Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Reverse (-)

2137343 .. 2139184

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG032900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCACCACGATCTCTTCGTCATACTCCCAGACGGACTCCACGCAAGTTCTTTTATCTCTTACTGTTGATATTCGTGCCTGCATGTATATTTGGACTCTTTATAGATTACCGGAAAGTTACATATTTCCTCCGGCCACTTTGGGATACGCCTCCAGCTCCGTTCACATGGCTGCCACACTACTATGCAGAAAATGTAAGCATGGACCATCTCTGCCGCCTTCATGGCTGGTCCGTGCGTGCCACTCCACGCCGTATTTTTGATGCCATCATCTTCAGCAATGAAATAGACTTGCTTGATATCAGGTGGCATGAACTTTATCCATATGTCACAAAATTTGTAATCATCGAGGCAAATACTACTTTCACTGGAATCCCTAAACCTCTCTACTTTGCTTCAAATCGGAACAGATTTGCCTTTGCTGATGAAAAAATTGTGCACTATGTCTTTCCTGGCACAACTCGAAGCGGAGATTCACATGCAGACCCCTTCAAATTTGAGAGAATGCAACGTGCAGCTATGGATGATTTACTTCAGCAGGCAGGGATTTCCAATGGCGATGTCCTGATAATGGCGGATACTGATGAGATCCCTAGGCCGCAGACGTTGAAACTGTTGCAATGGTGTGGTGGGATCCCTTCTAAACTGCATTTTGAGATGAAGCACTACCTGTACTCATTTGAGTTCCCAATGGACAGCATCTGGAAGACTGCATCTAATATCTACGGCCCGAATACCAGGTACATGCATTCGAGGCAAACTGATGACCTGCTCTCTGATGCGGGATGGCATTGTAGTTTTTGCTTTCGGCACATTGAGGAGTTTGTGTTCAAGATGGGAGCTTATAGCCACGCAGAGCGTGTGAGGCGGAGAGACTTTCTGGATTACAGAAGAATACAGAGGCTCATTTGTCATGGTGACGATCTTTTCGATATGTTACCTGAAGAGTTCACATTCAAGGACTTGATCAGGAAGATGGGATCGATTCCCAGATCAGCTTCTGCAATGACCCTTCCTGCTTATTTGATAAAGAATGCGGACAAGTTTAGATACCTTCTCCCTGGAGGCTGTATCAGAGAGACTGGTAGCTCTTCTAATTTTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

369

Amino Acids

43.35

Weight (kDa)

8.96

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	16 - 360	1.3e-166	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	7 cut(s)	217, 468, 575, 599, 782, 868, 1037
AclWI	GGATC	4 cut(s)	583, 628, 641, 988
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	335, 494
AcuI	CTGAAG	3 cut(s)	259, 518, 963
AfaI	GTAC	2 cut(s)	674, 743
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	5 cut(s)	399, 493, 610, 832, 958
AjnI	CCWGG	3 cut(s)	451, 737, 1060
AloI	GAACNNNNNNTCC	2 cut(s)	812, 844
AluBI	AGCT	5 cut(s)	158, 518, 842, 998, 1089
AluI	AGCT	5 cut(s)	158, 518, 842, 998, 1089
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	867, 1073
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	4 cut(s)	583, 628, 641, 988
AlwNI	CAGNNNCTG	2 cut(s)	702, 1001
AoxI	GGCC	3 cut(s)	134, 596, 727
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	172, 515
ApoI	RAATTY	2 cut(s)	335, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	911, 943
AspA2I	CCTAGG	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	205, 231, 728
AsuHPI	GGTGA	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	205, 231
AvrII	CCTAGG	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	159, 527
BccI	CCATC	5 cut(s)	216, 275, 780, 829, 970
BceAI	ACGGC	2 cut(s)	237, 742
BciT130I	CCWGG	3 cut(s)	453, 739, 1062
BciVI	GTATCC	2 cut(s)	139, 571
BclI	TGATCA	1 cut(s)	966
BcoDI	GTCTC	2 cut(s)	867, 1073
BfaI	CTAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	777
BfuI	GTATCC	2 cut(s)	139, 571
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	4 cut(s)	173, 217, 516, 599
BlnI	CCTAGG	1 cut(s)	593
BlsI	GCNGC	4 cut(s)	174, 218, 517, 600
Bme1390I	CCNGG	3 cut(s)	453, 739, 1062
Bme18I	GGWCC	2 cut(s)	205, 231
BmgT120I	GGNCC	3 cut(s)	205, 231, 728
BmiI	GGNNCC	2 cut(s)	6, 635
BmrFI	CCNGG	3 cut(s)	453, 739, 1062
BmsI	GCATC	4 cut(s)	253, 708, 722, 769
BpiI	GAAGAC	1 cut(s)	713
BpmI	CTGGAG	2 cut(s)	138, 1083
Bsa29I	ATCGAT	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	593, 1060
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	812, 842
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	373, 1087
Bse3DI	GCAATG	3 cut(s)	286, 626, 1011
BseBI	CCWGG	3 cut(s)	453, 739, 1062
BseCI	ATCGAT	1 cut(s)	983
BseDI	CCNNGG	2 cut(s)	593, 1060
BseGI	GGATG	2 cut(s)	529, 791
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	3 cut(s)	286, 626, 1011
BseNI	ACTGG	2 cut(s)	373, 1087
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	159, 527
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	136, 598, 729
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	983
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	112, 133
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	2 cut(s)	867, 1073
BsmI	GAATGC	3 cut(s)	510, 748, 1039
BsnI	GGCC	3 cut(s)	136, 598, 729
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
BspACI	CCGC	7 cut(s)	217, 468, 575, 599, 782, 868, 1037
BspANI	GGCC	3 cut(s)	136, 598, 729
BspDI	ATCGAT	1 cut(s)	983
BspLI	GGNNCC	2 cut(s)	6, 635
BspMI	ACCTGC	1 cut(s)	777
BspPI	GGATC	4 cut(s)	583, 628, 641, 988
BspQI	GCTCTTC	1 cut(s)	1096
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	286, 626, 1011
BsrI	ACTGG	2 cut(s)	373, 1087
BssECI	CCNNGG	2 cut(s)	593, 1060
BssMI	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	3 cut(s)	453, 739, 1062
Bst4CI	ACNGT	2 cut(s)	66, 615
Bst6I	CTCTTC	3 cut(s)	21, 939, 1096
BstC8I	GCNNGC	3 cut(s)	81, 240, 540
BstF5I	GGATG	2 cut(s)	529, 791
BstKTI	GATC	7 cut(s)	14, 591, 636, 925, 969, 983, 995
BstMAI	GTCTC	2 cut(s)	867, 1073
BstMBI	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 754, 865
BstNI	CCWGG	3 cut(s)	453, 739, 1062
BstNSI	RCATGY	3 cut(s)	87, 482, 748
BstSCI	CCNGG	3 cut(s)	451, 737, 1060
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	159, 527
BstV2I	GAAGAC	1 cut(s)	713
BstX2I	RGATCY	2 cut(s)	588, 633
BstYI	RGATCY	2 cut(s)	588, 633
Bsu15I	ATCGAT	1 cut(s)	983
BsuI	GTATCC	2 cut(s)	139, 571
BsuRI	GGCC	3 cut(s)	136, 598, 729
BsuTUI	ATCGAT	1 cut(s)	983
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	529, 791
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	3 cut(s)	81, 240, 540
CaiI	CAGNNNCTG	2 cut(s)	702, 1001
Cfr13I	GGNCC	3 cut(s)	205, 231, 728
ClaI	ATCGAT	1 cut(s)	983
CsiI	ACCWGGT	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	673, 742
CviAII	CATG	8 cut(s)	84, 168, 202, 224, 311, 479, 745, 914
CviQI	GTAC	2 cut(s)	673, 742
DpnI	GATC	7 cut(s)	13, 590, 635, 924, 968, 982, 994
DpnII	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	21, 939, 1096
EarI	CTCTTC	3 cut(s)	21, 939, 1096
EciI	GGCGGA	2 cut(s)	590, 883
Eco130I	CCWWGG	1 cut(s)	593
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	205, 231
Eco57I	CTGAAG	3 cut(s)	259, 518, 963
EcoRII	CCWGG	3 cut(s)	451, 737, 1060
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	8 cut(s)	87, 171, 205, 227, 314, 482, 748, 917
FatI	CATG	8 cut(s)	83, 167, 201, 223, 310, 478, 744, 913
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	966
Fnu4HI	GCNGC	4 cut(s)	173, 217, 516, 599
FokI	GGATG	2 cut(s)	536, 798
Fsp4HI	GCNGC	4 cut(s)	173, 217, 516, 599
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	4 cut(s)	173, 217, 516, 599
GsuI	CTGGAG	2 cut(s)	138, 1083
HaeIII	GGCC	3 cut(s)	136, 598, 729
HapII	CCGG	2 cut(s)	112, 133
Hin1II	CATG	8 cut(s)	87, 171, 205, 227, 314, 482, 748, 917
HinfI	GANTC	5 cut(s)	37, 96, 372, 473, 985
HpaII	CCGG	2 cut(s)	112, 133
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	3 cut(s)	165, 439, 951
Hpy188I	TCNGA	3 cut(s)	405, 778, 1076
Hpy188III	TCNNGA	5 cut(s)	565, 703, 832, 881, 970
Hpy8I	GTNNAC	3 cut(s)	165, 439, 951
HpyAV	CCTTC	5 cut(s)	230, 499, 648, 1022, 1064
HpyCH4III	ACNGT	2 cut(s)	66, 615
HpyCH4IV	ACGT	2 cut(s)	511, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 754, 865
HpySE526I	ACGT	2 cut(s)	511, 605
Hsp92II	CATG	8 cut(s)	87, 171, 205, 227, 314, 482, 748, 917
Ksp22I	TGATCA	1 cut(s)	966
Kzo9I	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
LguI	GCTCTTC	1 cut(s)	1096
LmnI	GCTCC	2 cut(s)	163, 839
Lsp1109I	GCAGC	2 cut(s)	159, 527
LweI	GCATC	4 cut(s)	253, 708, 722, 769
MabI	ACCWGGT	1 cut(s)	737
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	2 cut(s)	511, 605
MaeIII	GTNAC	4 cut(s)	118, 328, 917, 936
MalI	GATC	7 cut(s)	13, 590, 635, 924, 968, 982, 994
MboI	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
MboII	GAAGA	7 cut(s)	8, 265, 718, 903, 956, 985, 1083
MflI	RGATCY	2 cut(s)	588, 633
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	5 cut(s)	335, 432, 494, 1096, 1105
MlyI	GAGTC	2 cut(s)	31, 90
MnlI	CCTC	9 cut(s)	140, 162, 343, 393, 747, 811, 858, 894, 1058
Mph1103I	ATGCAT	1 cut(s)	750
MseI	TTAA	1 cut(s)	1108
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	2 cut(s)	112, 133
MspR9I	CCNGG	3 cut(s)	453, 739, 1062
Mva1269I	GAATGC	3 cut(s)	510, 748, 1039
MvaI	CCWGG	3 cut(s)	453, 739, 1062
MwoI	GCNNNNNNNGC	3 cut(s)	225, 754, 865
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
NlaIII	CATG	8 cut(s)	87, 171, 205, 227, 314, 482, 748, 917
NlaIV	GGNNCC	2 cut(s)	6, 635
NmuCI	GTSAC	2 cut(s)	328, 917
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	3 cut(s)	87, 482, 748
PciSI	GCTCTTC	1 cut(s)	1096
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 927
PctI	GAATGC	3 cut(s)	510, 748, 1039
PfeI	GAWTC	3 cut(s)	372, 473, 985
PkrI	GCNGC	4 cut(s)	174, 218, 517, 600
PleI	GAGTC	2 cut(s)	31, 90
PpsI	GAGTC	2 cut(s)	31, 90
Psp6I	CCWGG	3 cut(s)	451, 737, 1060
PspGI	CCWGG	3 cut(s)	451, 737, 1060
PspN4I	GGNNCC	2 cut(s)	6, 635
PspPI	GGNCC	3 cut(s)	205, 231, 728
PstNI	CAGNNNCTG	2 cut(s)	702, 1001
PsuI	RGATCY	2 cut(s)	588, 633
RsaI	GTAC	2 cut(s)	674, 743
RsaNI	GTAC	2 cut(s)	673, 742
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	1096
SaqAI	TTAA	1 cut(s)	1108
SatI	GCNGC	4 cut(s)	173, 217, 516, 599
Sau3AI	GATC	7 cut(s)	11, 588, 633, 922, 966, 980, 992
Sau96I	GGNCC	3 cut(s)	205, 231, 728
SchI	GAGTC	2 cut(s)	31, 90
ScrFI	CCNGG	3 cut(s)	453, 739, 1062
SduI	GDGCHC	1 cut(s)	441
SexAI	ACCWGGT	1 cut(s)	737
SfaNI	GCATC	4 cut(s)	253, 708, 722, 769
SinI	GGWCC	2 cut(s)	205, 231
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	5 cut(s)	335, 432, 494, 1096, 1105
SsiI	CCGC	7 cut(s)	217, 468, 575, 599, 782, 868, 1037
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	3 cut(s)	451, 737, 1060
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	66, 615
TaiI	ACGT	2 cut(s)	514, 608
TaqI	TCGA	5 cut(s)	348, 463, 752, 930, 983
TasI	AATT	5 cut(s)	335, 432, 494, 1096, 1105
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	2 cut(s)	219, 601
TfiI	GAWTC	3 cut(s)	372, 473, 985
Tru1I	TTAA	1 cut(s)	1108
Tru9I	TTAA	1 cut(s)	1108
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	328, 917
TseI	GCWGC	2 cut(s)	172, 515
Tsp45I	GTSAC	2 cut(s)	328, 917
TspDTI	ATGAA	5 cut(s)	212, 297, 327, 441, 674
TspGWI	ACGGA	3 cut(s)	49, 150, 223
TspRI	CASTG	1 cut(s)	373
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	205, 231
XapI	RAATTY	2 cut(s)	335, 494
XceI	RCATGY	3 cut(s)	87, 482, 748
XmaJI	CCTAGG	1 cut(s)	593
XspI	CTAG	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.