Rorug06G0051800
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011645
Physical Location & Seq
Reverse (-)
7310588 .. 7311052
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0051800.1

Sequence Viewer

Length: 465 bp
ATGCAAGCTCAACTGCTACCAACCGTCCAATTTTCAAGCCTCTGGGCTTATCACCTTTGCGGGCGAATGCCCCTAGCTTTTATCCCCGTTGCTTGGGAGCCCCCTGATTCTCCATGGGTGAAGGCTATTACAGATGGGTCCTTCCGGAACTTAAATCAAGCGGCTTCAGGTGGAGTCTTCCGGGATCACTCTATGGTTTTTTTAGGTGCTTTCTCAAAAAAAGTTGATGCTCTTTCTGCCATTGAATCTGAAGTCTTTGCTTTCTTAGAAGCCTTGAAAATTGCATGGAGTAAAGGTTGGAATTATCTATGGCTAGAAACAGATTCTATGCTTGTCACGCCCCGAATTTCGAATAAAGATATTCAAATCCGAAACACGATAATTAAACCAACTCTTAAAATTACAAGAAAACTTTTTCAAATAAATCAGAGTAGTAACAACAAGTGTTTACAAAAATCCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

154

Amino Acids

17.47

Weight (kDa)

9.69

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 44 - 138 8.7e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 3 cut(s) 60, 161, 460
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 2 cut(s) 150, 270
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 5 cut(s) 36, 245, 277, 365, 419
AluBI AGCT 2 cut(s) 8, 77
AluI AGCT 2 cut(s) 8, 77
AlwI GGATC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 144
ApoI RAATTY 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 44, 130
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 169
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 182
BfaI CTAG 2 cut(s) 74, 314
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 99, 139
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseAI TCCGGA 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 145, 181
BslI CCNNNNNNNGG 1 cut(s) 93
BsmI GAATGC 1 cut(s) 72
Bsp119I TTCGAA 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 3 cut(s) 60, 161, 460
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 99, 139
BspPI GGATC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 6, 62
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 113
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 236, 337
BstSCI CCNGG 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 6, 62
Cfr13I GGNCC 1 cut(s) 138
CviAII CATG 2 cut(s) 114, 285
CviJI RGCY 9 cut(s) 8, 39, 47, 77, 100, 125, 164, 272, 313
CviKI_1 RGCY 9 cut(s) 8, 39, 47, 77, 100, 125, 164, 272, 313
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 150, 270
EcoO109I RGGNCCY 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 117, 288
FaiI YATR 5 cut(s) 115, 194, 286, 310, 329
FatI CATG 2 cut(s) 113, 284
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 74, 314
GluI GCNGC 1 cut(s) 162
HapII CCGG 2 cut(s) 145, 181
Hin1II CATG 2 cut(s) 117, 288
HinfI GANTC 4 cut(s) 107, 174, 245, 323
HpaII CCGG 2 cut(s) 145, 181
HphI GGTGA 2 cut(s) 44, 130
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 3 cut(s) 250, 371, 429
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 2 cut(s) 115, 151
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 4, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 337
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 2 cut(s) 117, 288
Kpn2I TCCGGA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 28, 117, 153, 158, 194
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 74, 314
MaeIII GTNAC 2 cut(s) 334, 434
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 6 cut(s) 29, 279, 301, 345, 381, 399
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 1 cut(s) 50
MroI TCCGGA 1 cut(s) 144
MseI TTAA 3 cut(s) 152, 384, 396
MspI CCGG 2 cut(s) 145, 181
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 236, 337
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 113
NdeII GATC 1 cut(s) 184
NlaIII CATG 2 cut(s) 117, 288
NlaIV GGNNCC 2 cut(s) 99, 139
NmuCI GTSAC 1 cut(s) 334
NspV TTCGAA 1 cut(s) 350
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 107, 245, 323
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 99, 139
PspPI GGNCC 1 cut(s) 138
PspPPI RGGWCCY 1 cut(s) 138
SaqAI TTAA 3 cut(s) 152, 384, 396
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 102
SetI ASST 6 cut(s) 10, 57, 79, 172, 208, 298
SfaNI GCATC 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 1 cut(s) 138
Sse9I AATT 6 cut(s) 29, 279, 301, 345, 381, 399
SsiI CCGC 3 cut(s) 60, 161, 460
SspMI CTAG 2 cut(s) 74, 314
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 350
TasI AATT 6 cut(s) 29, 279, 301, 345, 381, 399
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 107, 245, 323
Tru1I TTAA 3 cut(s) 152, 384, 396
Tru9I TTAA 3 cut(s) 152, 384, 396
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 345
XspI CTAG 2 cut(s) 74, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.