Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Forward (+)

2327964 .. 2330167

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGTGATCAAGGTTGTTAGAGCTATGATTTTGTTTGTAGTTGAGTTGGGGCAAACATATCACCGGAAAGTTACATATTTCTTCCGGCCACTTTGGGATAAGCCTCCAGCTGCATTCATACAGCTGCCACACTACTATGCAGAAAATGTAAGTATGGACCATCTCTGCCGCCTTCATGGCTGGTCCCAGCGTGCCACCCCACGCCGTATTTTTGATGCCATCATCTTCAGCAATGAATTAGACTTGCTTGATATCAGGTGGCATGAACTTTATCCATATGTCACAAAATTTGTAATCATCGAGTCAAACAGTACTTTCACTGGAATCCCAAAACCTCTCTACTTTGCTTCAAATCGGAACAGGTTTGCCTTTGCTGAGGAAAAAATCATCCACTATGCCTTTCCTGGAAGAACTCTACGCCGAGGTTCACATGCAAACCCCTTCAAACTTGAGAGAAAGCAACGTCTAGCTATGAATGCTTTACTTCAGTATGCAGGGATTTCCTATGGCGATGTCGTGATAATGTCAGATACTGATGAGATCCCTAGCTCGCAGACTTTGAAACTACTGCAATGGTGTGATGGGATCCCTTCTAAAATGCATCTTGAGCTGAAGCACTACATGTACTCATTTGAGTTCCCGGTGGACTATAGCAGCTGGCGGGCTACAGTTCAGATCTACAGCCCGAATACCAAATACCAGCATACCCGGCAAACTGATGACATGCTCTCTGATGCGGGATGGCATTGTAGTTTTTGCTTTCGGCACATTGATGACTTTGTGTTCAAAATGACTGCTTATAGCCACGCAGACCGTGTGAGGCGGAGAGATTTTCTGGATTACAGAAGAATACAGAGGCTCATTTGTCAAGGAGACGATCTTTTCGATATGTTGCCTGAAGAGTACACATTCAAGGACTTGATTAAGAAGATGGGATCGATTCCCAAATCAGCTTCTGCAGTTCATCTTCCTGCTTATTTGATAAAGAATGCAGACAAGTTTAGGTTCCTTCTCCCTGGAGGCTGTATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

345

Amino Acids

40.59

Weight (kDa)

9.21

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	9 - 344	2.4e-174	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	169, 661, 737, 823
AclWI	GGATC	4 cut(s)	535, 580, 593, 943
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	4 cut(s)	211, 470, 632, 918
AfaI	GTAC	3 cut(s)	313, 626, 905
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	5 cut(s)	351, 445, 562, 787, 913
AjnI	CCWGG	2 cut(s)	403, 1015
AluBI	AGCT	8 cut(s)	23, 110, 124, 470, 549, 610, 657, 953
AluI	AGCT	8 cut(s)	23, 110, 124, 470, 549, 610, 657, 953
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	4 cut(s)	535, 580, 593, 943
AlwNI	CAGNNNCTG	2 cut(s)	533, 956
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	110, 124, 654
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspS9I	GGNCC	2 cut(s)	157, 183
AsuC2I	CCSGG	2 cut(s)	641, 709
AsuHPI	GGTGA	2 cut(s)	16, 53
AvaII	GGWCC	2 cut(s)	157, 183
BamHI	GGATCC	1 cut(s)	585
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	97, 111, 666
BccI	CCATC	5 cut(s)	168, 227, 575, 735, 925
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	405, 1017
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	2 cut(s)	641, 709
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	2 cut(s)	467, 546
BfmI	CTRYAG	4 cut(s)	649, 666, 679, 957
BglI	GCCNNNNNGGC	1 cut(s)	177
BglII	AGATCT	1 cut(s)	675
BisI	GCNGC	4 cut(s)	111, 125, 169, 655
BlsI	GCNGC	4 cut(s)	112, 126, 170, 656
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	4 cut(s)	405, 641, 709, 1017
Bme18I	GGWCC	2 cut(s)	157, 183
BmgT120I	GGNCC	2 cut(s)	157, 183
BmiI	GGNNCC	3 cut(s)	185, 587, 1007
BmrFI	CCNGG	4 cut(s)	405, 641, 709, 1017
BmsI	GCATC	3 cut(s)	205, 610, 724
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	470, 626
BpuMI	CCSGG	2 cut(s)	641, 709
Bsa29I	ATCGAT	1 cut(s)	938
BsaJI	CCNNGG	2 cut(s)	421, 1015
BsaWI	WCCGGW	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	2 cut(s)	238, 578
BseBI	CCWGG	2 cut(s)	405, 1017
BseCI	ATCGAT	1 cut(s)	938
BseDI	CCNNGG	2 cut(s)	421, 1015
BseGI	GGATG	2 cut(s)	387, 746
BseMI	GCAATG	2 cut(s)	238, 578
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	97, 111, 666
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	938
BsiSI	CCGG	4 cut(s)	64, 85, 641, 709
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	867
BsmBI	CGTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	3 cut(s)	113, 481, 994
BsnI	GGCC	1 cut(s)	88
Bsp143I	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
BspACI	CCGC	4 cut(s)	169, 661, 737, 823
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	367
BspDI	ATCGAT	1 cut(s)	938
BspLI	GGNNCC	3 cut(s)	185, 587, 1007
BspMAI	CTGCAG	1 cut(s)	961
BspPI	GGATC	4 cut(s)	535, 580, 593, 943
BsrDI	GCAATG	2 cut(s)	238, 578
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	421, 1015
BssMI	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
Bst2UI	CCWGG	2 cut(s)	405, 1017
Bst4CI	ACNGT	3 cut(s)	311, 670, 815
Bst6I	CTCTTC	1 cut(s)	894
BstC8I	GCNNGC	4 cut(s)	192, 551, 659, 663
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	387, 746
BstKTI	GATC	6 cut(s)	9, 543, 588, 678, 880, 938
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 476, 607, 709
BstNI	CCWGG	2 cut(s)	405, 1017
BstNSI	RCATGY	3 cut(s)	434, 625, 727
BstSCI	CCNGG	4 cut(s)	403, 639, 707, 1015
BstSFI	CTRYAG	4 cut(s)	649, 666, 679, 957
BstV1I	GCAGC	3 cut(s)	97, 111, 666
BstX2I	RGATCY	3 cut(s)	540, 585, 675
BstYI	RGATCY	3 cut(s)	540, 585, 675
Bsu15I	ATCGAT	1 cut(s)	938
BsuRI	GGCC	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	938
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	387, 746
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	192, 551, 659, 663
CaiI	CAGNNNCTG	2 cut(s)	533, 956
Cfr13I	GGNCC	2 cut(s)	157, 183
ClaI	ATCGAT	1 cut(s)	938
Csp6I	GTAC	3 cut(s)	312, 625, 904
CviAII	CATG	5 cut(s)	176, 263, 431, 622, 724
CviQI	GTAC	3 cut(s)	312, 625, 904
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	6 cut(s)	8, 542, 587, 677, 879, 937
DpnII	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
EciI	GGCGGA	1 cut(s)	838
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	157, 183
Eco57I	CTGAAG	4 cut(s)	211, 470, 632, 918
EcoRII	CCWGG	2 cut(s)	403, 1015
EcoRV	GATATC	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	867
FaeI	CATG	5 cut(s)	179, 266, 434, 625, 727
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	5 cut(s)	175, 262, 430, 621, 723
FauI	CCCGC	2 cut(s)	654, 730
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	111, 125, 169, 655
FokI	GGATG	2 cut(s)	374, 753
Fsp4HI	GCNGC	4 cut(s)	111, 125, 169, 655
FspBI	CTAG	2 cut(s)	467, 546
GluI	GCNGC	4 cut(s)	111, 125, 169, 655
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	4 cut(s)	64, 85, 641, 709
Hin1II	CATG	5 cut(s)	179, 266, 434, 625, 727
HinfI	GANTC	3 cut(s)	302, 324, 940
HpaII	CCGG	4 cut(s)	64, 85, 641, 709
HphI	GGTGA	2 cut(s)	16, 53
Hpy166II	GTNNAC	3 cut(s)	428, 646, 906
Hpy188I	TCNGA	5 cut(s)	357, 529, 675, 733, 1031
Hpy188III	TCNNGA	3 cut(s)	517, 605, 836
Hpy8I	GTNNAC	3 cut(s)	428, 646, 906
HpyAV	CCTTC	4 cut(s)	182, 451, 600, 1019
HpyCH4III	ACNGT	3 cut(s)	311, 670, 815
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	8 cut(s)	113, 140, 434, 494, 571, 601, 959, 992
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 476, 607, 709
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	5 cut(s)	179, 266, 434, 625, 727
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
Lsp1109I	GCAGC	3 cut(s)	97, 111, 666
LweI	GCATC	3 cut(s)	205, 610, 724
MaeI	CTAG	2 cut(s)	467, 546
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	70, 280
MalI	GATC	6 cut(s)	8, 542, 587, 677, 879, 937
MboI	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
MboII	GAAGA	7 cut(s)	73, 217, 420, 858, 911, 940, 959
MflI	RGATCY	3 cut(s)	540, 585, 675
MluCI	AATT	2 cut(s)	236, 287
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	7 cut(s)	114, 345, 370, 416, 813, 849, 1013
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	2 cut(s)	135, 771
MspA1I	CMGCKG	3 cut(s)	110, 124, 657
MspI	CCGG	4 cut(s)	64, 85, 641, 709
MspR9I	CCNGG	4 cut(s)	405, 641, 709, 1017
Mva1269I	GAATGC	3 cut(s)	113, 481, 994
MvaI	CCWGG	2 cut(s)	405, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	177, 476, 607, 709
NciI	CCSGG	2 cut(s)	641, 709
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
NlaIII	CATG	5 cut(s)	179, 266, 434, 625, 727
NlaIV	GGNNCC	3 cut(s)	185, 587, 1007
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	3 cut(s)	434, 625, 727
PciI	ACATGT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PctI	GAATGC	3 cut(s)	113, 481, 994
PfeI	GAWTC	2 cut(s)	324, 940
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	4 cut(s)	112, 126, 170, 656
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	403, 1015
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	403, 1015
PspN4I	GGNNCC	3 cut(s)	185, 587, 1007
PspPI	GGNCC	2 cut(s)	157, 183
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	2 cut(s)	533, 956
PsuI	RGATCY	3 cut(s)	540, 585, 675
PvuII	CAGCTG	3 cut(s)	110, 124, 657
RsaI	GTAC	3 cut(s)	313, 626, 905
RsaNI	GTAC	3 cut(s)	312, 625, 904
RseI	CAYNNNNRTG	2 cut(s)	135, 771
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	4 cut(s)	111, 125, 169, 655
Sau3AI	GATC	6 cut(s)	6, 540, 585, 675, 877, 935
Sau96I	GGNCC	2 cut(s)	157, 183
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	4 cut(s)	405, 641, 709, 1017
SfaNI	GCATC	3 cut(s)	205, 610, 724
SfcI	CTRYAG	4 cut(s)	649, 666, 679, 957
SinI	GGWCC	2 cut(s)	157, 183
SmiMI	CAYNNNNRTG	2 cut(s)	135, 771
SmlI	CTYRAG	2 cut(s)	449, 605
SmoI	CTYRAG	2 cut(s)	449, 605
Sse9I	AATT	2 cut(s)	236, 287
SsiI	CCGC	4 cut(s)	169, 661, 737, 823
SspMI	CTAG	2 cut(s)	467, 546
StyD4I	CCNGG	4 cut(s)	403, 639, 707, 1015
TaaI	ACNGT	3 cut(s)	311, 670, 815
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	300, 885, 938
TasI	AATT	2 cut(s)	236, 287
TatI	WGTACW	3 cut(s)	311, 624, 903
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	324, 940
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	110, 124, 654
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	6 cut(s)	106, 164, 249, 279, 488, 953
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	157, 183
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	3 cut(s)	434, 625, 727
XspI	CTAG	2 cut(s)	467, 546
ZrmI	AGTACT	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.