII GTNAC 4 cut(s) 118, 328, 917, 936
MalI GATC 7 cut(s) 13, 590, 635, 924, 968, 982, 1174
MboI GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
MfeI CAATTG 1 cut(s) 1269
MflI RGATCY 2 cut(s) 588, 633
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 6 cut(s) 335, 432, 494, 1005, 1096, 1269
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 9 cut(s) 140, 162, 343, 393, 747, 811, 858, 894, 1058
Mph1103I ATGCAT 1 cut(s) 750
MseI TTAA 1 cut(s) 1247
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 3 cut(s) 112, 133, 155
MspR9I CCNGG 3 cut(s) 453, 739, 1062
MunI CAATTG 1 cut(s) 1269
Mva1269I GAATGC 3 cut(s) 510, 748, 1039
MvaI CCWGG 3 cut(s) 453, 739, 1062
MwoI GCNNNNNNNGC 3 cut(s) 225, 754, 865
NdeI CATATG 1 cut(s) 325
NdeII GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
NlaIII CATG 9 cut(s) 87, 171, 205, 227, 314, 482, 748, 917, 1223
NlaIV GGNNCC 4 cut(s) 6, 159, 635, 1052
NmuCI GTSAC 2 cut(s) 328, 917
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 3 cut(s) 87, 482, 748
NspV TTCGAA 1 cut(s) 1287
PciSI GCTCTTC 1 cut(s) 1096
PcsI WCGNNNNNNNCGW 2 cut(s) 16, 927
PctI GAATGC 3 cut(s) 510, 748, 1039
PfeI GAWTC 6 cut(s) 96, 372, 473, 985, 1262, 1289
PkrI GCNGC 4 cut(s) 174, 218, 517, 600
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 1141
Psp6I CCWGG 3 cut(s) 451, 737, 1060
PspGI CCWGG 3 cut(s) 451, 737, 1060
PspN4I GGNNCC 4 cut(s) 6, 159, 635, 1052
PspPI GGNCC 3 cut(s) 205, 231, 728
PstNI CAGNNNCTG 2 cut(s) 702, 1001
PsuI RGATCY 2 cut(s) 588, 633
RsaI GTAC 3 cut(s) 674, 743, 1052
RsaNI GTAC 3 cut(s) 673, 742, 1051
RseI CAYNNNNRTG 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 1096
SaqAI TTAA 1 cut(s) 1247
SatI GCNGC 4 cut(s) 173, 217, 516, 599
Sau3AI GATC 7 cut(s) 11, 588, 633, 922, 966, 980, 1172
Sau96I GGNCC 3 cut(s) 205, 231, 728
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 3 cut(s) 453, 739, 1062
SduI GDGCHC 1 cut(s) 441
SexAI ACCWGGT 1 cut(s) 737
SfaNI GCATC 4 cut(s) 253, 708, 722, 769
SfuI TTCGAA 1 cut(s) 1287
SinI GGWCC 2 cut(s) 205, 231
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 6 cut(s) 335, 432, 494, 1005, 1096, 1269
SsiI CCGC 8 cut(s) 217, 468, 575, 599, 782, 868, 1037, 1193
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 3 cut(s) 451, 737, 1060
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 2 cut(s) 66, 615
TaiI ACGT 2 cut(s) 514, 608
TaqI TCGA 6 cut(s) 348, 463, 752, 930, 983, 1287
TasI AATT 6 cut(s) 335, 432, 494, 1005, 1096, 1269
TatI WGTACW 1 cut(s) 672
TauI GCSGC 2 cut(s) 219, 601
TfiI GAWTC 6 cut(s) 96, 372, 473, 985, 1262, 1289
Tru1I TTAA 1 cut(s) 1247
Tru9I TTAA 1 cut(s) 1247
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 328, 917
TseI GCWGC 2 cut(s) 172, 515
Tsp45I GTSAC 2 cut(s) 328, 917
TspDTI ATGAA 8 cut(s) 212, 297, 327, 441, 674, 1236, 1254, 1301
TspGWI ACGGA 3 cut(s) 49, 150, 223
TspRI CASTG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 205, 231
XapI RAATTY 2 cut(s) 335, 494
XceI RCATGY 3 cut(s) 87, 482, 748
XmaJI CCTAGG 1 cut(s) 593
XspI CTAG 1 cut(s) 594
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.