Prupe.8G073700_v2.0.a1
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011645
Physical Location & Seq
Forward (+)
10736999 .. 10752290
15292 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G073700.1

Sequence Viewer

Length: 738 bp
ATGGGGAGAGGCAAGATTGTGATTCGGAGGATTGACAACTCCACCAGTAGGCAAGTGACGTTTTCGAAGCGAAGGAATGGGTTGCTTAAGAAGGCTAAGGAGCTATCAATCCTTTGTGATGCTGAGGTTGGACTGATCATCTTCTCTAGCACCGGCAGGCTTTACGATTATGCTAGCACTAGCATGAAATCGGTAATCGATCGTTTTAACAAACTTAAGGAGGAACATCATCAGCTGTTGAATCCTGCTTCAGAAGTCAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAATTGCAGTACTTACAAGAATGCCACAGGCAGTTAATGGGTGAAGAACTTTCTGGTTTGAGTGCCAAAGACCTACAGAGCCTGGAAAACCAACTGGAGACAAGTTTGAAAGGTGTCCGGATGAAAAAGGACCAGATATTAAATGATGAAATAAAAGAACTGAACCAGAAGGGAAATCTCATACAGCAAGAGAATATGGAACTGTATAAGAAGCTAGACCTCGTAGGTAAAGAGAATGCGGAACTGCTACAGAAGGTTTATGGAGCAAGGGGTGTGAATAAAGAAAACAAAAGTTCCCAACCTGCATATACCATCACTAATGGATATGATTTGCAAACACCCATCCATCTGCAGCTAAGCCAGCCACAGAATCAAACTCAGCCTCGGCCTCAGAACAATGAAATACCAGCAAAAGGAATCAAATTAGGATTACAACTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

246

Amino Acids

28.01

Weight (kDa)

9.44

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 48, 707
AflII CTTAAG 2 cut(s) 86, 215
AgsI TTSAA 2 cut(s) 241, 403
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 5 cut(s) 103, 235, 285, 508, 649
AluI AGCT 5 cut(s) 103, 235, 285, 508, 649
Alw26I GTCTC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 2 cut(s) 278, 646
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 65
AsuNHI GCTAGC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 424
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 290, 658
BccI CCATC 3 cut(s) 614, 644, 648
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 4 cut(s) 147, 174, 180, 509
BfmI CTRYAG 3 cut(s) 368, 542, 644
BfrI CTTAAG 2 cut(s) 86, 215
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 2 cut(s) 279, 647
BlpI GCTNAGC 1 cut(s) 650
BlsI GCNGC 2 cut(s) 280, 648
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 109
BmtI GCTAGC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 2 cut(s) 96, 123
Bpu1102I GCTNAGC 1 cut(s) 650
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 677
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 707
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 45, 393
BseAI TCCGGA 1 cut(s) 411
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 2 cut(s) 420, 636
BseLI CCNNNNNNNGG 2 cut(s) 48, 707
BseMII CTCAG 3 cut(s) 114, 686, 698
BseNI ACTGG 2 cut(s) 45, 393
BseXI GCAGC 2 cut(s) 290, 658
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 682
BshVI ATCGAT 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 153, 412
BslI CCNNNNNNNGG 2 cut(s) 48, 707
BsmAI GTCTC 1 cut(s) 386
BsmI GAATGC 2 cut(s) 320, 535
BsnI GGCC 1 cut(s) 682
Bsp119I TTCGAA 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 2 cut(s) 135, 199
Bsp1720I GCTNAGC 1 cut(s) 650
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 682
BspCNI CTCAG 3 cut(s) 115, 685, 697
BspDI ATCGAT 1 cut(s) 198
BspEI TCCGGA 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 648
BspMI ACCTGC 1 cut(s) 604
BspOI GCTAGC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 65
BspTI CTTAAG 2 cut(s) 86, 215
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 45, 393
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 2 cut(s) 135, 199
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 498
BstAFI CTTAAG 2 cut(s) 86, 215
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 4 cut(s) 158, 175, 283, 656
BstDEI CTNAG 5 cut(s) 96, 123, 650, 672, 684
BstF5I GGATG 2 cut(s) 420, 636
BstKTI GATC 2 cut(s) 138, 202
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 2 cut(s) 135, 199
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 298, 655
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 3 cut(s) 368, 542, 644
BstV1I GCAGC 2 cut(s) 290, 658
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 1 cut(s) 682
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 2 cut(s) 420, 636
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 4 cut(s) 158, 175, 283, 656
CaiI CAGNNNCTG 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 424
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 184
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 5 cut(s) 96, 123, 650, 672, 684
DpnI GATC 2 cut(s) 137, 201
DpnII GATC 2 cut(s) 135, 199
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 187
FaiI YATR 9 cut(s) 171, 185, 476, 491, 501, 555, 601, 603, 621
FatI CATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 279, 647
FokI GGATG 2 cut(s) 427, 623
Fsp4HI GCNGC 2 cut(s) 279, 647
FspBI CTAG 4 cut(s) 147, 174, 180, 509
GluI GCNGC 2 cut(s) 279, 647
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 682
HapII CCGG 2 cut(s) 153, 412
Hin1II CATG 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 4 cut(s) 22, 241, 664, 711
HpaII CCGG 2 cut(s) 153, 412
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 27, 253, 687
Hpy188III TCNNGA 1 cut(s) 412
HpyAV CCTTC 4 cut(s) 66, 85, 457, 541
HpyCH4III ACNGT 1 cut(s) 498
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 5 cut(s) 301, 599, 628, 646, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 655
HpyF3I CTNAG 5 cut(s) 96, 123, 650, 672, 684
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 187
Kpn2I TCCGGA 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 2 cut(s) 135, 199
LmnI GCTCC 2 cut(s) 100, 557
Lsp1109I GCAGC 2 cut(s) 290, 658
LweI GCATC 1 cut(s) 109
MaeI CTAG 4 cut(s) 147, 174, 180, 509
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 137, 201
MboI GATC 2 cut(s) 135, 199
MboII GAAGA 2 cut(s) 133, 350
MfeI CAATTG 1 cut(s) 296
MluCI AATT 2 cut(s) 296, 716
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 8 cut(s) 21, 118, 214, 268, 282, 524, 687, 693
MroI TCCGGA 1 cut(s) 411
MseI TTAA 5 cut(s) 87, 207, 216, 329, 434
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 235
MspCI CTTAAG 2 cut(s) 86, 215
MspI CCGG 2 cut(s) 153, 412
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 1 cut(s) 296
Mva1269I GAATGC 2 cut(s) 320, 535
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 298, 655
NdeII GATC 2 cut(s) 135, 199
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 1 cut(s) 55
NspV TTCGAA 1 cut(s) 65
PctI GAATGC 2 cut(s) 320, 535
PfeI GAWTC 4 cut(s) 22, 241, 664, 711
PkrI GCNGC 2 cut(s) 280, 648
Ple19I CGATCG 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspPI GGNCC 1 cut(s) 424
PstI CTGCAG 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 376
PvuI CGATCG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 5 cut(s) 87, 207, 216, 329, 434
SatI GCNGC 2 cut(s) 279, 647
Sau3AI GATC 2 cut(s) 135, 199
Sau96I GGNCC 1 cut(s) 424
ScaI AGTACT 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 3 cut(s) 368, 542, 644
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 86, 215, 286
SmoI CTYRAG 3 cut(s) 86, 215, 286
Sse9I AATT 2 cut(s) 296, 716
SsiI CCGC 1 cut(s) 533
SspMI CTAG 4 cut(s) 147, 174, 180, 509
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 498
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 65, 198
TasI AATT 2 cut(s) 296, 716
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 4 cut(s) 22, 241, 664, 711
Tru1I TTAA 5 cut(s) 87, 207, 216, 329, 434
Tru9I TTAA 5 cut(s) 87, 207, 216, 329, 434
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 278, 646
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 200, 431, 456, 708
Vha464I CTTAAG 2 cut(s) 86, 215
VpaK11BI GGWCC 1 cut(s) 424
XspI CTAG 4 cut(s) 147, 174, 180, 509
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.