Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011645

Physical Location & Seq

Genomic Coordinates Forward (+)

8592992 .. 8594052

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1049500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTAACATTTTCTATTGCTCCAATAAATGCTCATTTACAAGCTTGAGGCAACAATTGCGGTACTTGGAAGAATGTCACAGGCAGTTAATGGGGGAAGAACTTTCTGGTTTGAGTGCCAAAGATCTACAGAATTTGGAAAGCCAGCTGGAGATGAGTTTGAAAGGTGTCCGGACAAAAAAGAACCAGATATTTGATGATGAAATAAAAGAATTGAACCAGAAGACAAATTTCATACATCAAGAGAATATAGAACTCTATAAGAAGCTAGACCTCAAAGGTAAAGAGAATGAGGAACTGCAAAAGAAGGTATTGTTTATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

109

Amino Acids

12.82

Weight (kDa)

6.83

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	12 - 90	2.1e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14210 AT2G14210
fragaria_vesca	FvH4_2g11352
malus_domestica	MD05G1049500.v1.1 MD10G1056100.v1.1 MD10G1056200.v1.1
prunus_persica	Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1
pyrus_communis	pycom05g04090 pycom10g04310 pycom10g04320
rosa_chinensis	RchiOBHm_Chr6g0269991
rosa_laevigata	RLG00000013823
rosa_multiflora	Rmu_sc0000893.1_g000023
rosa_roxburghii	Rroxscaffold_7G00198220
rosa_rugosa	Rorug06G0051800
rosa_samantha	Rh6AG170900 Rh6DG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	133, 229
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	163, 217
AluBI	AGCT	3 cut(s)	45, 148, 268
AluI	AGCT	3 cut(s)	45, 148, 268
Aor13HI	TCCGGA	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	133, 229
BbsI	GAAGAC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	171
BssMI	GATC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	5 cut(s)	5, 45, 144, 148, 268
CviKI_1	RGCY	5 cut(s)	5, 45, 144, 148, 268
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
FaiI	YATR	4 cut(s)	236, 251, 261, 320
FspBI	CTAG	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	170
HapII	CCGG	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	43
HpaII	CCGG	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	172, 242
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	7 cut(s)	67, 93, 134, 158, 185, 200, 233
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	83, 110, 235
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	4 cut(s)	56, 133, 212, 229
MnlI	CCTC	3 cut(s)	42, 284, 286
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	2 cut(s)	89, 325
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	172
MunI	CAATTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	89, 325
Sau3AI	GATC	1 cut(s)	124
SetI	ASST	7 cut(s)	47, 150, 169, 270, 276, 283, 312
SfcI	CTRYAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	4 cut(s)	56, 133, 212, 229
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	269
TasI	AATT	4 cut(s)	56, 133, 212, 229
Tru1I	TTAA	2 cut(s)	89, 325
Tru9I	TTAA	2 cut(s)	89, 325
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	216, 223
XapI	RAATTY	2 cut(s)	133, 229
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.