Rh6AG170900
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011645
Physical Location & Seq
Reverse (-)
27629160 .. 27658065
28906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG170900.1

Sequence Viewer

Length: 615 bp
ATGGGGAGAGGCAAGATTGTGATCCGAAGGATTGACAATTCGACGAGCAGACAAGTGACGTTTTCCAAGCGAAGAAATGGGCTGCTGAAGAAGGCTAAGGAGCTTTCAGTCCTTTGTGATGCTGAGGTTGGATTGATCATCTTCTCCAGCACCGGCAGGCTCTATGATTATGCTAGCACTAGCATGAAATCAGTTATTGATCGCTATAAAAAGCTCAAAGAGGAACATCACCAACTGTTGAATCCTGCTTCTGAAGTCAAGTTTTGGGAAAGGGAGGCAGCAAGCTTGACACAACAATTGCAGTACTTGCAAGAATGCCACAGGCAATTGATGGGTGAAGAACTATCTGGTTTGAGCATCAAAGATCTACAGAACCTGGAAAGCAAACTGGAGATGAGTTTGAAAGGTGTCCGGTTGAAAAAGGACCAGATATTAAATGAAGAAATAAAAGACCTGAGCCAGAAGGGAAATCTCATACATCAAGAGAACATAGAACTGTATAAGAAGCTAGACGTCATAGGTAAAGAGAATGTGGAACTCCAAAGAAAGGTATATTCTAAAATATATATAATTTTCCTTCCTCTTTCCCTCCTTTTATCCATTTTCAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

204

Amino Acids

23.6

Weight (kDa)

9.44

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 8.9e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 83 - 170 2.3e-25 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AclWI GGATC 1 cut(s) 16
AcuI CTGAAG 2 cut(s) 107, 273
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 547
AgsI TTSAA 4 cut(s) 241, 403, 418, 607
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 4 cut(s) 103, 214, 285, 508
AluI AGCT 4 cut(s) 103, 214, 285, 508
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 376
ApeKI GCWGC 2 cut(s) 82, 278
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 221, 347
AsuNHI GCTAGC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 424
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 69, 290
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 135
BfaI CTAG 3 cut(s) 174, 180, 509
BfmI CTRYAG 1 cut(s) 368
BglII AGATCT 1 cut(s) 364
BisI GCNGC 2 cut(s) 83, 279
BlsI GCNGC 2 cut(s) 84, 280
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 109, 366
BmtI GCTAGC 1 cut(s) 177
BpmI CTGGAG 2 cut(s) 130, 410
Bpu10I CCTNAGC 3 cut(s) 96, 123, 455
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 513
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 377
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 114, 446
BseNI ACTGG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 69, 290
BsiSI CCGG 2 cut(s) 153, 412
BslI CCNNNNNNNGG 1 cut(s) 547
BsmI GAATGC 1 cut(s) 320
Bsp143I GATC 4 cut(s) 21, 135, 199, 364
BspCNI CTCAG 2 cut(s) 115, 447
BspOI GCTAGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 4 cut(s) 21, 135, 199, 364
BssNI GRCGYC 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 237, 498
BstACI GRCGYC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 307
BstC8I GCNNGC 3 cut(s) 158, 175, 283
BstDEI CTNAG 3 cut(s) 96, 123, 455
BstKTI GATC 4 cut(s) 24, 138, 202, 367
BstMBI GATC 4 cut(s) 21, 135, 199, 364
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 69, 290
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 158, 175, 283
CaiI CAGNNNCTG 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 184
CviJI RGCY 9 cut(s) 82, 95, 103, 160, 214, 285, 459, 508, 612
CviKI_1 RGCY 9 cut(s) 82, 95, 103, 160, 214, 285, 459, 508, 612
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 3 cut(s) 96, 123, 455
DpnI GATC 4 cut(s) 23, 137, 201, 366
DpnII GATC 4 cut(s) 21, 135, 199, 364
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 107, 273
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 187
FatI CATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 83, 279
Fsp4HI GCNGC 2 cut(s) 83, 279
FspBI CTAG 3 cut(s) 174, 180, 509
GluI GCNGC 2 cut(s) 83, 279
GsuI CTGGAG 2 cut(s) 130, 410
HapII CCGG 2 cut(s) 153, 412
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 1 cut(s) 241
HpaII CCGG 2 cut(s) 153, 412
HphI GGTGA 2 cut(s) 221, 347
Hpy188I TCNGA 2 cut(s) 26, 253
Hpy188III TCNNGA 1 cut(s) 482
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 4 cut(s) 21, 85, 457, 587
HpyCH4III ACNGT 2 cut(s) 237, 498
HpyCH4IV ACGT 2 cut(s) 59, 513
HpyCH4V TGCA 2 cut(s) 301, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 3 cut(s) 96, 123, 455
HpySE526I ACGT 2 cut(s) 59, 513
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 21, 135, 199, 364
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 69, 290
LweI GCATC 2 cut(s) 109, 366
MaeI CTAG 3 cut(s) 174, 180, 509
MaeII ACGT 2 cut(s) 59, 513
MaeIII GTNAC 1 cut(s) 55
MalI GATC 4 cut(s) 23, 137, 201, 366
MboI GATC 4 cut(s) 21, 135, 199, 364
MboII GAAGA 5 cut(s) 84, 100, 133, 350, 452
MfeI CAATTG 2 cut(s) 296, 326
MflI RGATCY 1 cut(s) 364
MluCI AATT 4 cut(s) 37, 296, 326, 570
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 5 cut(s) 118, 214, 268, 591, 599
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 2 cut(s) 153, 412
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 2 cut(s) 296, 326
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeII GATC 4 cut(s) 21, 135, 199, 364
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 55
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 84, 280
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspPI GGNCC 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 2 cut(s) 83, 279
Sau3AI GATC 4 cut(s) 21, 135, 199, 364
Sau96I GGNCC 1 cut(s) 424
ScaI AGTACT 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 2 cut(s) 109, 366
SfcI CTRYAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 4 cut(s) 37, 296, 326, 570
SspMI CTAG 3 cut(s) 174, 180, 509
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 237, 498
TaiI ACGT 2 cut(s) 62, 516
TaqI TCGA 1 cut(s) 41
TasI AATT 4 cut(s) 37, 296, 326, 570
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 82, 278
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 200, 453
VpaK11BI GGWCC 1 cut(s) 424
XspI CTAG 3 cut(s) 174, 180, 509
ZraI GACGTC 1 cut(s) 514
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.