Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011645

Physical Location & Seq

Genomic Coordinates Forward (+)

4741991 .. 4764514

Gene Structure 22524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGGAGAGGAAAGATTGTGATTAGAAGGATTGACAATTCAACAAGCAGGCAAGTGACCTTCTCGAAGAGAAAAAGTGGGTTGCTTAAGAAGGCTAAGGAGCTATCAATCCTTTGTGATGCTGAGGTTGGATTGATTGTCTTCTCTAGCACCGGCAGGCTTTACGATTATGCTAGCACTAGCAACCCAACTTCAGTAGCAAACATCAAGACGGTTATCGATCGGTTCAGCAAACTAAGAGAGGAGCATCGTCAACTGCTGAATCCTGCTTCAGAAGTCAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAATTGCGGCACTTGGAAGAATGCCACAGGGGAAAAACATGGCAGTTAATGGGGCAAGAACTTTCTGGTTTGAAAGCCAAAGATCTACAAAATTTGGAAGGACAGCTGGAGACGAGTTTGAAAGGTGTCCGGACAAAAAAGAACCAGATATTTGATGATGAAATAAAAGAACTGAACCAGAAGGGAAATTTGATACATCAAGAGAATATAGAACTGTATAACAAGCTAGACCTCATAGGTAAAGAGAATGAGGGACTGCAAAAGAAGATTTACGAAGCAAGGGATGTGAATCGAGGAAACAAAACTTTGCAGCCTCCATATAGCATCAGTAATGCACATGATTTGCACGCACCCATCCATCTGCAGCTAAGCCAGCCACATATTCAAACTCAGCCTGGGCCTGGGCTTAAGAAAGATGAAGTCCCAGCAAAAGCAATCAAATTAGGGTATCTCCTAAAGACTATTACAACTGCATTAGCAAAGTTGCTTCACGGCTGTGGATGGCTATGTCATAATGCAGAAAATTGCACCACAGTGAAACCCAATCTTCTAAGATGGAGAAACGGTAAAGTAACAGCCTTGATTATTTATGTGGATGATATGATAAGAACAGGTGATGATTCAGATGAGATTGTCAAACTGGAGAAGAACATTTCTACCGAGTGTGAGATGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

332

Amino Acids

37.59

Weight (kDa)

9.38

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	90 - 181	5.8e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14210 AT2G14210
fragaria_vesca	FvH4_2g11352
malus_domestica	MD05G1049500.v1.1 MD10G1056100.v1.1 MD10G1056200.v1.1
prunus_persica	Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1
pyrus_communis	pycom05g04090 pycom10g04310 pycom10g04320
rosa_chinensis	RchiOBHm_Chr6g0269991
rosa_laevigata	RLG00000013823
rosa_multiflora	Rmu_sc0000893.1_g000023
rosa_roxburghii	Rroxscaffold_7G00198220
rosa_rugosa	Rorug06G0051800
rosa_samantha	Rh6AG170900 Rh6DG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	406, 502
AcuI	CTGAAG	2 cut(s)	177, 255
AfiI	CCNNNNNNNGG	1 cut(s)	716
AflII	CTTAAG	2 cut(s)	86, 722
AgsI	TTSAA	4 cut(s)	42, 388, 436, 701
AjnI	CCWGG	2 cut(s)	709, 715
AleI	CACNNNNGTG	2 cut(s)	810, 848
AluBI	AGCT	5 cut(s)	103, 306, 421, 541, 682
AluI	AGCT	5 cut(s)	103, 306, 421, 541, 682
Alw26I	GTCTC	2 cut(s)	304, 419
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	3 cut(s)	299, 625, 679
ApoI	RAATTY	2 cut(s)	406, 502
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	941
AsuNHI	GCTAGC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	311, 637, 691
BccI	CCATC	4 cut(s)	677, 681, 810, 864
BceAI	ACGGC	1 cut(s)	823
BciT130I	CCWGG	2 cut(s)	711, 717
BcoDI	GTCTC	2 cut(s)	304, 419
BfaI	CTAG	4 cut(s)	147, 174, 180, 542
BfmI	CTRYAG	1 cut(s)	677
BfrI	CTTAAG	2 cut(s)	86, 722
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	4 cut(s)	300, 323, 626, 680
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	4 cut(s)	301, 324, 627, 681
Bme1390I	CCNGG	2 cut(s)	711, 717
BmgT120I	GGNCC	1 cut(s)	713
BmrFI	CCNGG	2 cut(s)	711, 717
BmsI	GCATC	3 cut(s)	109, 256, 648
BmtI	GCTAGC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	443, 977
Bpu10I	CCTNAGC	2 cut(s)	96, 123
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	328
Bsa29I	ATCGAT	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	710, 716
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	960
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	711, 717
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	710, 716
BseGI	GGATG	4 cut(s)	604, 669, 821, 916
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseMII	CTCAG	2 cut(s)	114, 719
BseNI	ACTGG	1 cut(s)	960
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	311, 637, 691
BseYI	CCCAGC	1 cut(s)	739
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	715
BshVI	ATCGAT	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	153, 445
BslFI	GGGAC	2 cut(s)	582, 722
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	2 cut(s)	304, 419
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	582, 722
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	715
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	220, 397
Bsp1720I	GCTNAGC	1 cut(s)	683
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	2 cut(s)	115, 718
BspDI	ATCGAT	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	681
BspOI	GCTAGC	1 cut(s)	177
BspTI	CTTAAG	2 cut(s)	86, 722
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	960
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	710, 716
BssMI	GATC	2 cut(s)	220, 397
Bst2UI	CCWGG	2 cut(s)	711, 717
Bst4CI	ACNGT	4 cut(s)	214, 531, 850, 881
Bst6I	CTCTTC	2 cut(s)	62, 983
BstAFI	CTTAAG	2 cut(s)	86, 722
BstC8I	GCNNGC	6 cut(s)	50, 158, 175, 304, 663, 689
BstDEI	CTNAG	6 cut(s)	96, 123, 236, 683, 705, 866
BstF5I	GGATG	4 cut(s)	604, 669, 821, 916
BstKTI	GATC	2 cut(s)	223, 400
BstMAI	GTCTC	2 cut(s)	304, 419
BstMBI	GATC	2 cut(s)	220, 397
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	688
BstNI	CCWGG	2 cut(s)	711, 717
BstSCI	CCNGG	2 cut(s)	709, 715
BstSFI	CTRYAG	1 cut(s)	677
BstV1I	GCAGC	3 cut(s)	311, 637, 691
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	715
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	604, 669, 821, 916
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	6 cut(s)	50, 158, 175, 304, 663, 689
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	219
CviAII	CATG	2 cut(s)	354, 653
DdeI	CTNAG	6 cut(s)	96, 123, 236, 683, 705, 866
DpnI	GATC	2 cut(s)	222, 399
DpnII	GATC	2 cut(s)	220, 397
Eam1104I	CTCTTC	2 cut(s)	62, 983
EarI	CTCTTC	2 cut(s)	62, 983
Eco57I	CTGAAG	2 cut(s)	177, 255
EcoRII	CCWGG	2 cut(s)	709, 715
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	2 cut(s)	357, 656
FaqI	GGGAC	2 cut(s)	582, 722
FatI	CATG	2 cut(s)	353, 652
Fnu4HI	GCNGC	4 cut(s)	300, 323, 626, 680
FokI	GGATG	4 cut(s)	611, 656, 828, 923
Fsp4HI	GCNGC	4 cut(s)	300, 323, 626, 680
FspBI	CTAG	4 cut(s)	147, 174, 180, 542
GluI	GCNGC	4 cut(s)	300, 323, 626, 680
GsaI	CCCAGC	1 cut(s)	743
GsuI	CTGGAG	2 cut(s)	443, 977
HaeIII	GGCC	1 cut(s)	715
HapII	CCGG	2 cut(s)	153, 445
Hin1II	CATG	2 cut(s)	357, 656
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	3 cut(s)	262, 604, 935
HpaII	CCGG	2 cut(s)	153, 445
HphI	GGTGA	1 cut(s)	941
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	274, 940
Hpy188III	TCNNGA	4 cut(s)	64, 208, 445, 515
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	5 cut(s)	21, 70, 85, 407, 490
HpyCH4III	ACNGT	4 cut(s)	214, 531, 850, 881
HpyCH4V	TGCA	8 cut(s)	574, 625, 650, 661, 679, 788, 833, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	688
HpyF3I	CTNAG	6 cut(s)	96, 123, 236, 683, 705, 866
Hsp92II	CATG	2 cut(s)	357, 656
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	220, 397
LmnI	GCTCC	2 cut(s)	100, 244
Lsp1109I	GCAGC	3 cut(s)	311, 637, 691
LweI	GCATC	3 cut(s)	109, 256, 648
MaeI	CTAG	4 cut(s)	147, 174, 180, 542
MaeIII	GTNAC	2 cut(s)	55, 886
MalI	GATC	2 cut(s)	222, 399
MboI	GATC	2 cut(s)	220, 397
MboII	GAAGA	6 cut(s)	79, 133, 344, 592, 854, 973
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	6 cut(s)	37, 317, 406, 502, 755, 838
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	8 cut(s)	118, 235, 289, 557, 559, 602, 639, 984
MroI	TCCGGA	1 cut(s)	444
MseI	TTAA	3 cut(s)	87, 362, 723
MslI	CAYNNNNRTG	2 cut(s)	810, 848
MspA1I	CMGCKG	1 cut(s)	421
MspCI	CTTAAG	2 cut(s)	86, 722
MspI	CCGG	2 cut(s)	153, 445
MspR9I	CCNGG	2 cut(s)	711, 717
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	711, 717
MwoI	GCNNNNNNNGC	1 cut(s)	688
NdeII	GATC	2 cut(s)	220, 397
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	357, 656
NmuCI	GTSAC	1 cut(s)	55
OliI	CACNNNNGTG	2 cut(s)	810, 848
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	262, 604, 935
PkrI	GCNGC	4 cut(s)	301, 324, 627, 681
Ple19I	CGATCG	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	709, 715
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	2 cut(s)	709, 715
PspPI	GGNCC	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	397
PvuI	CGATCG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	421
RseI	CAYNNNNRTG	2 cut(s)	810, 848
SaqAI	TTAA	3 cut(s)	87, 362, 723
SatI	GCNGC	4 cut(s)	300, 323, 626, 680
Sau3AI	GATC	2 cut(s)	220, 397
Sau96I	GGNCC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	711, 717
SfaNI	GCATC	3 cut(s)	109, 256, 648
SfcI	CTRYAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	2 cut(s)	810, 848
SmlI	CTYRAG	3 cut(s)	86, 307, 722
SmoI	CTYRAG	3 cut(s)	86, 307, 722
Sse9I	AATT	6 cut(s)	37, 317, 406, 502, 755, 838
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	4 cut(s)	147, 174, 180, 542
StyD4I	CCNGG	2 cut(s)	709, 715
TaaI	ACNGT	4 cut(s)	214, 531, 850, 881
TaqI	TCGA	3 cut(s)	65, 219, 607
TasI	AATT	6 cut(s)	37, 317, 406, 502, 755, 838
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	3 cut(s)	262, 604, 935
Tru1I	TTAA	3 cut(s)	87, 362, 723
Tru9I	TTAA	3 cut(s)	87, 362, 723
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	299, 625, 679
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	489, 747
TspRI	CASTG	1 cut(s)	855
Vha464I	CTTAAG	2 cut(s)	86, 722
XapI	RAATTY	2 cut(s)	406, 502
XspI	CTAG	4 cut(s)	147, 174, 180, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.