Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Reverse (-)

56770851 .. 56772876

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0478800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCTCGTAATACCTCCGAAGCAAACTTGCAAATTGCACCTGAAAAGCTTGAAGACAATGCCAAGAATTTGAGTGATTTACCTGATGACATTCTTGGCCACATCTTATCCTTCATGGAAACACGAGAAGCAGTTAGAACGAGTACATTGTCGAAACGGTGGAAGTACGTAAGGACATTCACTCCCAACCTCGTCTTCGATGATTTCCGCTTCTGGTTTATAAAAGAAAACCTGTGGAAACATGTTGGGGATTATGTAGCAAGGGAGATCCACCTTCGAGGATTCGTGAGAAGCTTTGGTTTTGAAGTTCGTCATTATGGAATCGTTGCTGCCCTCTTGAGGTCTTGGATCACGGAGCTAGTAATGCGTAATGTTCAAGATGTTTCCTTGTTTCTCAATTCAAGTGATGAACACAATGTGCTACCTGACTGCTTGTTTACTTGCAAATCACTTGTGCATTTTAAATTTAGTATAGGAGGGATCGTTTCCCTCGAACTTCCCTCTACAATATATTTTTCAAATCTCAAAACATTGAGTCTTAGAAATGTTCGATTCTTAAATGAGCACTCGACGAACCAGTTGTTTTCTAGTTGCCCGGTGCTTGAAGATTTAACCCTCAATGACTGCCGTTGGTCGGATTTCCAGCTTATCAATATCTGTGCACCCAAGCTCTTGAGACTGACTATATTCGAACGTGTGCACTTCGGTTATACTAGTCCTCATGGCTGCCGGATCACGGTTTTCGGACCTAACTTGACAGATTTTGTTTATGATGGTGACTTTTTCAACGAGCATTACTTGTACAATGCAACATCGCTTGAGAAGGCATGCATTAGGCAAGGATGTGTGGAACACCACAATCACTTATACCAGCTTCTCCAATGTCTCTCTAGTGTAAAAGATTTAGAACTCGGTCTTGATGATTATGAGGTTCCAAAAGGCGTAGGAGAGCTCTTGGATGATATGCCCATGTTCAAGAACCTAACCCGTTTGGATGTAAATGGCTTTGTTCATGGAAGTTTGGTGCTCAATTCTAACATTGGACTGATGAAGCTGCTGAAGAACTCTCCTCGTCTAGAAGTGCTTAAAGCTTCATGGGTTTTTCGTCTACCCCTTGACCAAGATGATATAAATCCAATGCCGCCATGTTTCCGTTCACATCTAAAGATCATCGAAGTTCATATATCTGATGGAAAAGAGTCATACAATGCACTCAAGAGTCTGTTAAGGAATGCGCATGTCCTGAAGAAGTTAGTTATTTCATTCTGTTGTGACTCAAAGAGAGATAAATTTTGGGAGCGCCGGATATTAAAGCTTCCCAAAATATCAAAAGATTGTAAAGTGATTGTTGAACGATCATACGATGGCGGAGAAGACAATTTTTGTCTATTCCATGATATCAATGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

470

Amino Acids

54.39

Weight (kDa)

6.65

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	24 - 56	2.3e-08	F-box domain
LRR_At5g56370	PF24758	113 - 229	5.6e-14	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	380 - 420	1.1e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	1236
AccI	GTMKAC	1 cut(s)	1108
AciI	CCGC	3 cut(s)	208, 1142, 1368
AclWI	GGATC	4 cut(s)	262, 356, 488, 740
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	67, 464, 1289
AcuI	CTGAAG	2 cut(s)	1079, 1265
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	3 cut(s)	145, 167, 803
AfiI	CCNNNNNNNGG	3 cut(s)	339, 634, 736
AflIII	ACRYGT	2 cut(s)	241, 694
AgsI	TTSAA	9 cut(s)	53, 305, 377, 402, 519, 605, 787, 976, 1352
AhlI	ACTAGT	1 cut(s)	713
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
Alw21I	GWGCWC	5 cut(s)	567, 664, 702, 954, 1029
Alw26I	GTCTC	2 cut(s)	670, 890
Alw44I	GTGCAC	2 cut(s)	660, 698
AlwI	GGATC	4 cut(s)	262, 356, 488, 740
AoxI	GGCC	1 cut(s)	97
ApaLI	GTGCAC	2 cut(s)	660, 698
ApeKI	GCWGC	3 cut(s)	329, 726, 1054
ApoI	RAATTY	3 cut(s)	67, 464, 1289
AspLEI	GCGC	2 cut(s)	1237, 1302
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	788
AsuII	TTCGAA	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	2 cut(s)	664, 702
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	954
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	3 cut(s)	60, 187, 1380
Bbv12I	GWGCWC	5 cut(s)	567, 664, 702, 954, 1029
BbvI	GCAGC	3 cut(s)	316, 713, 1041
BccI	CCATC	3 cut(s)	767, 1184, 1358
BceAI	ACGGC	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	670, 890
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	5 cut(s)	359, 588, 714, 891, 1076
BfoI	RGCGCY	1 cut(s)	1303
BglII	AGATCT	1 cut(s)	1407
BisI	GCNGC	4 cut(s)	330, 727, 1055, 1142
BlsI	GCNGC	4 cut(s)	331, 728, 1056, 1143
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	933
BmrFI	CCNGG	1 cut(s)	596
BpiI	GAAGAC	3 cut(s)	60, 187, 1380
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	4 cut(s)	358, 694, 839, 1199
BpuMI	CCSGG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	1131
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 468, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	339, 634, 736
Bse1I	ACTGG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	1131
BseGI	GGATG	3 cut(s)	848, 964, 1000
BseJI	GATNNNNATC	1 cut(s)	1131
BseLI	CCNNNNNNNGG	3 cut(s)	339, 634, 736
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	1059
BseSI	GKGCMC	2 cut(s)	664, 702
BseXI	GCAGC	3 cut(s)	316, 713, 1041
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	5 cut(s)	567, 664, 702, 954, 1029
BsiSI	CCGG	3 cut(s)	596, 730, 1303
BslI	CCNNNNNNNGG	3 cut(s)	339, 634, 736
BsmAI	GTCTC	2 cut(s)	670, 890
BsmI	GAATGC	1 cut(s)	1237
BsnI	GGCC	1 cut(s)	99
Bsp119I	TTCGAA	1 cut(s)	690
Bsp1286I	GDGCHC	5 cut(s)	567, 664, 702, 954, 1029
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
BspACI	CCGC	3 cut(s)	208, 1142, 1368
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	933
BspPI	GGATC	4 cut(s)	262, 356, 488, 740
BspT104I	TTCGAA	1 cut(s)	690
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	577
BssMI	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	159, 739
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	1 cut(s)	829
BstDEI	CTNAG	1 cut(s)	539
BstF5I	GGATG	3 cut(s)	848, 964, 1000
BstH2I	RGCGCY	1 cut(s)	1303
BstHHI	GCGC	2 cut(s)	1237, 1302
BstKTI	GATC	7 cut(s)	270, 351, 483, 735, 1170, 1358, 1410
BstMAI	GTCTC	2 cut(s)	670, 890
BstMBI	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNSI	RCATGY	3 cut(s)	245, 831, 1241
BstSCI	CCNGG	1 cut(s)	594
BstSLI	GKGCMC	2 cut(s)	664, 702
BstSNI	TACGTA	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	316, 713, 1041
BstV2I	GAAGAC	3 cut(s)	60, 187, 1380
BstX2I	RGATCY	2 cut(s)	267, 1407
BstYI	RGATCY	2 cut(s)	267, 1407
BsuRI	GGCC	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	848, 964, 1000
Cac8I	GCNNGC	1 cut(s)	829
CfoI	GCGC	2 cut(s)	1237, 1302
Cfr13I	GGNCC	1 cut(s)	746
Csp6I	GTAC	3 cut(s)	144, 166, 802
CviQI	GTAC	3 cut(s)	144, 166, 802
DdeI	CTNAG	1 cut(s)	539
DpnI	GATC	7 cut(s)	269, 350, 482, 734, 1169, 1357, 1409
DpnII	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
DraI	TTTAAA	1 cut(s)	463
DraIII	CACNNNGTG	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	1383
Ecl136II	GAGCTC	1 cut(s)	952
Eco105I	TACGTA	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	954
Eco32I	GATATC	1 cut(s)	1399
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	2 cut(s)	1079, 1265
EcoICRI	GAGCTC	1 cut(s)	952
EcoRV	GATATC	1 cut(s)	1399
EcoT22I	ATGCAT	1 cut(s)	833
EcoT38I	GRGCYC	1 cut(s)	954
FblI	GTMKAC	1 cut(s)	1108
Fnu4HI	GCNGC	4 cut(s)	330, 727, 1055, 1142
FokI	GGATG	3 cut(s)	855, 971, 1007
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	4 cut(s)	330, 727, 1055, 1142
FspAI	RTGCGCAY	1 cut(s)	1236
FspBI	CTAG	5 cut(s)	359, 588, 714, 891, 1076
FspI	TGCGCA	1 cut(s)	1236
GlaI	GCGC	2 cut(s)	1236, 1301
GluI	GCNGC	4 cut(s)	330, 727, 1055, 1142
HaeII	RGCGCY	1 cut(s)	1303
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	3 cut(s)	596, 730, 1303
HhaI	GCGC	2 cut(s)	1237, 1302
Hin6I	GCGC	2 cut(s)	1235, 1300
HinP1I	GCGC	2 cut(s)	1235, 1300
HindIII	AAGCTT	4 cut(s)	47, 292, 1089, 1313
HinfI	GANTC	7 cut(s)	282, 321, 535, 552, 1199, 1219, 1274
HpaII	CCGG	3 cut(s)	596, 730, 1303
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	5 cut(s)	438, 662, 700, 1109, 1157
Hpy188I	TCNGA	5 cut(s)	19, 637, 746, 1189, 1412
Hpy188III	TCNNGA	9 cut(s)	286, 337, 377, 673, 917, 976, 1076, 1216, 1243
Hpy8I	GTNNAC	5 cut(s)	438, 662, 700, 1109, 1157
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	121, 284, 817
HpyCH4III	ACNGT	2 cut(s)	159, 739
HpyCH4IV	ACGT	2 cut(s)	168, 694
HpyCH4V	TGCA	9 cut(s)	31, 38, 444, 457, 662, 700, 809, 831, 1211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	539
HpySE526I	ACGT	2 cut(s)	168, 694
HspAI	GCGC	2 cut(s)	1235, 1300
Kzo9I	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
LmnI	GCTCC	2 cut(s)	355, 1297
Lsp1109I	GCAGC	3 cut(s)	316, 713, 1041
MaeI	CTAG	5 cut(s)	359, 588, 714, 891, 1076
MaeII	ACGT	2 cut(s)	168, 694
MaeIII	GTNAC	2 cut(s)	776, 1271
MalI	GATC	7 cut(s)	269, 350, 482, 734, 1169, 1357, 1409
MboI	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
MboII	GAAGA	6 cut(s)	65, 187, 617, 1072, 1258, 1385
MflI	RGATCY	2 cut(s)	267, 1407
MhlI	GDGCHC	5 cut(s)	567, 664, 702, 954, 1029
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	7 cut(s)	33, 67, 397, 464, 1030, 1289, 1378
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	4 cut(s)	544, 1208, 1228, 1268
MmeI	TCCRAC	1 cut(s)	615
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	833
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	6 cut(s)	462, 557, 611, 1086, 1226, 1310
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	3 cut(s)	596, 730, 1303
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	1237
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
NlaIV	GGNNCC	1 cut(s)	933
NmuCI	GTSAC	2 cut(s)	776, 1271
NsbI	TGCGCA	1 cut(s)	1236
NsiI	ATGCAT	1 cut(s)	833
NspI	RCATGY	3 cut(s)	245, 831, 1241
NspV	TTCGAA	1 cut(s)	690
PaeI	GCATGC	1 cut(s)	831
PciI	ACATGT	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PctI	GAATGC	1 cut(s)	1237
PfeI	GAWTC	3 cut(s)	282, 321, 552
PkrI	GCNGC	4 cut(s)	331, 728, 1056, 1143
PleI	GAGTC	4 cut(s)	543, 1207, 1227, 1268
PpsI	GAGTC	4 cut(s)	543, 1207, 1227, 1268
Ppu21I	YACGTR	1 cut(s)	169
PscI	ACATGT	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	954
PspN4I	GGNNCC	1 cut(s)	933
PspPI	GGNCC	1 cut(s)	746
PsuI	RGATCY	2 cut(s)	267, 1407
RsaI	GTAC	3 cut(s)	145, 167, 803
RsaNI	GTAC	3 cut(s)	144, 166, 802
SacI	GAGCTC	1 cut(s)	954
SaqAI	TTAA	6 cut(s)	462, 557, 611, 1086, 1226, 1310
SatI	GCNGC	4 cut(s)	330, 727, 1055, 1142
Sau3AI	GATC	7 cut(s)	267, 348, 480, 732, 1167, 1355, 1407
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	4 cut(s)	544, 1208, 1228, 1268
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	5 cut(s)	567, 664, 702, 954, 1029
SfuI	TTCGAA	1 cut(s)	690
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	4 cut(s)	337, 673, 818, 1214
SmoI	CTYRAG	4 cut(s)	337, 673, 818, 1214
SnaBI	TACGTA	1 cut(s)	169
SpeI	ACTAGT	1 cut(s)	713
SphI	GCATGC	1 cut(s)	831
Sse9I	AATT	7 cut(s)	33, 67, 397, 464, 1030, 1289, 1378
SsiI	CCGC	3 cut(s)	208, 1142, 1368
SspMI	CTAG	5 cut(s)	359, 588, 714, 891, 1076
SstI	GAGCTC	1 cut(s)	954
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	159, 739
TaiI	ACGT	2 cut(s)	171, 697
TaqI	TCGA	8 cut(s)	152, 198, 277, 492, 550, 569, 690, 1173
TaqII	GACCGA	1 cut(s)	902
TasI	AATT	7 cut(s)	33, 67, 397, 464, 1030, 1289, 1378
TatI	WGTACW	2 cut(s)	143, 801
TauI	GCSGC	1 cut(s)	1144
TfiI	GAWTC	3 cut(s)	282, 321, 552
Tru1I	TTAA	6 cut(s)	462, 557, 611, 1086, 1226, 1310
Tru9I	TTAA	6 cut(s)	462, 557, 611, 1086, 1226, 1310
TseFI	GTSAC	2 cut(s)	776, 1271
TseI	GCWGC	3 cut(s)	329, 726, 1054
Tsp45I	GTSAC	2 cut(s)	776, 1271
TspDTI	ATGAA	7 cut(s)	103, 423, 1001, 1064, 1083, 1169, 1251
TspGWI	ACGGA	2 cut(s)	368, 1142
VneI	GTGCAC	2 cut(s)	660, 698
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	3 cut(s)	67, 464, 1289
XbaI	TCTAGA	1 cut(s)	1075
XceI	RCATGY	3 cut(s)	245, 831, 1241
XmiI	GTMKAC	1 cut(s)	1108
XspI	CTAG	5 cut(s)	359, 588, 714, 891, 1076
Zsp2I	ATGCAT	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.