RchiOBHm_Chr2g0087821

Beta-1,4-mannosyl-glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003347
Physical Location & Seq
Reverse (-)
2576965 .. 2578104
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46321

Sequence Viewer

Length: 1140 bp
ATGGCACCACGATATCTTCGTCATACTCCCAGACGGACTCCACGCAAGTTCTTTTATCTCTTACTGTTGATATTCGTGCCTGCATGTATATTTGGACTCTTTATAGATTACCGGAAAGTTACATATTTCCTCCGGCCACTTTGGGATACGCCTCCAGCTCCGTTCACATGGCTGCCACACTACTATGCAGAAAATGTAAGCATGGACCATCTCTGCCGCCTTCATGGCTGGTCCGTGCGTGCCACTCCACGCCGTATTTTTGATGCCATCATCTTCAGCAATGAAATAGACTTGCTTGATATCAGGTGGCATGAACTTTATCCATATGTCACAAAATTTGTAATCATCGAGGCAAATACTACTTTCACTGGAATCTCTAAACCTCTTTACTTCGCTTCAAATCGGAACAGATTTGCCTTTGCTGATGAAAAAATTGTGCACTATGTCTTTCCTGGCACAACTCGAAGAGGAGATTCACATGCAGACCCCTTCAAATTTGAGAGAATGCAACGTGCAGCTATGGATGATTTACTTCGGCAGGCAGGGATTTCCAATGGCGATGTCCTGATAATGGCGGATACTGATGAGATCCCTAGGCCGCAGACGTTGAAACTGTTGCAATGGTGTGGTGGGATCCCTTCTAAACTGCATTTTGAGATGAAGCACTACCTGTACTCATTTGAGTTCCCAATGGACAGCATCTGGAAGACTGCATCTAATATCTACGGCCCGAATACCAGGTACATGCATTCGAGGCAAACTGATGACCTGCTCTCTGATGCGGGATGGCATTGTAGTTTTTGCTTTCGGCACATTGAGGAGTTTGTGTTCAAGATGGGAGCTTATAGCCACGCAGAGCGTGTGAGGCGGAGAGACTTTCTGGATTACAGAAGAATACAGAGGCTCATTTGTCATGGTGACGATCTTTTTGATATGTTACCTGAAGAGTTCACATTCAAGGACTTGATCAGGAAGATGGGATCGATTCCCAAATCAGCTTCTGCAATTAACCTTCCTGCTTATTTGATAAAGAATGCGGACAAGTTTAGGTACCTTCTCCCTGGAGGCTGTATCAGAGAGACTGGTAGCTCTTCTAATTTTCCTAAGGAAAGTAGTTATTCTGATCCTAGTGTTTTTTAG

Protein Analysis

379

Amino Acids

44.59

Weight (kDa)

9.02

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 16 - 360 1.8e-166 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 777
Acc65I GGTACC 1 cut(s) 1050
AccB1I GGYRCC 2 cut(s) 4, 1050
AciI CCGC 6 cut(s) 217, 575, 599, 782, 868, 1037
AclWI GGATC 5 cut(s) 583, 628, 641, 988, 1118
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 2 cut(s) 335, 494
AcuI CTGAAG 2 cut(s) 259, 963
AfaI GTAC 3 cut(s) 674, 743, 1052
AfiI CCNNNNNNNGG 1 cut(s) 571
AgsI TTSAA 5 cut(s) 399, 493, 610, 832, 958
AjnI CCWGG 3 cut(s) 451, 737, 1060
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 5 cut(s) 158, 518, 842, 998, 1089
AluI AGCT 5 cut(s) 158, 518, 842, 998, 1089
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 867, 1073
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 5 cut(s) 583, 628, 641, 988, 1118
AlwNI CAGNNNCTG 2 cut(s) 702, 1001
AoxI GGCC 3 cut(s) 134, 596, 727
ApaLI GTGCAC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 172, 515
ApoI RAATTY 2 cut(s) 335, 494
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
Asp718I GGTACC 1 cut(s) 1050
AspA2I CCTAGG 1 cut(s) 593
AspS9I GGNCC 3 cut(s) 205, 231, 728
AsuHPI GGTGA 1 cut(s) 929
AvaII GGWCC 2 cut(s) 205, 231
AvrII CCTAGG 1 cut(s) 593
AxyI CCTNAGG 1 cut(s) 1104
BaeGI GKGCMC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 633
BanI GGYRCC 2 cut(s) 4, 1050
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 159, 527
BccI CCATC 5 cut(s) 216, 275, 780, 829, 970
BceAI ACGGC 2 cut(s) 237, 742
BciT130I CCWGG 3 cut(s) 453, 739, 1062
BciVI GTATCC 2 cut(s) 139, 571
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 2 cut(s) 867, 1073
BfaI CTAG 2 cut(s) 594, 1128
BfuAI ACCTGC 1 cut(s) 777
BfuI GTATCC 2 cut(s) 139, 571
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 4 cut(s) 173, 217, 516, 599
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 4 cut(s) 174, 218, 517, 600
Bme1390I CCNGG 3 cut(s) 453, 739, 1062
Bme18I GGWCC 2 cut(s) 205, 231
BmgT120I GGNCC 3 cut(s) 205, 231, 728
BmiI GGNNCC 3 cut(s) 6, 635, 1052
BmrFI CCNGG 3 cut(s) 453, 739, 1062
BmsI GCATC 4 cut(s) 253, 708, 722, 769
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 2 cut(s) 138, 1083
Bsa29I ATCGAT 1 cut(s) 983
BsaJI CCNNGG 2 cut(s) 593, 1060
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 2 cut(s) 373, 1087
Bse21I CCTNAGG 1 cut(s) 1104
Bse3DI GCAATG 2 cut(s) 286, 626
BseBI CCWGG 3 cut(s) 453, 739, 1062
BseCI ATCGAT 1 cut(s) 983
BseDI CCNNGG 2 cut(s) 593, 1060
BseGI GGATG 2 cut(s) 529, 791
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 2 cut(s) 286, 626
BseNI ACTGG 2 cut(s) 373, 1087
BseRI GAGGAG 2 cut(s) 483, 833
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 2 cut(s) 159, 527
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 3 cut(s) 136, 598, 729
BshNI GGYRCC 2 cut(s) 4, 1050
BshVI ATCGAT 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 2 cut(s) 112, 133
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 2 cut(s) 867, 1073
BsmI GAATGC 3 cut(s) 510, 748, 1039
BsnI GGCC 3 cut(s) 136, 598, 729
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
BspACI CCGC 6 cut(s) 217, 575, 599, 782, 868, 1037
BspANI GGCC 3 cut(s) 136, 598, 729
BspDI ATCGAT 1 cut(s) 983
BspLI GGNNCC 3 cut(s) 6, 635, 1052
BspMI ACCTGC 1 cut(s) 777
BspPI GGATC 5 cut(s) 583, 628, 641, 988, 1118
BspQI GCTCTTC 1 cut(s) 1096
BspT107I GGYRCC 2 cut(s) 4, 1050
BsrDI GCAATG 2 cut(s) 286, 626
BsrI ACTGG 2 cut(s) 373, 1087
BssECI CCNNGG 2 cut(s) 593, 1060
BssMI GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 3 cut(s) 453, 739, 1062
Bst4CI ACNGT 2 cut(s) 66, 615
Bst6I CTCTTC 3 cut(s) 460, 939, 1096
BstC8I GCNNGC 3 cut(s) 81, 240, 540
BstDEI CTNAG 1 cut(s) 1104
BstF5I GGATG 2 cut(s) 529, 791
BstKTI GATC 6 cut(s) 591, 636, 925, 969, 983, 1126
BstMAI GTCTC 2 cut(s) 867, 1073
BstMBI GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
BstMWI GCNNNNNNNGC 3 cut(s) 225, 754, 865
BstNI CCWGG 3 cut(s) 453, 739, 1062
BstNSI RCATGY 3 cut(s) 87, 482, 748
BstSCI CCNGG 3 cut(s) 451, 737, 1060
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 159, 527
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 588, 633
BstYI RGATCY 2 cut(s) 588, 633
Bsu15I ATCGAT 1 cut(s) 983
Bsu36I CCTNAGG 1 cut(s) 1104
BsuI GTATCC 2 cut(s) 139, 571
BsuRI GGCC 3 cut(s) 136, 598, 729
BsuTUI ATCGAT 1 cut(s) 983
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 529, 791
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 777
Cac8I GCNNGC 3 cut(s) 81, 240, 540
CaiI CAGNNNCTG 2 cut(s) 702, 1001
Cfr13I GGNCC 3 cut(s) 205, 231, 728
ClaI ATCGAT 1 cut(s) 983
CsiI ACCWGGT 1 cut(s) 737
Csp6I GTAC 3 cut(s) 673, 742, 1051
CviAII CATG 8 cut(s) 84, 168, 202, 224, 311, 479, 745, 914
CviQI GTAC 3 cut(s) 673, 742, 1051
DdeI CTNAG 1 cut(s) 1104
DpnI GATC 6 cut(s) 590, 635, 924, 968, 982, 1125
DpnII GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 460, 939, 1096
EarI CTCTTC 3 cut(s) 460, 939, 1096
EciI GGCGGA 2 cut(s) 590, 883
Eco130I CCWWGG 1 cut(s) 593
Eco32I GATATC 2 cut(s) 14, 301
Eco47I GGWCC 2 cut(s) 205, 231
Eco57I CTGAAG 2 cut(s) 259, 963
Eco81I CCTNAGG 1 cut(s) 1104
EcoRII CCWGG 3 cut(s) 451, 737, 1060
EcoRV GATATC 2 cut(s) 14, 301
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 8 cut(s) 87, 171, 205, 227, 314, 482, 748, 917
FatI CATG 8 cut(s) 83, 167, 201, 223, 310, 478, 744, 913
FauI CCCGC 1 cut(s) 775
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 966
Fnu4HI GCNGC 4 cut(s) 173, 217, 516, 599
FokI GGATG 2 cut(s) 536, 798
Fsp4HI GCNGC 4 cut(s) 173, 217, 516, 599
FspBI CTAG 2 cut(s) 594, 1128
GluI GCNGC 4 cut(s) 173, 217, 516, 599
GsuI CTGGAG 2 cut(s) 138, 1083
HaeIII GGCC 3 cut(s) 136, 598, 729
HapII CCGG 2 cut(s) 112, 133
Hin1II CATG 8 cut(s) 87, 171, 205, 227, 314, 482, 748, 917
HinfI GANTC 5 cut(s) 37, 96, 372, 473, 985
HpaII CCGG 2 cut(s) 112, 133
HphI GGTGA 1 cut(s) 929
Hpy166II GTNNAC 3 cut(s) 165, 439, 951
Hpy188I TCNGA 4 cut(s) 405, 778, 1076, 1123
Hpy188III TCNNGA 5 cut(s) 565, 703, 832, 881, 970
Hpy8I GTNNAC 3 cut(s) 165, 439, 951
HpyAV CCTTC 5 cut(s) 230, 499, 648, 1022, 1064
HpyCH4III ACNGT 2 cut(s) 66, 615
HpyCH4IV ACGT 2 cut(s) 511, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 754, 865
HpyF3I CTNAG 1 cut(s) 1104
HpySE526I ACGT 2 cut(s) 511, 605
Hsp92II CATG 8 cut(s) 87, 171, 205, 227, 314, 482, 748, 917
KpnI GGTACC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
LguI GCTCTTC 1 cut(s) 1096
LmnI GCTCC 2 cut(s) 163, 839
Lsp1109I GCAGC 2 cut(s) 159, 527
LweI GCATC 4 cut(s) 253, 708, 722, 769
MabI ACCWGGT 1 cut(s) 737
MaeI CTAG 2 cut(s) 594, 1128
MaeII ACGT 2 cut(s) 511, 605
MaeIII GTNAC 4 cut(s) 118, 328, 917, 936
MalI GATC 6 cut(s) 590, 635, 924, 968, 982, 1125
MboI GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
MboII GAAGA 8 cut(s) 8, 265, 477, 718, 903, 956, 985, 1083
MflI RGATCY 2 cut(s) 588, 633
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 335, 432, 494, 1005, 1096
MlyI GAGTC 2 cut(s) 31, 90
Mph1103I ATGCAT 1 cut(s) 750
MseI TTAA 1 cut(s) 1008
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 2 cut(s) 112, 133
MspR9I CCNGG 3 cut(s) 453, 739, 1062
Mva1269I GAATGC 3 cut(s) 510, 748, 1039
MvaI CCWGG 3 cut(s) 453, 739, 1062
MwoI GCNNNNNNNGC 3 cut(s) 225, 754, 865
NdeI CATATG 1 cut(s) 325
NdeII GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
NlaIII CATG 8 cut(s) 87, 171, 205, 227, 314, 482, 748, 917
NlaIV GGNNCC 3 cut(s) 6, 635, 1052
NmuCI GTSAC 2 cut(s) 328, 917
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 3 cut(s) 87, 482, 748
PciSI GCTCTTC 1 cut(s) 1096
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PctI GAATGC 3 cut(s) 510, 748, 1039
PfeI GAWTC 3 cut(s) 372, 473, 985
PkrI GCNGC 4 cut(s) 174, 218, 517, 600
PleI GAGTC 2 cut(s) 31, 90
PpsI GAGTC 2 cut(s) 31, 90
Psp6I CCWGG 3 cut(s) 451, 737, 1060
PspGI CCWGG 3 cut(s) 451, 737, 1060
PspN4I GGNNCC 3 cut(s) 6, 635, 1052
PspPI GGNCC 3 cut(s) 205, 231, 728
PstNI CAGNNNCTG 2 cut(s) 702, 1001
PsuI RGATCY 2 cut(s) 588, 633
RsaI GTAC 3 cut(s) 674, 743, 1052
RsaNI GTAC 3 cut(s) 673, 742, 1051
RseI CAYNNNNRTG 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 1096
SaqAI TTAA 1 cut(s) 1008
SatI GCNGC 4 cut(s) 173, 217, 516, 599
Sau3AI GATC 6 cut(s) 588, 633, 922, 966, 980, 1123
Sau96I GGNCC 3 cut(s) 205, 231, 728
SchI GAGTC 2 cut(s) 31, 90
ScrFI CCNGG 3 cut(s) 453, 739, 1062
SduI GDGCHC 1 cut(s) 441
SexAI ACCWGGT 1 cut(s) 737
SfaNI GCATC 4 cut(s) 253, 708, 722, 769
SinI GGWCC 2 cut(s) 205, 231
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 5 cut(s) 335, 432, 494, 1005, 1096
SsiI CCGC 6 cut(s) 217, 575, 599, 782, 868, 1037
SspMI CTAG 2 cut(s) 594, 1128
StyD4I CCNGG 3 cut(s) 451, 737, 1060
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 2 cut(s) 66, 615
TaiI ACGT 2 cut(s) 514, 608
TaqI TCGA 4 cut(s) 348, 463, 752, 983
TasI AATT 5 cut(s) 335, 432, 494, 1005, 1096
TatI WGTACW 1 cut(s) 672
TauI GCSGC 2 cut(s) 219, 601
TfiI GAWTC 3 cut(s) 372, 473, 985
Tru1I TTAA 1 cut(s) 1008
Tru9I TTAA 1 cut(s) 1008
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 328, 917
TseI GCWGC 2 cut(s) 172, 515
Tsp45I GTSAC 2 cut(s) 328, 917
TspDTI ATGAA 5 cut(s) 212, 297, 327, 441, 674
TspGWI ACGGA 3 cut(s) 49, 150, 223
TspRI CASTG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 205, 231
XapI RAATTY 2 cut(s) 335, 494
XceI RCATGY 3 cut(s) 87, 482, 748
XmaJI CCTAGG 1 cut(s) 593
XspI CTAG 2 cut(s) 594, 1128
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.