Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Reverse (-)

21018445 .. 21022359

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G247400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAATACGATCTCTCCGCCCTACTCACAGACGAACACCACCTAAGTTCTTTTGTCTCATTCTGTTGATAGTTGTGCCTACATGTATATTTGGAATCTACACAAATTACCCGAAAATTTCGTACTTCTTTCGGCCACTTTGGGACAAGCCCCCAACCCCTTTCATACGCCTGCCGCACTACTATGCTGAAAATGTAACCATGGACCATCTTTGCCGCCTTCATGGCTGGTCCCTACGTGCTGAACCCCGCCGTGTTTTCGATGGCATCATCTTTAGCAATGAGTTAGACATGCTCGATATTAGGTGGCATGAGCTTTATCCATATGTCACAAAATTGGTAATACTTGAGGCAAATACCACTTTCACTGGCATCCCGAAGCCTCTTTTCTTTGCTTCAAATCGGAGCAGATTTGCCTTTGCTGAGGAAAAAGTTGTCCACGATATCTTTCCTGGCATAGTTGTACCCCGTGGATCGCGTACGGACCCCTTTGAACTTGAGAAAAAGCAACGTATAGCTATGAATGCTTTACTTCGGCATGCGGGGATTTCCTATGGTGATGTACTGATAATGTCAGATACTGATGAGATCCCAAGCCCACATACTGTGAAATTACTGCAATGGTGTGATGGGATTCCATCTACAATGCATCTTGAGCTGAAGCACTACATGTATTCATTTGAGTTCCCAGTGGACTATAGTAGCTGGCGGGCTACATCCCACATCTACGGACCACGTACCTTTTATCAGCACTCCCGACAAACAAATTATTTATTTTCTGATGCAGGATGGCATTGTAGTTTTTGCTTTCAGCATATTGAAGACTTTGTGTTTAAGATGACTGCTTATAGCCATGCGGACCGTGTGAAGCGGAGAGAGTTTCTGAATTATGCAAGAATTCAAAAGCTCATTTGTCGAGGAGATGATCTTTTTGATATGTTACCTGAAGAGTACTCATTCAAGGAGTTGATTAAGAAGATGGGACCAATACCTCGTTCGACTTCTGCAGTTCATCTTCCTGCTTACTTGATAAAGAATGTAGACAAGTTTAGGTTCCTTCTCCCCGGAGGCTGTATAAGGCCACAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

364

Amino Acids

42.72

Weight (kDa)

9.06

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1041
AccII	CGCG	1 cut(s)	478
AciI	CCGC	8 cut(s)	19, 176, 217, 250, 542, 709, 857, 871
AclWI	GGATC	2 cut(s)	481, 583
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	117, 897
AcuI	CTGAAG	2 cut(s)	680, 966
AfaI	GTAC	6 cut(s)	125, 465, 481, 564, 739, 953
AflIII	ACRYGT	2 cut(s)	83, 669
AgsI	TTSAA	5 cut(s)	399, 494, 821, 902, 961
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	979, 1011
AluBI	AGCT	5 cut(s)	316, 518, 658, 705, 907
AluI	AGCT	5 cut(s)	316, 518, 658, 705, 907
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	481, 583
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	134, 1079
ApoI	RAATTY	2 cut(s)	117, 897
AspS9I	GGNCC	6 cut(s)	205, 231, 484, 731, 859, 983
AsuC2I	CCSGG	1 cut(s)	1065
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	6 cut(s)	205, 231, 484, 731, 859, 983
BbsI	GAAGAC	1 cut(s)	828
BbvCI	CCTCAGC	1 cut(s)	423
BccI	CCATC	6 cut(s)	216, 257, 623, 646, 783, 973
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	1065
BcoDI	GTCTC	1 cut(s)	62
BfmI	CTRYAG	2 cut(s)	697, 1005
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	176, 217
BlsI	GCNGC	2 cut(s)	177, 218
BmcAI	AGTACT	1 cut(s)	953
Bme1390I	CCNGG	2 cut(s)	453, 1065
Bme18I	GGWCC	6 cut(s)	205, 231, 484, 731, 859, 983
BmgT120I	GGNCC	6 cut(s)	205, 231, 484, 731, 859, 983
BmiI	GGNNCC	4 cut(s)	233, 486, 984, 1055
BmrFI	CCNGG	2 cut(s)	453, 1065
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	4 cut(s)	276, 381, 658, 772
BmuI	ACTGGG	1 cut(s)	683
BpiI	GAAGAC	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	3 cut(s)	368, 518, 674
BpuMI	CCSGG	1 cut(s)	1065
BsaAI	YACGTR	2 cut(s)	239, 737
BsaJI	CCNNGG	3 cut(s)	201, 469, 1063
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	373, 689
Bse3DI	GCAATG	2 cut(s)	286, 626
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	201, 469, 1063
BseGI	GGATG	3 cut(s)	372, 716, 794
BseMI	GCAATG	2 cut(s)	286, 626
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	373, 689
BseRI	GAGGAG	1 cut(s)	933
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	136, 1081
BsiSI	CCGG	1 cut(s)	1065
BsiWI	CGTACG	1 cut(s)	479
BslFI	GGGAC	3 cut(s)	158, 217, 996
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	158, 217, 996
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	136, 1081
Bsp143I	GATC	4 cut(s)	11, 473, 588, 925
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	8 cut(s)	19, 176, 217, 250, 542, 709, 857, 871
BspANI	GGCC	2 cut(s)	136, 1081
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	4 cut(s)	233, 486, 984, 1055
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	2 cut(s)	481, 583
BsrDI	GCAATG	2 cut(s)	286, 626
BsrI	ACTGG	2 cut(s)	373, 689
BssECI	CCNNGG	3 cut(s)	201, 469, 1063
BssMI	GATC	4 cut(s)	11, 473, 588, 925
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	607, 863
Bst6I	CTCTTC	1 cut(s)	942
BstBAI	YACGTR	2 cut(s)	239, 737
BstC8I	GCNNGC	4 cut(s)	173, 540, 707, 711
BstDEI	CTNAG	2 cut(s)	45, 423
BstDSI	CCRYGG	2 cut(s)	201, 469
BstF5I	GGATG	3 cut(s)	372, 716, 794
BstFNI	CGCG	1 cut(s)	478
BstKTI	GATC	4 cut(s)	14, 476, 591, 928
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	11, 473, 588, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 524, 655
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	4 cut(s)	87, 295, 542, 673
BstSCI	CCNGG	2 cut(s)	451, 1063
BstSFI	CTRYAG	2 cut(s)	697, 1005
BstUI	CGCG	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	136, 1081
BtgI	CCRYGG	2 cut(s)	201, 469
BtsCI	GGATG	3 cut(s)	372, 716, 794
BtsIMutI	CAGTG	2 cut(s)	366, 696
Cac8I	GCNNGC	4 cut(s)	173, 540, 707, 711
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr13I	GGNCC	6 cut(s)	205, 231, 484, 731, 859, 983
CpoI	CGGWCCG	1 cut(s)	859
Csp6I	GTAC	6 cut(s)	124, 464, 480, 563, 738, 952
CspI	CGGWCCG	1 cut(s)	859
CviAII	CATG	8 cut(s)	84, 202, 224, 292, 311, 539, 670, 854
CviQI	GTAC	6 cut(s)	124, 464, 480, 563, 738, 952
DdeI	CTNAG	2 cut(s)	45, 423
DpnI	GATC	4 cut(s)	13, 475, 590, 927
DpnII	GATC	4 cut(s)	11, 473, 588, 925
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	6 cut(s)	205, 231, 484, 731, 859, 983
Eco57I	CTGAAG	2 cut(s)	680, 966
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	8 cut(s)	87, 205, 227, 295, 314, 542, 673, 857
FaqI	GGGAC	3 cut(s)	158, 217, 996
FatI	CATG	8 cut(s)	83, 201, 223, 291, 310, 538, 669, 853
FauI	CCCGC	3 cut(s)	257, 535, 702
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	2 cut(s)	176, 217
FokI	GGATG	3 cut(s)	359, 703, 801
Fsp4HI	GCNGC	2 cut(s)	176, 217
GluI	GCNGC	2 cut(s)	176, 217
HaeIII	GGCC	2 cut(s)	136, 1081
HapII	CCGG	1 cut(s)	1065
Hin1II	CATG	8 cut(s)	87, 205, 227, 295, 314, 542, 673, 857
HinfI	GANTC	2 cut(s)	96, 634
HpaII	CCGG	1 cut(s)	1065
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	3 cut(s)	439, 694, 1042
Hpy188I	TCNGA	4 cut(s)	405, 577, 781, 885
Hpy188III	TCNNGA	3 cut(s)	376, 653, 756
Hpy8I	GTNNAC	3 cut(s)	439, 694, 1042
HpyAV	CCTTC	2 cut(s)	230, 1067
HpyCH4III	ACNGT	2 cut(s)	607, 863
HpyCH4IV	ACGT	3 cut(s)	238, 511, 736
HpyCH4V	TGCA	5 cut(s)	619, 649, 785, 893, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 524, 655
HpyF3I	CTNAG	2 cut(s)	45, 423
HpySE526I	ACGT	3 cut(s)	238, 511, 736
Hsp92II	CATG	8 cut(s)	87, 205, 227, 295, 314, 542, 673, 857
Kzo9I	GATC	4 cut(s)	11, 473, 588, 925
LmnI	GCTCC	1 cut(s)	405
LweI	GCATC	4 cut(s)	276, 381, 658, 772
MaeII	ACGT	3 cut(s)	238, 511, 736
MaeIII	GTNAC	3 cut(s)	196, 328, 939
MalI	GATC	4 cut(s)	13, 475, 590, 927
MboI	GATC	4 cut(s)	11, 473, 588, 925
MboII	GAAGA	4 cut(s)	833, 959, 988, 1007
MflI	RGATCY	1 cut(s)	588
MluCI	AATT	7 cut(s)	106, 117, 335, 611, 766, 886, 897
MnlI	CCTC	6 cut(s)	343, 393, 418, 911, 1002, 1061
Mph1103I	ATGCAT	1 cut(s)	651
MseI	TTAA	2 cut(s)	834, 972
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	1 cut(s)	1065
MspR9I	CCNGG	2 cut(s)	453, 1065
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	225, 524, 655
NciI	CCSGG	1 cut(s)	1065
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	4 cut(s)	11, 473, 588, 925
NlaIII	CATG	8 cut(s)	87, 205, 227, 295, 314, 542, 673, 857
NlaIV	GGNNCC	4 cut(s)	233, 486, 984, 1055
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	4 cut(s)	87, 295, 542, 673
PaeI	GCATGC	1 cut(s)	542
PciI	ACATGT	2 cut(s)	83, 669
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	96, 634
Pfl23II	CGTACG	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	177, 218
Ppu21I	YACGTR	2 cut(s)	239, 737
PscI	ACATGT	2 cut(s)	83, 669
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspLI	CGTACG	1 cut(s)	479
PspN4I	GGNNCC	4 cut(s)	233, 486, 984, 1055
PspPI	GGNCC	6 cut(s)	205, 231, 484, 731, 859, 983
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	588
RsaI	GTAC	6 cut(s)	125, 465, 481, 564, 739, 953
RsaNI	GTAC	6 cut(s)	124, 464, 480, 563, 738, 952
RseI	CAYNNNNRTG	1 cut(s)	183
Rsr2I	CGGWCCG	1 cut(s)	859
RsrII	CGGWCCG	1 cut(s)	859
SaqAI	TTAA	2 cut(s)	834, 972
SatI	GCNGC	2 cut(s)	176, 217
Sau3AI	GATC	4 cut(s)	11, 473, 588, 925
Sau96I	GGNCC	6 cut(s)	205, 231, 484, 731, 859, 983
ScaI	AGTACT	1 cut(s)	953
ScrFI	CCNGG	2 cut(s)	453, 1065
SfaNI	GCATC	4 cut(s)	276, 381, 658, 772
SfcI	CTRYAG	2 cut(s)	697, 1005
SinI	GGWCC	6 cut(s)	205, 231, 484, 731, 859, 983
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	347, 497, 653
SmoI	CTYRAG	3 cut(s)	347, 497, 653
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	7 cut(s)	106, 117, 335, 611, 766, 886, 897
SsiI	CCGC	8 cut(s)	19, 176, 217, 250, 542, 709, 857, 871
StyD4I	CCNGG	2 cut(s)	451, 1063
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	607, 863
TaiI	ACGT	3 cut(s)	241, 514, 739
TaqI	TCGA	4 cut(s)	261, 297, 916, 998
TasI	AATT	7 cut(s)	106, 117, 335, 611, 766, 886, 897
TatI	WGTACW	2 cut(s)	562, 951
TauI	GCSGC	2 cut(s)	178, 219
TfiI	GAWTC	2 cut(s)	96, 634
Tru1I	TTAA	2 cut(s)	834, 972
Tru9I	TTAA	2 cut(s)	834, 972
TscAI	CASTG	2 cut(s)	373, 696
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	5 cut(s)	154, 212, 536, 666, 1001
TspGWI	ACGGA	2 cut(s)	497, 744
TspRI	CASTG	2 cut(s)	373, 696
VpaK11BI	GGWCC	6 cut(s)	205, 231, 484, 731, 859, 983
XapI	RAATTY	2 cut(s)	117, 897
XceI	RCATGY	4 cut(s)	87, 295, 542, 673
XmiI	GTMKAC	1 cut(s)	1041
ZrmI	AGTACT	1 cut(s)	953
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.