Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011645

Physical Location & Seq

Genomic Coordinates Forward (+)

6018558 .. 6023863

Gene Structure 5306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGAGAGGGAAGATAGTTATACGAAGGATCGATAACTCTACAAGTAGACAAGTGACTTTCTCCAAGAGAAGGAGTGGTTTGCTTAAGAAAGCTAAAGAGTTATCGATCCTTTGTGATGCAGAAGTTGGTGTTATCATATTCTCTAGCACCGGAAAGCTCTACGACTACGCAAGCAATTCAAGTATGAAAACAATCATTGAGCGGTACAACAGAGTAAAAGAGGAGCAGCATCAACTTCTGAATCATGCCTCAGAGATAAAGTTTTGGCAAAGAGAGGTTGCAAGTTTGCAGCAGCAGCTCCAATATCTACAAGAATGCCACAGGAAACTAGTGGGAGAGGAACTTTCTGGAATGAATGCTAACGACCTACAAAACCTTGAAGACCAGCTAGTAACAAGTCTAAAAGGTGTTCGTCTCAAAAAGGATCAACTTATGACAAATGAAATCAGAGAACTTAATCGTAAGGGACAAATCATCCAAAAAGAGAATCACGAGCTACAAAATATTGTAGATATAATGCGTAAGGAAAATATTAAATTGCAAAAGAAGGTTCATGGAAGAACAAATGCGATTGAAGGCAATTCAAGTGTAGATCCAATAAGCAATGGAACCACAACATATGCACCACCGCAACTTCAACTCATACAACTACAACCAGCTCCTAGAGAAAAATCAATCAGACTAGGGCTACAACTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007584 GO:0008134 GO:0008150 GO:0009605 GO:0009791 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031667 GO:0032501 GO:0032502 GO:0042221 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0080090 GO:0090696 GO:0099402 GO:0140110 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

234

Amino Acids

26.8

Weight (kDa)

9.69

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 170	8.7e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14210 AT2G14210
fragaria_vesca	FvH4_2g11352
malus_domestica	MD05G1049500.v1.1 MD10G1056100.v1.1 MD10G1056200.v1.1
prunus_persica	Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1
pyrus_communis	pycom05g04090 pycom10g04310 pycom10g04320
rosa_chinensis	RchiOBHm_Chr6g0269991
rosa_laevigata	RLG00000013823
rosa_multiflora	Rmu_sc0000893.1_g000023
rosa_roxburghii	Rroxscaffold_7G00198220
rosa_rugosa	Rorug06G0051800
rosa_samantha	Rh6AG170900 Rh6DG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	2 cut(s)	205, 632
AclWI	GGATC	4 cut(s)	38, 103, 435, 590
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	183, 383, 578, 588, 641
AhlI	ACTAGT	1 cut(s)	331
AluBI	AGCT	6 cut(s)	95, 160, 301, 391, 499, 662
AluI	AGCT	6 cut(s)	95, 160, 301, 391, 499, 662
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	4 cut(s)	38, 103, 435, 590
ApeKI	GCWGC	4 cut(s)	229, 292, 295, 298
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	241, 304, 307, 310
BcoDI	GTCTC	1 cut(s)	422
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	6 cut(s)	147, 332, 392, 666, 686, 703
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	4 cut(s)	230, 293, 296, 299
BlsI	GCNGC	4 cut(s)	231, 294, 297, 300
BmiI	GGNNCC	1 cut(s)	613
BmsI	GCATC	2 cut(s)	109, 241
BpiI	GAAGAC	1 cut(s)	390
Bsa29I	ATCGAT	2 cut(s)	33, 107
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	613
BseCI	ATCGAT	2 cut(s)	33, 107
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	4 cut(s)	241, 304, 307, 310
BshVI	ATCGAT	2 cut(s)	33, 107
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	2 cut(s)	323, 364
Bsp143I	GATC	4 cut(s)	30, 108, 427, 595
BspACI	CCGC	2 cut(s)	205, 632
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	2 cut(s)	33, 107
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	4 cut(s)	38, 103, 435, 590
BspTI	CTTAAG	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	613
BssMI	GATC	4 cut(s)	30, 108, 427, 595
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	477
BstKTI	GATC	4 cut(s)	33, 111, 430, 598
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	30, 108, 427, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstV1I	GCAGC	4 cut(s)	241, 304, 307, 310
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu15I	ATCGAT	2 cut(s)	33, 107
BsuTUI	ATCGAT	2 cut(s)	33, 107
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	175
ClaI	ATCGAT	2 cut(s)	33, 107
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	248, 557
CviJI	RGCY	7 cut(s)	95, 160, 301, 391, 499, 662, 691
CviKI_1	RGCY	7 cut(s)	95, 160, 301, 391, 499, 662, 691
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	4 cut(s)	32, 110, 429, 597
DpnII	GATC	4 cut(s)	30, 108, 427, 595
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	2 cut(s)	251, 560
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	2 cut(s)	247, 556
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	4 cut(s)	230, 293, 296, 299
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	4 cut(s)	230, 293, 296, 299
FspBI	CTAG	6 cut(s)	147, 332, 392, 666, 686, 703
GluI	GCNGC	4 cut(s)	230, 293, 296, 299
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	251, 560
HinfI	GANTC	2 cut(s)	244, 490
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	4 cut(s)	243, 256, 452, 683
Hpy188III	TCNNGA	2 cut(s)	351, 494
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	21, 66, 544, 572
HpyCH4V	TGCA	5 cut(s)	122, 284, 292, 544, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	251, 560
Kzo9I	GATC	4 cut(s)	30, 108, 427, 595
LmnI	GCTCC	3 cut(s)	226, 306, 667
LpnPI	CCDG	5 cut(s)	166, 310, 336, 401, 672
Lsp1109I	GCAGC	4 cut(s)	241, 304, 307, 310
LweI	GCATC	2 cut(s)	109, 241
MaeI	CTAG	6 cut(s)	147, 332, 392, 666, 686, 703
MaeIII	GTNAC	2 cut(s)	55, 394
MalI	GATC	4 cut(s)	32, 110, 429, 597
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	4 cut(s)	30, 108, 427, 595
MboII	GAAGA	3 cut(s)	25, 395, 573
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	3 cut(s)	178, 539, 583
MnlI	CCTC	4 cut(s)	217, 262, 271, 334
MseI	TTAA	3 cut(s)	87, 459, 537
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	2 cut(s)	323, 364
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	4 cut(s)	30, 108, 427, 595
NlaIII	CATG	2 cut(s)	251, 560
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	55
PctI	GAATGC	2 cut(s)	323, 364
PfeI	GAWTC	2 cut(s)	244, 490
PkrI	GCNGC	4 cut(s)	231, 294, 297, 300
PspN4I	GGNNCC	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	87, 459, 537
SatI	GCNGC	4 cut(s)	230, 293, 296, 299
Sau3AI	GATC	4 cut(s)	30, 108, 427, 595
SfaNI	GCATC	2 cut(s)	109, 241
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	3 cut(s)	178, 539, 583
SsiI	CCGC	2 cut(s)	205, 632
SspI	AATATT	2 cut(s)	508, 535
SspMI	CTAG	6 cut(s)	147, 332, 392, 666, 686, 703
TaqI	TCGA	2 cut(s)	33, 107
TasI	AATT	3 cut(s)	178, 539, 583
TfiI	GAWTC	2 cut(s)	244, 490
Tru1I	TTAA	3 cut(s)	87, 459, 537
Tru9I	TTAA	3 cut(s)	87, 459, 537
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	229, 292, 295, 298
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	203, 371, 459, 545
Vha464I	CTTAAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	6 cut(s)	147, 332, 392, 666, 686, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.