Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000893.1

Orthogroup ID

OG0011645

Physical Location & Seq

Genomic Coordinates Reverse (-)

144181 .. 146408

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000893.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgccacgccagcaagatgacggagcttttgatggaaagttgacggcaatgactaattggtacttgcaagaatgccacaggcaattgatgggtgaagaactatctggtttgagcatcaaagatctacagaacctggaaagcaaactggagatgagtttgaaaggtgtccggttgaaaaaggaccagatattaaatgaagaaataaaagacctgagccagaagggaaatctcatacatcaagagaacatagaactgtataagaagctagacgtcataggtaaagagaatgtggaactccaaagaaaggcctatggagcaaggaatgtgagtgaagaaaacgaaagctccgaaccttcgtttaccattactaatggatatcaattgcatgcacccatccatctgcagctaagccagccacagaatcaaactgagcctcagcctcagaacaatgtaccagcaaatgcactcaaactaggattgcatctgcacactagcacggttgttccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

169

Amino Acids

19.17

Weight (kDa)

5.68

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14210 AT2G14210
fragaria_vesca	FvH4_2g11352
malus_domestica	MD05G1049500.v1.1 MD10G1056100.v1.1 MD10G1056200.v1.1
prunus_persica	Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1 Prupe.8G073700_v2.0.a1
pyrus_communis	pycom05g04090 pycom10g04310 pycom10g04320
rosa_chinensis	RchiOBHm_Chr6g0269991
rosa_laevigata	RLG00000013823
rosa_multiflora	Rmu_sc0000893.1_g000023
rosa_roxburghii	Rroxscaffold_7G00198220
rosa_rugosa	Rorug06G0051800
rosa_samantha	Rh6AG170900 Rh6DG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	62, 453
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	160, 175
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	26, 265, 345, 406
AluI	AGCT	4 cut(s)	26, 265, 345, 406
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	403
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	26, 82, 401, 405
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	134
BfaI	CTAG	3 cut(s)	266, 473, 492
BfmI	CTRYAG	2 cut(s)	125, 401
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	404
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	123, 490
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	2 cut(s)	212, 435
Bpu1102I	GCTNAGC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	4 cut(s)	203, 420, 449, 455
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	4 cut(s)	204, 421, 448, 454
BspMAI	CTGCAG	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	255, 499
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	11, 387, 413
BstDEI	CTNAG	5 cut(s)	212, 407, 429, 435, 441
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 314, 412
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	2 cut(s)	125, 401
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	393
Cac8I	GCNNGC	3 cut(s)	11, 387, 413
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	61, 452
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	2 cut(s)	61, 452
DdeI	CTNAG	5 cut(s)	212, 407, 429, 435, 441
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	377
FaeI	CATG	1 cut(s)	389
FaiI	YATR	6 cut(s)	233, 248, 258, 275, 312, 387
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	3 cut(s)	266, 473, 492
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	42, 360
Hpy188I	TCNGA	2 cut(s)	349, 444
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	2 cut(s)	42, 360
HpyAV	CCTTC	2 cut(s)	214, 363
HpyCH4III	ACNGT	2 cut(s)	255, 499
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	7 cut(s)	67, 385, 389, 403, 464, 481, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 314, 412
HpyF3I	CTNAG	5 cut(s)	212, 407, 429, 435, 441
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	3 cut(s)	23, 314, 350
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	123, 490
MaeI	CTAG	3 cut(s)	266, 473, 492
MaeII	ACGT	1 cut(s)	270
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	107, 209, 344
MfeI	CAATTG	2 cut(s)	83, 380
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	3 cut(s)	55, 83, 380
MnlI	CCTC	2 cut(s)	444, 450
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	2 cut(s)	83, 380
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	10, 314, 412
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	389
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 503
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	62, 453
RsaNI	GTAC	2 cut(s)	61, 452
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	123, 490
SfcI	CTRYAG	2 cut(s)	125, 401
SinI	GGWCC	1 cut(s)	181
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	55, 83, 380
SseBI	AGGCCT	1 cut(s)	308
SspMI	CTAG	3 cut(s)	266, 473, 492
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	255, 499
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	55, 83, 380
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	2 cut(s)	36, 495
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	3 cut(s)	266, 473, 492
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.