Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008385.1

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Forward (+)

18632 .. 19720

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008385.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggcaccacgaactcttcctcttcgtcctacttccagacggactccacgcaagttcttttgtctgttactgttgatatttgtgcctgcatgtatatttggactctatactgatcaccggaaagttacatatttcttccggccactttgggataagcctccagctccgttcatacagctgccacactactatgcagaaaatgtaagtatggaccatctctgccgccttcatggctggtccctgcgtgccaccccacgccgtatttttgatgccatcatcttcagcaatgaattagacttgcttgatatcaggtggcatgaactttatccatatgtcacaaaatttgtaatcatcgagtcaaatagtactttcactggaatcccaaaacctctctactttgcttcaaatcggaacaggtttgcctttgctgaggaaaaaatcatccactatgcctttcctggaagaactctacgccaaggttcacatgcaaaccccttcaaacttgagagaaagcaacgtgtagctatgaatgctttacttcagtatgcagggatttcctatggcgatgtcgtgataatgtcagatactgatgagatccctagctcgcagactttgaaactattgcaatggtgtgatgggatcccttctaaaatgcatcttgagctgaagcactacatgtactcatttgagttcccggtggactatagcagctggcgggctacagctcagatctacagcccgaataccaaataccagcatacccggcaaactgatgacatgctctctgatgcgggatggcattgtagtttttgctttcggcacattgatgattttgtgttcaaaatgactgcttatagccacgcagaccgtgtgaggcggagagattttctggattacagaagaatacagaggctcatttgtcaaggaaacgatcttttcgatatgttgcctgaagagtacacattcaaggacttgattaagaagatgggatcgattcccaaatcagcttctgcagttcatcttcctgcttatttgataaagaatgcagacgagtttaggttccttctccctggaggctgtatcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

362

Amino Acids

42.64

Weight (kDa)

9.27

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	4 cut(s)	223, 715, 791, 877
AclWI	GGATC	4 cut(s)	589, 634, 647, 997
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	4 cut(s)	265, 524, 686, 972
AfaI	GTAC	3 cut(s)	367, 680, 959
AflIII	ACRYGT	2 cut(s)	517, 675
AgsI	TTSAA	5 cut(s)	405, 499, 616, 841, 967
AjnI	CCWGG	2 cut(s)	457, 1069
AluBI	AGCT	8 cut(s)	164, 178, 524, 603, 664, 711, 725, 1007
AluI	AGCT	8 cut(s)	164, 178, 524, 603, 664, 711, 725, 1007
AlwI	GGATC	4 cut(s)	589, 634, 647, 997
AlwNI	CAGNNNCTG	2 cut(s)	587, 1010
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	178, 708
ApoI	RAATTY	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	211, 237
AsuC2I	CCSGG	2 cut(s)	695, 763
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	211, 237
BamHI	GGATCC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	165, 720
BccI	CCATC	5 cut(s)	222, 281, 629, 789, 979
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	459, 1071
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	695, 763
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	4 cut(s)	703, 720, 733, 1011
BglI	GCCNNNNNGGC	1 cut(s)	231
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	3 cut(s)	179, 223, 709
BlsI	GCNGC	3 cut(s)	180, 224, 710
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	4 cut(s)	459, 695, 763, 1071
Bme18I	GGWCC	2 cut(s)	211, 237
BmgT120I	GGNCC	2 cut(s)	211, 237
BmiI	GGNNCC	4 cut(s)	6, 239, 641, 1061
BmrFI	CCNGG	4 cut(s)	459, 695, 763, 1071
BmsI	GCATC	3 cut(s)	259, 664, 778
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	524, 680
BpuMI	CCSGG	2 cut(s)	695, 763
Bsa29I	ATCGAT	1 cut(s)	992
BsaJI	CCNNGG	2 cut(s)	475, 1069
BsaWI	WCCGGW	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	292, 632
BseBI	CCWGG	2 cut(s)	459, 1071
BseCI	ATCGAT	1 cut(s)	992
BseDI	CCNNGG	2 cut(s)	475, 1069
BseGI	GGATG	2 cut(s)	441, 800
BseMI	GCAATG	2 cut(s)	292, 632
BseMII	CTCAG	2 cut(s)	420, 740
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	165, 720
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	992
BsiSI	CCGG	4 cut(s)	118, 139, 695, 763
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	2 cut(s)	535, 1048
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
BspACI	CCGC	4 cut(s)	223, 715, 791, 877
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	421, 739
BspDI	ATCGAT	1 cut(s)	992
BspLI	GGNNCC	4 cut(s)	6, 239, 641, 1061
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	4 cut(s)	589, 634, 647, 997
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	292, 632
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	475, 1069
BssMI	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	2 cut(s)	459, 1071
Bst4CI	ACNGT	2 cut(s)	72, 869
Bst6I	CTCTTC	3 cut(s)	21, 27, 948
BstC8I	GCNNGC	5 cut(s)	87, 246, 605, 713, 717
BstDEI	CTNAG	2 cut(s)	429, 726
BstF5I	GGATG	2 cut(s)	441, 800
BstKTI	GATC	6 cut(s)	115, 597, 642, 732, 934, 992
BstMBI	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 530, 661, 763
BstNI	CCWGG	2 cut(s)	459, 1071
BstNSI	RCATGY	4 cut(s)	93, 488, 679, 781
BstSCI	CCNGG	4 cut(s)	457, 693, 761, 1069
BstSFI	CTRYAG	4 cut(s)	703, 720, 733, 1011
BstV1I	GCAGC	2 cut(s)	165, 720
BstX2I	RGATCY	3 cut(s)	594, 639, 729
BstYI	RGATCY	3 cut(s)	594, 639, 729
Bsu15I	ATCGAT	1 cut(s)	992
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	992
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	441, 800
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	5 cut(s)	87, 246, 605, 713, 717
CaiI	CAGNNNCTG	2 cut(s)	587, 1010
Cfr13I	GGNCC	2 cut(s)	211, 237
ClaI	ATCGAT	1 cut(s)	992
Csp6I	GTAC	3 cut(s)	366, 679, 958
CviAII	CATG	6 cut(s)	90, 230, 317, 485, 676, 778
CviQI	GTAC	3 cut(s)	366, 679, 958
DdeI	CTNAG	2 cut(s)	429, 726
DpnI	GATC	6 cut(s)	114, 596, 641, 731, 933, 991
DpnII	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	3 cut(s)	21, 27, 948
EarI	CTCTTC	3 cut(s)	21, 27, 948
EciI	GGCGGA	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	211, 237
Eco57I	CTGAAG	4 cut(s)	265, 524, 686, 972
EcoRII	CCWGG	2 cut(s)	457, 1069
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	6 cut(s)	93, 233, 320, 488, 679, 781
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	6 cut(s)	89, 229, 316, 484, 675, 777
FauI	CCCGC	2 cut(s)	708, 784
FauNDI	CATATG	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	179, 223, 709
FokI	GGATG	2 cut(s)	428, 807
Fsp4HI	GCNGC	3 cut(s)	179, 223, 709
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	3 cut(s)	179, 223, 709
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	118, 139, 695, 763
Hin1II	CATG	6 cut(s)	93, 233, 320, 488, 679, 781
HinfI	GANTC	5 cut(s)	43, 102, 356, 378, 994
HpaII	CCGG	4 cut(s)	118, 139, 695, 763
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	482, 700, 960
Hpy188I	TCNGA	5 cut(s)	411, 583, 729, 787, 1085
Hpy188III	TCNNGA	4 cut(s)	36, 571, 659, 890
Hpy8I	GTNNAC	3 cut(s)	482, 700, 960
HpyAV	CCTTC	4 cut(s)	236, 505, 654, 1073
HpyCH4III	ACNGT	2 cut(s)	72, 869
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	8 cut(s)	89, 194, 488, 548, 625, 655, 1013, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 530, 661, 763
HpyF3I	CTNAG	2 cut(s)	429, 726
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	6 cut(s)	93, 233, 320, 488, 679, 781
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	2 cut(s)	165, 720
LweI	GCATC	3 cut(s)	259, 664, 778
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	3 cut(s)	66, 124, 334
MalI	GATC	6 cut(s)	114, 596, 641, 731, 933, 991
MboI	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
MboII	GAAGA	9 cut(s)	8, 14, 127, 271, 474, 912, 965, 994, 1013
MflI	RGATCY	3 cut(s)	594, 639, 729
MluCI	AATT	2 cut(s)	290, 341
MlyI	GAGTC	3 cut(s)	37, 96, 365
MnlI	CCTC	7 cut(s)	30, 168, 399, 424, 867, 903, 1067
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	1 cut(s)	978
MslI	CAYNNNNRTG	2 cut(s)	189, 825
MspA1I	CMGCKG	2 cut(s)	178, 711
MspI	CCGG	4 cut(s)	118, 139, 695, 763
MspR9I	CCNGG	4 cut(s)	459, 695, 763, 1071
Mva1269I	GAATGC	2 cut(s)	535, 1048
MvaI	CCWGG	2 cut(s)	459, 1071
MwoI	GCNNNNNNNGC	4 cut(s)	231, 530, 661, 763
NciI	CCSGG	2 cut(s)	695, 763
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
NlaIII	CATG	6 cut(s)	93, 233, 320, 488, 679, 781
NlaIV	GGNNCC	4 cut(s)	6, 239, 641, 1061
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	4 cut(s)	93, 488, 679, 781
PciI	ACATGT	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	936
PctI	GAATGC	2 cut(s)	535, 1048
PfeI	GAWTC	2 cut(s)	378, 994
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	180, 224, 710
PleI	GAGTC	3 cut(s)	37, 96, 364
PpsI	GAGTC	3 cut(s)	37, 96, 364
PscI	ACATGT	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	457, 1069
PspGI	CCWGG	2 cut(s)	457, 1069
PspN4I	GGNNCC	4 cut(s)	6, 239, 641, 1061
PspPI	GGNCC	2 cut(s)	211, 237
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	2 cut(s)	587, 1010
PsuI	RGATCY	3 cut(s)	594, 639, 729
PvuII	CAGCTG	2 cut(s)	178, 711
RsaI	GTAC	3 cut(s)	367, 680, 959
RsaNI	GTAC	3 cut(s)	366, 679, 958
RseI	CAYNNNNRTG	2 cut(s)	189, 825
SaqAI	TTAA	1 cut(s)	978
SatI	GCNGC	3 cut(s)	179, 223, 709
Sau3AI	GATC	6 cut(s)	112, 594, 639, 729, 931, 989
Sau96I	GGNCC	2 cut(s)	211, 237
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	3 cut(s)	37, 96, 365
ScrFI	CCNGG	4 cut(s)	459, 695, 763, 1071
SfaNI	GCATC	3 cut(s)	259, 664, 778
SfcI	CTRYAG	4 cut(s)	703, 720, 733, 1011
SinI	GGWCC	2 cut(s)	211, 237
SmiMI	CAYNNNNRTG	2 cut(s)	189, 825
SmlI	CTYRAG	2 cut(s)	503, 659
SmoI	CTYRAG	2 cut(s)	503, 659
Sse9I	AATT	2 cut(s)	290, 341
SsiI	CCGC	4 cut(s)	223, 715, 791, 877
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	457, 693, 761, 1069
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	72, 869
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	354, 939, 992
TasI	AATT	2 cut(s)	290, 341
TatI	WGTACW	3 cut(s)	365, 678, 957
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	378, 994
Tru1I	TTAA	1 cut(s)	978
Tru9I	TTAA	1 cut(s)	978
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	178, 708
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	6 cut(s)	160, 218, 303, 333, 542, 1007
TspGWI	ACGGA	2 cut(s)	55, 156
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	211, 237
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	4 cut(s)	93, 488, 679, 781
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.