Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008385.1

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Reverse (-)

44164 .. 45072

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008385.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggaccatctctgccgccttcatggctggtccgtgcgtgccactccacgccgtatttttgatgccatcatcttcagcaatgaaatagacttgcttgatatcaggtggcatgaactttatccatatgtcacaaaatttgtaatcatcgaggcaaatactactttcactggaatccctaaacctctctactttgcttcaaatcggaacagatttgcctttgctgatgaaaaaattgtgcactatgtctttcctggcacaactcgaagcggagattcacatgcagaccccttcaaatttgagagaatgcaacgtgcagctatggatgatttacttcagcaggcagggatttccaatggcgatgtcctgataatggcggatactgatgagatccctaggccgcagacgttgaaactgttgcaatggtgtggtgggatcccttctaaactgcattttgagatgaagcactacctgtactcatttgagttcccaatggacagcatctggaagactgcatctaatatctacggcccgaataccaggtacatgcattcgaggcaaactgatgacctgctctctgatgcgggatggcattgtagtttttgctttcggcacattgaggagtttgtgttcaagatgggagcttatagccacgcagagcgtgtgaggcggagagactttctggattacagaagaatacagaggctcatttgtcatggtgacgatcttttcgatatgttacctgaagagttcacattcaaggacttgatcaggaagatgggatcgattcccaaatcagcttctgcaattacccttcctgcttatttgataaagaatgcggacaagtttaggtaccttctccctggaggctgtatcagagagactggtagctcttctaattttcctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

302

Amino Acids

35.2

Weight (kDa)

7.69

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	576
Acc65I	GGTACC	1 cut(s)	849
AccB1I	GGYRCC	1 cut(s)	849
AciI	CCGC	7 cut(s)	16, 267, 374, 398, 581, 667, 836
AclWI	GGATC	4 cut(s)	382, 427, 440, 787
AcsI	RAATTY	2 cut(s)	134, 293
AcuI	CTGAAG	3 cut(s)	58, 317, 762
AfaI	GTAC	3 cut(s)	473, 542, 851
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	198, 292, 409, 631, 757
AjnI	CCWGG	3 cut(s)	250, 536, 859
AloI	GAACNNNNNNTCC	2 cut(s)	611, 643
AluBI	AGCT	4 cut(s)	317, 641, 797, 888
AluI	AGCT	4 cut(s)	317, 641, 797, 888
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	2 cut(s)	666, 872
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	4 cut(s)	382, 427, 440, 787
AlwNI	CAGNNNCTG	2 cut(s)	501, 800
AoxI	GGCC	2 cut(s)	395, 526
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	134, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
Asp718I	GGTACC	1 cut(s)	849
AspA2I	CCTAGG	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	4, 30, 527
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	4, 30
AvrII	CCTAGG	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	5 cut(s)	15, 74, 579, 628, 769
BceAI	ACGGC	2 cut(s)	36, 541
BciT130I	CCWGG	3 cut(s)	252, 538, 861
BciVI	GTATCC	1 cut(s)	370
BclI	TGATCA	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	666, 872
BfaI	CTAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	370
BglI	GCCNNNNNGGC	1 cut(s)	24
BisI	GCNGC	3 cut(s)	16, 315, 398
BlnI	CCTAGG	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	17, 316, 399
Bme1390I	CCNGG	3 cut(s)	252, 538, 861
Bme18I	GGWCC	2 cut(s)	4, 30
BmgT120I	GGNCC	3 cut(s)	4, 30, 527
BmiI	GGNNCC	2 cut(s)	434, 851
BmrFI	CCNGG	3 cut(s)	252, 538, 861
BmsI	GCATC	4 cut(s)	52, 507, 521, 568
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	882
Bsa29I	ATCGAT	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	392, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	172, 886
Bse3DI	GCAATG	2 cut(s)	85, 425
BseBI	CCWGG	3 cut(s)	252, 538, 861
BseCI	ATCGAT	1 cut(s)	782
BseDI	CCNNGG	2 cut(s)	392, 859
BseGI	GGATG	2 cut(s)	328, 590
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	2 cut(s)	85, 425
BseNI	ACTGG	2 cut(s)	172, 886
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	397, 528
BshNI	GGYRCC	1 cut(s)	849
BshVI	ATCGAT	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	666, 872
BsmI	GAATGC	3 cut(s)	309, 547, 838
BsnI	GGCC	2 cut(s)	397, 528
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	5 cut(s)	387, 432, 721, 765, 779
BspACI	CCGC	7 cut(s)	16, 267, 374, 398, 581, 667, 836
BspANI	GGCC	2 cut(s)	397, 528
BspDI	ATCGAT	1 cut(s)	782
BspLI	GGNNCC	2 cut(s)	434, 851
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	4 cut(s)	382, 427, 440, 787
BspQI	GCTCTTC	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	849
BsrDI	GCAATG	2 cut(s)	85, 425
BsrI	ACTGG	2 cut(s)	172, 886
BssECI	CCNNGG	2 cut(s)	392, 859
BssMI	GATC	5 cut(s)	387, 432, 721, 765, 779
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	3 cut(s)	252, 538, 861
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	2 cut(s)	738, 895
BstC8I	GCNNGC	2 cut(s)	39, 339
BstF5I	GGATG	2 cut(s)	328, 590
BstKTI	GATC	5 cut(s)	390, 435, 724, 768, 782
BstMAI	GTCTC	2 cut(s)	666, 872
BstMBI	GATC	5 cut(s)	387, 432, 721, 765, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 553, 664
BstNI	CCWGG	3 cut(s)	252, 538, 861
BstNSI	RCATGY	2 cut(s)	281, 547
BstSCI	CCNGG	3 cut(s)	250, 536, 859
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	387, 432
BstYI	RGATCY	2 cut(s)	387, 432
Bsu15I	ATCGAT	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	397, 528
BsuTUI	ATCGAT	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	328, 590
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	39, 339
CaiI	CAGNNNCTG	2 cut(s)	501, 800
Cfr13I	GGNCC	3 cut(s)	4, 30, 527
ClaI	ATCGAT	1 cut(s)	782
CsiI	ACCWGGT	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	472, 541, 850
CviAII	CATG	5 cut(s)	23, 110, 278, 544, 713
CviQI	GTAC	3 cut(s)	472, 541, 850
DpnI	GATC	5 cut(s)	389, 434, 723, 767, 781
DpnII	GATC	5 cut(s)	387, 432, 721, 765, 779
Eam1104I	CTCTTC	2 cut(s)	738, 895
EarI	CTCTTC	2 cut(s)	738, 895
EciI	GGCGGA	2 cut(s)	389, 682
Eco130I	CCWWGG	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	4, 30
Eco57I	CTGAAG	3 cut(s)	58, 317, 762
EcoRII	CCWGG	3 cut(s)	250, 536, 859
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	5 cut(s)	26, 113, 281, 547, 716
FatI	CATG	5 cut(s)	22, 109, 277, 543, 712
FauI	CCCGC	1 cut(s)	574
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	3 cut(s)	16, 315, 398
FokI	GGATG	2 cut(s)	335, 597
Fsp4HI	GCNGC	3 cut(s)	16, 315, 398
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	3 cut(s)	16, 315, 398
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	397, 528
Hin1II	CATG	5 cut(s)	26, 113, 281, 547, 716
HinfI	GANTC	3 cut(s)	171, 272, 784
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	238, 750
Hpy188I	TCNGA	3 cut(s)	204, 577, 875
Hpy188III	TCNNGA	5 cut(s)	364, 502, 631, 680, 769
Hpy8I	GTNNAC	2 cut(s)	238, 750
HpyAV	CCTTC	5 cut(s)	29, 298, 447, 821, 863
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	2 cut(s)	310, 404
HpyCH4V	TGCA	9 cut(s)	238, 281, 307, 314, 418, 448, 512, 547, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 553, 664
HpySE526I	ACGT	2 cut(s)	310, 404
Hsp92II	CATG	5 cut(s)	26, 113, 281, 547, 716
KpnI	GGTACC	1 cut(s)	853
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	5 cut(s)	387, 432, 721, 765, 779
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	1 cut(s)	638
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	4 cut(s)	52, 507, 521, 568
MabI	ACCWGGT	1 cut(s)	536
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	310, 404
MaeIII	GTNAC	3 cut(s)	127, 716, 735
MalI	GATC	5 cut(s)	389, 434, 723, 767, 781
MboI	GATC	5 cut(s)	387, 432, 721, 765, 779
MboII	GAAGA	6 cut(s)	64, 517, 702, 755, 784, 882
MflI	RGATCY	2 cut(s)	387, 432
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	6 cut(s)	134, 231, 293, 804, 895, 904
MnlI	CCTC	7 cut(s)	142, 192, 546, 610, 657, 693, 857
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	1 cut(s)	907
MspR9I	CCNGG	3 cut(s)	252, 538, 861
Mva1269I	GAATGC	3 cut(s)	309, 547, 838
MvaI	CCWGG	3 cut(s)	252, 538, 861
MwoI	GCNNNNNNNGC	3 cut(s)	24, 553, 664
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	5 cut(s)	387, 432, 721, 765, 779
NlaIII	CATG	5 cut(s)	26, 113, 281, 547, 716
NlaIV	GGNNCC	2 cut(s)	434, 851
NmuCI	GTSAC	2 cut(s)	127, 716
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	2 cut(s)	281, 547
PciSI	GCTCTTC	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PctI	GAATGC	3 cut(s)	309, 547, 838
PfeI	GAWTC	3 cut(s)	171, 272, 784
PkrI	GCNGC	3 cut(s)	17, 316, 399
Psp6I	CCWGG	3 cut(s)	250, 536, 859
PspGI	CCWGG	3 cut(s)	250, 536, 859
PspN4I	GGNNCC	2 cut(s)	434, 851
PspPI	GGNCC	3 cut(s)	4, 30, 527
PstNI	CAGNNNCTG	2 cut(s)	501, 800
PsuI	RGATCY	2 cut(s)	387, 432
RsaI	GTAC	3 cut(s)	473, 542, 851
RsaNI	GTAC	3 cut(s)	472, 541, 850
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	1 cut(s)	907
SatI	GCNGC	3 cut(s)	16, 315, 398
Sau3AI	GATC	5 cut(s)	387, 432, 721, 765, 779
Sau96I	GGNCC	3 cut(s)	4, 30, 527
ScrFI	CCNGG	3 cut(s)	252, 538, 861
SduI	GDGCHC	1 cut(s)	240
SexAI	ACCWGGT	1 cut(s)	536
SfaNI	GCATC	4 cut(s)	52, 507, 521, 568
SinI	GGWCC	2 cut(s)	4, 30
Sse9I	AATT	6 cut(s)	134, 231, 293, 804, 895, 904
SsiI	CCGC	7 cut(s)	16, 267, 374, 398, 581, 667, 836
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	3 cut(s)	250, 536, 859
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	2 cut(s)	313, 407
TaqI	TCGA	5 cut(s)	147, 262, 551, 729, 782
TasI	AATT	6 cut(s)	134, 231, 293, 804, 895, 904
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	2 cut(s)	18, 400
TfiI	GAWTC	3 cut(s)	171, 272, 784
Tru1I	TTAA	1 cut(s)	907
Tru9I	TTAA	1 cut(s)	907
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	127, 716
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	2 cut(s)	127, 716
TspDTI	ATGAA	5 cut(s)	11, 96, 126, 240, 473
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	4, 30
XapI	RAATTY	2 cut(s)	134, 293
XceI	RCATGY	2 cut(s)	281, 547
XmaJI	CCTAGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.