FvH4_1g02710

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003347
Physical Location & Seq
Forward (+)
1545058 .. 1548575
3518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02710.t7

Sequence Viewer

Length: 1116 bp
ATGACTAAAGCTCTTGTAATCTTCCTTCACAGCATGGCACCACGATATCTTCGTTCTTCGTTCAGACGGACTCCACGCAAGTTCTTTTGTCTATTATTGTTGTTATTTGTGCCTGCTTGTATATTTGGACTCTATACAGATCACATCAAAGTTTCATATTTCTTCCGGCCACTTTGGGATAAGCCTCCAGCTCCATTTATACGGCTGCCACACTACTATGCTGAAAATGTAAGTTTGGACCATCTCTGCCGCCTTCATGACTGGTCCCTGCGTGCTGCCCCACGCCGTATATTTGATGCCATCATCTTCAGCAATGAATTAGACTTGCTTGATATCAGGTGGCATGAACTTGATCCATATGTCACAAAGTTTTTGATCATCGAGGCGAATACTACTTTCACTGGATTCCCGAAACCTCTCTTCTTTGCTTCAAATTGGAACAGGTTTGCCTTTGCTGAGGAAAAAATTGTCCACTATGTCTTTCCTGGCACAACTCTACTCCGAGGTTCACATACAGACCCCTTCAAACTTGAGAGCATGCAACGTGTAGCTATGAATTCTTTACTTCTGCAAGCAGGGATTTCCTATGGGGATGTCATCATAATGTCAGACGCTGATGAGATCCCTAGCCCGCAGACTTTGAAACTGTTGCAATGGTGTGATGGGATCCCTTATAAAATGCATCTTGAGCTGAAGCACTACATGTACTCGTTTGAGTTCCCAGTGGACTATAGCAGCTGGCGGGCTACAGCTCAGATCTACACCCCAACTACCAAGTACCAGCATATCCGGCAAACTGATGACCTGCTCTCTGATGCAGGATGGCATTGTAGTTTCTGCTTTCGGCACATTGATGACTTTGTGTTCAAGATGACTGCTTATAGCCACGCAGACCGTGTAAGGCGGAGAGACTTTCTGGATTACAGAAGAATACAGAGGCTCATTTGTCAAGGAGACGATCTTTTCGATATGTTGCCTGAAGAGTACACATTCAAGGACCTGATCAAGAAGATGGGATCAATACCCAAATCAGCTTCTGCAGTTTACCTTCCAGCTTATTTGATAAAGAATGCGGAGAAATTTAGATTCCTTCTCCCTGGAGGATGTATCAGATAG

Protein Analysis

372

Amino Acids

43.75

Weight (kDa)

8.87

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 27 - 371 8.4e-172 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
Acc36I ACCTGC 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 5 cut(s) 250, 632, 742, 904, 1073
AclWI GGATC 5 cut(s) 347, 616, 661, 674, 1024
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 2 cut(s) 556, 1079
AcuI CTGAAG 3 cut(s) 292, 713, 999
AfaI GTAC 3 cut(s) 707, 779, 986
AflIII ACRYGT 2 cut(s) 544, 702
AgsI TTSAA 5 cut(s) 432, 526, 643, 868, 994
AjnI CCWGG 2 cut(s) 484, 1096
AluBI AGCT 8 cut(s) 11, 191, 551, 691, 738, 752, 1034, 1055
AluI AGCT 8 cut(s) 11, 191, 551, 691, 738, 752, 1034, 1055
Alw26I GTCTC 2 cut(s) 903, 948
AlwI GGATC 5 cut(s) 347, 616, 661, 674, 1024
AlwNI CAGNNNCTG 2 cut(s) 614, 1037
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 205, 275, 735
ApoI RAATTY 2 cut(s) 556, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AspS9I GGNCC 3 cut(s) 238, 264, 997
AvaII GGWCC 3 cut(s) 238, 264, 997
BamHI GGATCC 1 cut(s) 666
BanI GGYRCC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 192, 262, 747
BccI CCATC 5 cut(s) 249, 308, 656, 816, 1006
BceAI ACGGC 2 cut(s) 218, 270
BciT130I CCWGG 2 cut(s) 486, 1098
BclI TGATCA 2 cut(s) 375, 1002
BcoDI GTCTC 2 cut(s) 903, 948
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 3 cut(s) 730, 747, 1038
BfuAI ACCTGC 1 cut(s) 813
BglII AGATCT 1 cut(s) 756
BisI GCNGC 4 cut(s) 206, 250, 276, 736
BlsI GCNGC 4 cut(s) 207, 251, 277, 737
Bme1390I CCNGG 2 cut(s) 486, 1098
Bme18I GGWCC 3 cut(s) 238, 264, 997
BmgT120I GGNCC 3 cut(s) 238, 264, 997
BmiI GGNNCC 3 cut(s) 39, 266, 668
BmrFI CCNGG 2 cut(s) 486, 1098
BmrI ACTGGG 1 cut(s) 716
BmsI GCATC 3 cut(s) 286, 691, 805
BmuI ACTGGG 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 551, 707
BsaJI CCNNGG 2 cut(s) 502, 1096
Bse1I ACTGG 3 cut(s) 266, 406, 722
Bse3DI GCAATG 2 cut(s) 319, 659
BseBI CCWGG 2 cut(s) 486, 1098
BseDI CCNNGG 2 cut(s) 502, 1096
BseGI GGATG 3 cut(s) 598, 827, 1109
BseMI GCAATG 2 cut(s) 319, 659
BseMII CTCAG 2 cut(s) 447, 767
BseNI ACTGG 3 cut(s) 266, 406, 722
BseXI GCAGC 3 cut(s) 192, 262, 747
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 166, 790
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 2 cut(s) 903, 948
BsmBI CGTCTC 1 cut(s) 948
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 1 cut(s) 169
Bsp143I GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
BspACI CCGC 5 cut(s) 250, 632, 742, 904, 1073
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 448, 766
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 39, 266, 668
BspMAI CTGCAG 1 cut(s) 1042
BspMI ACCTGC 1 cut(s) 813
BspPI GGATC 5 cut(s) 347, 616, 661, 674, 1024
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 319, 659
BsrI ACTGG 3 cut(s) 266, 406, 722
BssECI CCNNGG 2 cut(s) 502, 1096
BssMI GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
Bst2UI CCWGG 2 cut(s) 486, 1098
Bst4CI ACNGT 2 cut(s) 648, 896
Bst6I CTCTTC 2 cut(s) 425, 975
BstC8I GCNNGC 7 cut(s) 114, 273, 539, 573, 632, 740, 744
BstDEI CTNAG 2 cut(s) 456, 753
BstF5I GGATG 3 cut(s) 598, 827, 1109
BstKTI GATC 9 cut(s) 142, 355, 378, 624, 669, 759, 961, 1005, 1019
BstMAI GTCTC 2 cut(s) 903, 948
BstMBI GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
BstMWI GCNNNNNNNGC 2 cut(s) 688, 790
BstNI CCWGG 2 cut(s) 486, 1098
BstNSI RCATGY 2 cut(s) 541, 706
BstSCI CCNGG 2 cut(s) 484, 1096
BstSFI CTRYAG 3 cut(s) 730, 747, 1038
BstV1I GCAGC 3 cut(s) 192, 262, 747
BstX2I RGATCY 3 cut(s) 621, 666, 756
BstYI RGATCY 3 cut(s) 621, 666, 756
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 3 cut(s) 598, 827, 1109
BtsIMutI CAGTG 2 cut(s) 399, 729
BveI ACCTGC 1 cut(s) 813
Cac8I GCNNGC 7 cut(s) 114, 273, 539, 573, 632, 740, 744
CaiI CAGNNNCTG 2 cut(s) 614, 1037
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 238, 264, 997
CseI GACGC 1 cut(s) 620
Csp6I GTAC 3 cut(s) 706, 778, 985
CviAII CATG 5 cut(s) 34, 257, 344, 538, 703
CviQI GTAC 3 cut(s) 706, 778, 985
DdeI CTNAG 2 cut(s) 456, 753
DpnI GATC 9 cut(s) 141, 354, 377, 623, 668, 758, 960, 1004, 1018
DpnII GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 2 cut(s) 425, 975
EarI CTCTTC 2 cut(s) 425, 975
EciI GGCGGA 1 cut(s) 919
Eco32I GATATC 2 cut(s) 47, 334
Eco47I GGWCC 3 cut(s) 238, 264, 997
Eco57I CTGAAG 3 cut(s) 292, 713, 999
EcoO109I RGGNCCY 1 cut(s) 997
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 484, 1096
EcoRV GATATC 2 cut(s) 47, 334
EcoT22I ATGCAT 1 cut(s) 684
Esp3I CGTCTC 1 cut(s) 948
FaeI CATG 5 cut(s) 37, 260, 347, 541, 706
FaqI GGGAC 1 cut(s) 250
FatI CATG 5 cut(s) 33, 256, 343, 537, 702
FauI CCCGC 2 cut(s) 639, 735
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 2 cut(s) 375, 1002
Fnu4HI GCNGC 4 cut(s) 206, 250, 276, 736
FokI GGATG 2 cut(s) 605, 834
Fsp4HI GCNGC 4 cut(s) 206, 250, 276, 736
FspBI CTAG 1 cut(s) 627
GluI GCNGC 4 cut(s) 206, 250, 276, 736
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 169
HapII CCGG 2 cut(s) 166, 790
HgaI GACGC 1 cut(s) 620
Hin1II CATG 5 cut(s) 37, 260, 347, 541, 706
HinfI GANTC 4 cut(s) 70, 129, 405, 1086
HpaII CCGG 2 cut(s) 166, 790
Hpy166II GTNNAC 5 cut(s) 472, 509, 727, 987, 1045
Hpy188I TCNGA 6 cut(s) 65, 503, 610, 756, 814, 1112
Hpy188III TCNNGA 6 cut(s) 257, 409, 686, 868, 917, 1006
Hpy8I GTNNAC 5 cut(s) 472, 509, 727, 987, 1045
HpyAV CCTTC 5 cut(s) 35, 263, 532, 1058, 1100
HpyCH4III ACNGT 2 cut(s) 648, 896
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 6 cut(s) 541, 571, 652, 682, 818, 1040
HpyF10VI GCNNNNNNNGC 2 cut(s) 688, 790
HpyF3I CTNAG 2 cut(s) 456, 753
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 5 cut(s) 37, 260, 347, 541, 706
Ksp22I TGATCA 2 cut(s) 375, 1002
Kzo9I GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 192, 262, 747
LweI GCATC 3 cut(s) 286, 691, 805
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 361
MalI GATC 9 cut(s) 141, 354, 377, 623, 668, 758, 960, 1004, 1018
MboI GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
MboII GAAGA 9 cut(s) 13, 41, 48, 154, 298, 412, 939, 992, 1021
MflI RGATCY 3 cut(s) 621, 666, 756
MluCI AATT 5 cut(s) 317, 433, 465, 556, 1079
MlyI GAGTC 2 cut(s) 64, 123
MnlI CCTC 7 cut(s) 195, 376, 426, 451, 497, 930, 1094
Mph1103I ATGCAT 1 cut(s) 684
MslI CAYNNNNRTG 3 cut(s) 216, 602, 852
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 2 cut(s) 166, 790
MspR9I CCNGG 2 cut(s) 486, 1098
Mva1269I GAATGC 1 cut(s) 1075
MvaI CCWGG 2 cut(s) 486, 1098
MwoI GCNNNNNNNGC 2 cut(s) 688, 790
NdeI CATATG 1 cut(s) 358
NdeII GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
NlaIII CATG 5 cut(s) 37, 260, 347, 541, 706
NlaIV GGNNCC 3 cut(s) 39, 266, 668
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 684
NspI RCATGY 2 cut(s) 541, 706
PaeI GCATGC 1 cut(s) 541
PagI TCATGA 1 cut(s) 256
PciI ACATGT 1 cut(s) 702
PcsI WCGNNNNNNNCGW 2 cut(s) 49, 963
PctI GAATGC 1 cut(s) 1075
PfeI GAWTC 2 cut(s) 405, 1086
PkrI GCNGC 4 cut(s) 207, 251, 277, 737
PleI GAGTC 2 cut(s) 64, 123
PpsI GAGTC 2 cut(s) 64, 123
PpuMI RGGWCCY 1 cut(s) 997
PscI ACATGT 1 cut(s) 702
PsiI TTATAA 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 997
Psp6I CCWGG 2 cut(s) 484, 1096
PspGI CCWGG 2 cut(s) 484, 1096
PspN4I GGNNCC 3 cut(s) 39, 266, 668
PspPI GGNCC 3 cut(s) 238, 264, 997
PspPPI RGGWCCY 1 cut(s) 997
PstI CTGCAG 1 cut(s) 1042
PstNI CAGNNNCTG 2 cut(s) 614, 1037
PsuI RGATCY 3 cut(s) 621, 666, 756
PvuII CAGCTG 1 cut(s) 738
RsaI GTAC 3 cut(s) 707, 779, 986
RsaNI GTAC 3 cut(s) 706, 778, 985
RseI CAYNNNNRTG 3 cut(s) 216, 602, 852
SatI GCNGC 4 cut(s) 206, 250, 276, 736
Sau3AI GATC 9 cut(s) 139, 352, 375, 621, 666, 756, 958, 1002, 1016
Sau96I GGNCC 3 cut(s) 238, 264, 997
SchI GAGTC 2 cut(s) 64, 123
ScrFI CCNGG 2 cut(s) 486, 1098
SfaNI GCATC 3 cut(s) 286, 691, 805
SfcI CTRYAG 3 cut(s) 730, 747, 1038
SinI GGWCC 3 cut(s) 238, 264, 997
SmiMI CAYNNNNRTG 3 cut(s) 216, 602, 852
SmlI CTYRAG 2 cut(s) 530, 686
SmoI CTYRAG 2 cut(s) 530, 686
SphI GCATGC 1 cut(s) 541
Sse9I AATT 5 cut(s) 317, 433, 465, 556, 1079
SsiI CCGC 5 cut(s) 250, 632, 742, 904, 1073
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 2 cut(s) 484, 1096
TaaI ACNGT 2 cut(s) 648, 896
TaiI ACGT 1 cut(s) 547
TaqI TCGA 2 cut(s) 381, 966
TasI AATT 5 cut(s) 317, 433, 465, 556, 1079
TatI WGTACW 2 cut(s) 705, 984
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 405, 1086
TscAI CASTG 2 cut(s) 406, 729
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 3 cut(s) 205, 275, 735
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 144, 245, 330, 360, 569
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 406, 729
VpaK11BI GGWCC 3 cut(s) 238, 264, 997
XapI RAATTY 2 cut(s) 556, 1079
XceI RCATGY 2 cut(s) 541, 706
XspI CTAG 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.